RLG00000023370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000442
Physical Location & Seq
Forward (+)
22674537 .. 22675755
1219 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023370

Sequence Viewer

Length: 450 bp
ATGATGAGCGGTTGCGCTGTTAAGGCAGCTAGGGAGGCCAGCAGCTCCAATAACAATGAGTTCATATATGCTAGCGGTGGGCTTATTCCCATCCCTGTTGGCGGTGATGATTGCGGCGGCTTCTGTGATGACGGAGGCAATTTGGTTTGGGTTACCGACGGGGTGATGTGTTGCCCAGATGGCTTTGATGGATCGCGATCGGCTTTAGGCCGGGGATGTGACCGGATCTGGTTTTGTGGAGATGCAAAGGATCCTGATCTTGGTGGTAGCGCTGAGATCGCGATTTTGGGATGGTTGGAGATGACAGACGAGGAAGGCTTCGTTTCTCCTGCAGATACGGTGATGGCTTGTCCTGCTAGATGGCATCTGGCAAAGTCCGTCCTTTGTCATGGTTTGGTAGGGAAGCTTCTCTCTCCGCGATCAGCCTGGATGGTGTGCGTCGGCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

15.51

Weight (kDa)

4.43

Isoelectric Point (pI)

52.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 9
AccII CGCG 3 cut(s) 196, 281, 418
AciI CCGC 6 cut(s) 9, 75, 102, 114, 117, 416
AclWI GGATC 4 cut(s) 199, 233, 245, 258
AcyI GRCGYC 1 cut(s) 444
AfeI AGCGCT 1 cut(s) 271
AfiI CCNNNNNNNGG 2 cut(s) 101, 260
AjnI CCWGG 1 cut(s) 425
AluBI AGCT 3 cut(s) 29, 45, 406
AluI AGCT 3 cut(s) 29, 45, 406
AlwI GGATC 4 cut(s) 199, 233, 245, 258
Aor51HI AGCGCT 1 cut(s) 271
AoxI GGCC 2 cut(s) 36, 208
ApeKI GCWGC 2 cut(s) 26, 42
AspLEI GCGC 2 cut(s) 17, 272
AsuC2I CCSGG 1 cut(s) 212
AsuHPI GGTGA 3 cut(s) 116, 175, 352
AsuNHI GCTAGC 1 cut(s) 71
BamHI GGATCC 1 cut(s) 250
BarI GAAGNNNNNNTAC 2 cut(s) 390, 422
BbvI GCAGC 2 cut(s) 38, 54
BccI CCATC 7 cut(s) 98, 173, 182, 285, 337, 354, 424
BciT130I CCWGG 1 cut(s) 427
BcnI CCSGG 1 cut(s) 212
BfaI CTAG 3 cut(s) 30, 72, 357
BfmI CTRYAG 1 cut(s) 330
BfoI RGCGCY 1 cut(s) 273
BglI GCCNNNNNGGC 1 cut(s) 180
BisI GCNGC 4 cut(s) 27, 43, 115, 118
BlsI GCNGC 4 cut(s) 28, 44, 116, 119
Bme1390I CCNGG 2 cut(s) 212, 427
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 2 cut(s) 212, 427
BmsI GCATC 2 cut(s) 232, 373
BmtI GCTAGC 1 cut(s) 75
BpuMI CCSGG 1 cut(s) 212
BsaBI GATNNNNATC 2 cut(s) 196, 255
BsaHI GRCGYC 1 cut(s) 444
BsaJI CCNNGG 1 cut(s) 211
BsaWI WCCGGW 1 cut(s) 222
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 260
Bse8I GATNNNNATC 2 cut(s) 196, 255
BseBI CCWGG 1 cut(s) 427
BseDI CCNNGG 1 cut(s) 211
BseGI GGATG 4 cut(s) 90, 221, 296, 435
BseJI GATNNNNATC 2 cut(s) 196, 255
BseLI CCNNNNNNNGG 2 cut(s) 101, 260
BseMII CTCAG 1 cut(s) 264
BseXI GCAGC 2 cut(s) 38, 54
Bsh1236I CGCG 3 cut(s) 196, 281, 418
Bsh1285I CGRYCG 1 cut(s) 200
BshFI GGCC 2 cut(s) 38, 210
BsiEI CGRYCG 1 cut(s) 200
BsiSI CCGG 2 cut(s) 211, 223
BslI CCNNNNNNNGG 2 cut(s) 101, 260
BsnI GGCC 2 cut(s) 38, 210
Bsp143I GATC 7 cut(s) 191, 197, 225, 250, 256, 276, 419
Bsp68I TCGCGA 2 cut(s) 196, 281
BspACI CCGC 6 cut(s) 9, 75, 102, 114, 117, 416
BspANI GGCC 2 cut(s) 38, 210
BspCNI CTCAG 1 cut(s) 265
BspFNI CGCG 3 cut(s) 196, 281, 418
BspLI GGNNCC 1 cut(s) 252
BspMAI CTGCAG 1 cut(s) 334
BspOI GCTAGC 1 cut(s) 75
BspPI GGATC 4 cut(s) 199, 233, 245, 258
BsrBI CCGCTC 1 cut(s) 9
BssECI CCNNGG 1 cut(s) 211
BssMI GATC 7 cut(s) 191, 197, 225, 250, 256, 276, 419
BssNI GRCGYC 1 cut(s) 444
Bst2UI CCWGG 1 cut(s) 427
Bst4CI ACNGT 1 cut(s) 340
BstACI GRCGYC 1 cut(s) 444
BstC8I GCNNGC 2 cut(s) 40, 73
BstDEI CTNAG 1 cut(s) 273
BstEII GGTNACC 1 cut(s) 151
BstF5I GGATG 4 cut(s) 90, 221, 296, 435
BstFNI CGCG 3 cut(s) 196, 281, 418
BstH2I RGCGCY 1 cut(s) 273
BstHHI GCGC 2 cut(s) 17, 272
BstKTI GATC 7 cut(s) 194, 200, 228, 253, 259, 279, 422
BstMBI GATC 7 cut(s) 191, 197, 225, 250, 256, 276, 419
BstMCI CGRYCG 1 cut(s) 200
BstMWI GCNNNNNNNGC 5 cut(s) 23, 35, 180, 278, 353
BstNI CCWGG 1 cut(s) 427
BstPI GGTNACC 1 cut(s) 151
BstSCI CCNGG 2 cut(s) 210, 425
BstSFI CTRYAG 1 cut(s) 330
BstUI CGCG 3 cut(s) 196, 281, 418
BstV1I GCAGC 2 cut(s) 38, 54
BstX2I RGATCY 2 cut(s) 225, 250
BstYI RGATCY 2 cut(s) 225, 250
BsuRI GGCC 2 cut(s) 38, 210
BtsCI GGATG 4 cut(s) 90, 221, 296, 435
BtuMI TCGCGA 2 cut(s) 196, 281
Cac8I GCNNGC 2 cut(s) 40, 73
CfoI GCGC 2 cut(s) 17, 272
CseI GACGC 2 cut(s) 427, 433
CviAII CATG 1 cut(s) 389
DdeI CTNAG 1 cut(s) 273
DpnI GATC 7 cut(s) 193, 199, 227, 252, 258, 278, 421
DpnII GATC 7 cut(s) 191, 197, 225, 250, 256, 276, 419
Eco47III AGCGCT 1 cut(s) 271
Eco91I GGTNACC 1 cut(s) 151
EcoO65I GGTNACC 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 425
FaeI CATG 1 cut(s) 392
FaiI YATR 4 cut(s) 65, 67, 69, 390
FatI CATG 1 cut(s) 388
Fnu4HI GCNGC 4 cut(s) 27, 43, 115, 118
FokI GGATG 4 cut(s) 77, 228, 303, 442
Fsp4HI GCNGC 4 cut(s) 27, 43, 115, 118
FspBI CTAG 3 cut(s) 30, 72, 357
GlaI GCGC 2 cut(s) 16, 271
GluI GCNGC 4 cut(s) 27, 43, 115, 118
HaeII RGCGCY 1 cut(s) 273
HaeIII GGCC 2 cut(s) 38, 210
HapII CCGG 2 cut(s) 211, 223
HgaI GACGC 2 cut(s) 427, 433
HhaI GCGC 2 cut(s) 17, 272
Hin1I GRCGYC 1 cut(s) 444
Hin1II CATG 1 cut(s) 392
Hin6I GCGC 2 cut(s) 15, 270
HinP1I GCGC 2 cut(s) 15, 270
HindIII AAGCTT 1 cut(s) 404
HpaII CCGG 2 cut(s) 211, 223
HphI GGTGA 3 cut(s) 116, 175, 352
Hpy188I TCNGA 1 cut(s) 449
Hpy188III TCNNGA 3 cut(s) 195, 254, 280
Hpy99I CGWCG 2 cut(s) 161, 443
HpyAV CCTTC 1 cut(s) 308
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4V TGCA 2 cut(s) 245, 332
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 35, 180, 278, 353
HpyF3I CTNAG 1 cut(s) 273
Hsp92I GRCGYC 1 cut(s) 444
Hsp92II CATG 1 cut(s) 392
HspAI GCGC 2 cut(s) 15, 270
Kzo9I GATC 7 cut(s) 191, 197, 225, 250, 256, 276, 419
LmnI GCTCC 1 cut(s) 50
Lsp1109I GCAGC 2 cut(s) 38, 54
LweI GCATC 2 cut(s) 232, 373
MaeI CTAG 3 cut(s) 30, 72, 357
MaeIII GTNAC 2 cut(s) 151, 218
MalI GATC 7 cut(s) 193, 199, 227, 252, 258, 278, 421
MbiI CCGCTC 1 cut(s) 9
MboI GATC 7 cut(s) 191, 197, 225, 250, 256, 276, 419
MflI RGATCY 2 cut(s) 225, 250
MluCI AATT 1 cut(s) 139
MmeI TCCRAC 1 cut(s) 276
MnlI CCTC 3 cut(s) 28, 128, 304
MseI TTAA 1 cut(s) 21
MspI CCGG 2 cut(s) 211, 223
MspR9I CCNGG 2 cut(s) 212, 427
MvaI CCWGG 1 cut(s) 427
MvnI CGCG 3 cut(s) 196, 281, 418
MwoI GCNNNNNNNGC 5 cut(s) 23, 35, 180, 278, 353
NciI CCSGG 1 cut(s) 212
NdeII GATC 7 cut(s) 191, 197, 225, 250, 256, 276, 419
NheI GCTAGC 1 cut(s) 71
NlaIII CATG 1 cut(s) 392
NlaIV GGNNCC 1 cut(s) 252
NmuCI GTSAC 1 cut(s) 218
NruI TCGCGA 2 cut(s) 196, 281
PkrI GCNGC 4 cut(s) 28, 44, 116, 119
Ple19I CGATCG 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 425
PspEI GGTNACC 1 cut(s) 151
PspGI CCWGG 1 cut(s) 425
PspN4I GGNNCC 1 cut(s) 252
PstI CTGCAG 1 cut(s) 334
PsuI RGATCY 2 cut(s) 225, 250
PvuI CGATCG 1 cut(s) 200
RruI TCGCGA 2 cut(s) 196, 281
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 4 cut(s) 27, 43, 115, 118
Sau3AI GATC 7 cut(s) 191, 197, 225, 250, 256, 276, 419
ScrFI CCNGG 2 cut(s) 212, 427
SetI ASST 3 cut(s) 31, 47, 408
SfaNI GCATC 2 cut(s) 232, 373
SfcI CTRYAG 1 cut(s) 330
Sse9I AATT 1 cut(s) 139
SsiI CCGC 6 cut(s) 9, 75, 102, 114, 117, 416
SspMI CTAG 3 cut(s) 30, 72, 357
StyD4I CCNGG 2 cut(s) 210, 425
TaaI ACNGT 1 cut(s) 340
TasI AATT 1 cut(s) 139
TauI GCSGC 2 cut(s) 117, 120
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TseFI GTSAC 1 cut(s) 218
TseI GCWGC 2 cut(s) 26, 42
Tsp45I GTSAC 1 cut(s) 218
TspDTI ATGAA 1 cut(s) 52
TspGWI ACGGA 2 cut(s) 147, 367
XspI CTAG 3 cut(s) 30, 72, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.