RchiOBHm_Chr6g0301581

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000442
Physical Location & Seq
Forward (+)
61923795 .. 61925064
1270 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27087

Sequence Viewer

Length: 810 bp
ATGACTCCGACTCTCGAGAGAGAGCAATATCGCCGATCTCTTTTTTGGGAAAGCGGCGGTGACAAAACTACTGGTCTGCTTCTCCCTTCGGGGTGCGACGGTGACAAATCTCTTCGTCAGACTCTATCTTATGTTAGAGGATGCGTAGTTACTGTACTTGATGGTGTTTGGGTTCTAATTCACCGGATCTGGTTTGGTGGAAGATTTCCAATTGGCAGTGATGTAGATCCGACTGATTGTGCTGGAAATTGGCATGTGCAGAGTGGTGGACTGATTCCCATCTCTGTTGGCTGTGATGATTGCGGAGGCTTCTGTGCTGACGGCGGCACTTTGGTTTGGACTACCGACAACGTGGTGCGATGCCCAGATGGCCTTGCTGGATCGCGATTGGCTGTAGGTCGAGGTTGTGACCGGATCTGGTTTTGTGGAGAAGTAAAGGTTCCGGATCTTGATGGCGGTGCTGGGGCAGCCATTTTGGGATGGTCGGAGGTGAAAGCTAGGGATTGGGATGAGGAAGGATTCGTTTCTCTTGCAGATACAGTGTTGGCTTGTCCCGTTGGATGGCAATTGGTAGACTGGATGGTGAGCATCGGTGTCCGCCTTGGCCGGGAAGACGAAGACCCGTCTGAGTTGGGCAGTAATGAAGTCGGCGGCGGCTGCAGGGTGTTTCCCTCGACTGGTGTCGGTGACGGCGCAGCTGATGGTTGTTGGCTGGAAGTACACTTATGGGCTCATTGGGCTAGGGCTGTGGTTTACCCTACTCTTTGGGACTGCTCTTGGTGTTGCAGGGCCTCCTGGGGCTTGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

269

Amino Acids

29.0

Weight (kDa)

4.53

Isoelectric Point (pI)

30.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 573
AccII CGCG 1 cut(s) 385
AccIII TCCGGA 1 cut(s) 442
AciI CCGC 8 cut(s) 54, 57, 303, 324, 456, 598, 651, 654
AclWI GGATC 5 cut(s) 194, 221, 388, 422, 453
AcoI YGGCCR 1 cut(s) 604
AfaI GTAC 2 cut(s) 156, 720
AfiI CCNNNNNNNGG 3 cut(s) 561, 607, 677
AjnI CCWGG 1 cut(s) 794
AluBI AGCT 2 cut(s) 497, 698
AluI AGCT 2 cut(s) 497, 698
AlwI GGATC 5 cut(s) 194, 221, 388, 422, 453
Ama87I CYCGRG 1 cut(s) 14
Aor13HI TCCGGA 1 cut(s) 442
AoxI GGCC 3 cut(s) 370, 604, 789
ApeKI GCWGC 3 cut(s) 467, 657, 695
AspLEI GCGC 1 cut(s) 695
AspS9I GGNCC 1 cut(s) 789
AsuC2I CCSGG 1 cut(s) 608
AsuHPI GGTGA 6 cut(s) 71, 113, 173, 502, 595, 698
AvaI CYCGRG 1 cut(s) 14
BanII GRGCYC 1 cut(s) 733
BbsI GAAGAC 2 cut(s) 618, 624
BbvI GCAGC 3 cut(s) 479, 644, 707
BccI CCATC 8 cut(s) 155, 287, 362, 446, 474, 555, 574, 695
BceAI ACGGC 2 cut(s) 337, 706
BciT130I CCWGG 1 cut(s) 796
BcnI CCSGG 1 cut(s) 608
BfaI CTAG 3 cut(s) 498, 741, 808
BfmI CTRYAG 2 cut(s) 393, 658
BglI GCCNNNNNGGC 1 cut(s) 369
BisI GCNGC 7 cut(s) 55, 325, 468, 652, 655, 658, 696
BlsI GCNGC 7 cut(s) 56, 326, 469, 653, 656, 659, 697
Bme1390I CCNGG 2 cut(s) 608, 796
BmeT110I CYCGRG 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 789
BmiI GGNNCC 1 cut(s) 441
BmrFI CCNGG 2 cut(s) 608, 796
BmsI GCATC 3 cut(s) 131, 350, 597
BoxI GACNNNNGTC 1 cut(s) 680
BpiI GAAGAC 2 cut(s) 618, 624
BpuMI CCSGG 1 cut(s) 608
BsaBI GATNNNNATC 2 cut(s) 225, 278
BsaJI CCNNGG 2 cut(s) 601, 795
BsaWI WCCGGW 3 cut(s) 183, 411, 442
Bsc4I CCNNNNNNNGG 3 cut(s) 561, 607, 677
Bse1I ACTGG 3 cut(s) 76, 581, 682
Bse8I GATNNNNATC 2 cut(s) 225, 278
BseAI TCCGGA 1 cut(s) 442
BseBI CCWGG 1 cut(s) 796
BseDI CCNNGG 2 cut(s) 601, 795
BseGI GGATG 5 cut(s) 146, 485, 514, 566, 585
BseJI GATNNNNATC 2 cut(s) 225, 278
BseLI CCNNNNNNNGG 3 cut(s) 561, 607, 677
BseMII CTCAG 1 cut(s) 618
BseNI ACTGG 3 cut(s) 76, 581, 682
BseXI GCAGC 3 cut(s) 479, 644, 707
BseYI CCCAGC 1 cut(s) 461
BsgI GTGCAG 1 cut(s) 278
Bsh1236I CGCG 1 cut(s) 385
BshFI GGCC 3 cut(s) 372, 606, 791
BsiHKCI CYCGRG 1 cut(s) 14
BsiSI CCGG 4 cut(s) 184, 412, 443, 607
BslFI GGGAC 2 cut(s) 537, 782
BslI CCNNNNNNNGG 3 cut(s) 561, 607, 677
BsmFI GGGAC 2 cut(s) 537, 782
BsnI GGCC 3 cut(s) 372, 606, 791
BsoBI CYCGRG 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 733
Bsp13I TCCGGA 1 cut(s) 442
Bsp143I GATC 6 cut(s) 35, 186, 226, 380, 414, 445
Bsp68I TCGCGA 1 cut(s) 385
BspACI CCGC 8 cut(s) 54, 57, 303, 324, 456, 598, 651, 654
BspANI GGCC 3 cut(s) 372, 606, 791
BspCNI CTCAG 1 cut(s) 619
BspEI TCCGGA 1 cut(s) 442
BspFNI CGCG 1 cut(s) 385
BspLI GGNNCC 1 cut(s) 441
BspMAI CTGCAG 1 cut(s) 662
BspPI GGATC 5 cut(s) 194, 221, 388, 422, 453
BsrI ACTGG 3 cut(s) 76, 581, 682
BssECI CCNNGG 2 cut(s) 601, 795
BssMI GATC 6 cut(s) 35, 186, 226, 380, 414, 445
BssT1I CCWWGG 1 cut(s) 601
Bst2UI CCWGG 1 cut(s) 796
Bst4CI ACNGT 3 cut(s) 101, 154, 541
Bst6I CTCTTC 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 627
BstF5I GGATG 5 cut(s) 146, 485, 514, 566, 585
BstFNI CGCG 1 cut(s) 385
BstHHI GCGC 1 cut(s) 695
BstKTI GATC 6 cut(s) 38, 189, 229, 383, 417, 448
BstMBI GATC 6 cut(s) 35, 186, 226, 380, 414, 445
BstMWI GCNNNNNNNGC 4 cut(s) 369, 467, 657, 737
BstNI CCWGG 1 cut(s) 796
BstNSI RCATGY 1 cut(s) 257
BstPAI GACNNNNGTC 1 cut(s) 680
BstSCI CCNGG 2 cut(s) 606, 794
BstSFI CTRYAG 2 cut(s) 393, 658
BstUI CGCG 1 cut(s) 385
BstV1I GCAGC 3 cut(s) 479, 644, 707
BstV2I GAAGAC 2 cut(s) 618, 624
BstX2I RGATCY 4 cut(s) 186, 226, 414, 445
BstYI RGATCY 4 cut(s) 186, 226, 414, 445
BsuRI GGCC 3 cut(s) 372, 606, 791
BtgZI GCGATG 1 cut(s) 373
BtsCI GGATG 5 cut(s) 146, 485, 514, 566, 585
BtsI GCAGTG 1 cut(s) 223
BtsIMutI CAGTG 2 cut(s) 223, 546
BtuMI TCGCGA 1 cut(s) 385
CfoI GCGC 1 cut(s) 695
Cfr13I GGNCC 1 cut(s) 789
Csp6I GTAC 2 cut(s) 155, 719
CviAII CATG 1 cut(s) 254
CviQI GTAC 2 cut(s) 155, 719
DdeI CTNAG 1 cut(s) 627
DpnI GATC 6 cut(s) 37, 188, 228, 382, 416, 447
DpnII GATC 6 cut(s) 35, 186, 226, 380, 414, 445
EaeI YGGCCR 1 cut(s) 604
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
EciI GGCGGA 1 cut(s) 587
Eco130I CCWWGG 1 cut(s) 601
Eco24I GRGCYC 1 cut(s) 733
Eco88I CYCGRG 1 cut(s) 14
EcoO109I RGGNCCY 1 cut(s) 789
EcoRII CCWGG 1 cut(s) 794
EcoT14I CCWWGG 1 cut(s) 601
EcoT38I GRGCYC 1 cut(s) 733
ErhI CCWWGG 1 cut(s) 601
FaeI CATG 1 cut(s) 257
FaiI YATR 3 cut(s) 132, 255, 727
FaqI GGGAC 2 cut(s) 537, 782
FatI CATG 1 cut(s) 253
FblI GTMKAC 1 cut(s) 573
Fnu4HI GCNGC 7 cut(s) 55, 325, 468, 652, 655, 658, 696
FokI GGATG 5 cut(s) 153, 492, 521, 573, 592
FriOI GRGCYC 1 cut(s) 733
Fsp4HI GCNGC 7 cut(s) 55, 325, 468, 652, 655, 658, 696
FspBI CTAG 3 cut(s) 498, 741, 808
GlaI GCGC 1 cut(s) 694
GluI GCNGC 7 cut(s) 55, 325, 468, 652, 655, 658, 696
GsaI CCCAGC 1 cut(s) 465
HaeIII GGCC 3 cut(s) 372, 606, 791
HapII CCGG 4 cut(s) 184, 412, 443, 607
HhaI GCGC 1 cut(s) 695
Hin1II CATG 1 cut(s) 257
Hin6I GCGC 1 cut(s) 693
HinP1I GCGC 1 cut(s) 693
HinfI GANTC 5 cut(s) 4, 10, 121, 274, 519
HpaII CCGG 4 cut(s) 184, 412, 443, 607
HphI GGTGA 6 cut(s) 71, 113, 173, 502, 595, 698
Hpy166II GTNNAC 4 cut(s) 269, 574, 721, 754
Hpy188I TCNGA 5 cut(s) 9, 120, 231, 487, 628
Hpy188III TCNNGA 5 cut(s) 14, 16, 384, 443, 449
Hpy8I GTNNAC 4 cut(s) 269, 574, 721, 754
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 2 cut(s) 96, 509
HpyCH4III ACNGT 3 cut(s) 101, 154, 541
HpyCH4IV ACGT 1 cut(s) 351
HpyCH4V TGCA 4 cut(s) 259, 533, 660, 786
HpyF10VI GCNNNNNNNGC 4 cut(s) 369, 467, 657, 737
HpyF3I CTNAG 1 cut(s) 627
HpySE526I ACGT 1 cut(s) 351
Hsp92II CATG 1 cut(s) 257
HspAI GCGC 1 cut(s) 693
Kpn2I TCCGGA 1 cut(s) 442
Kzo9I GATC 6 cut(s) 35, 186, 226, 380, 414, 445
Lsp1109I GCAGC 3 cut(s) 479, 644, 707
LweI GCATC 3 cut(s) 131, 350, 597
MaeI CTAG 3 cut(s) 498, 741, 808
MaeII ACGT 1 cut(s) 351
MaeIII GTNAC 5 cut(s) 59, 101, 148, 407, 686
MalI GATC 6 cut(s) 37, 188, 228, 382, 416, 447
MboI GATC 6 cut(s) 35, 186, 226, 380, 414, 445
MboII GAAGA 4 cut(s) 104, 213, 623, 629
MfeI CAATTG 2 cut(s) 210, 566
MflI RGATCY 4 cut(s) 186, 226, 414, 445
MhlI GDGCHC 1 cut(s) 733
MluCI AATT 4 cut(s) 177, 210, 247, 566
MlyI GAGTC 2 cut(s) 4, 115
MmeI TCCRAC 4 cut(s) 32, 254, 465, 538
MnlI CCTC 7 cut(s) 131, 299, 395, 481, 505, 682, 802
MroI TCCGGA 1 cut(s) 442
MspA1I CMGCKG 1 cut(s) 698
MspI CCGG 4 cut(s) 184, 412, 443, 607
MspR9I CCNGG 2 cut(s) 608, 796
MunI CAATTG 2 cut(s) 210, 566
MvaI CCWGG 1 cut(s) 796
MvnI CGCG 1 cut(s) 385
MwoI GCNNNNNNNGC 4 cut(s) 369, 467, 657, 737
NciI CCSGG 1 cut(s) 608
NdeII GATC 6 cut(s) 35, 186, 226, 380, 414, 445
NlaIII CATG 1 cut(s) 257
NlaIV GGNNCC 1 cut(s) 441
NmuCI GTSAC 4 cut(s) 59, 101, 407, 686
NruI TCGCGA 1 cut(s) 385
NspI RCATGY 1 cut(s) 257
PaeR7I CTCGAG 1 cut(s) 14
PfeI GAWTC 2 cut(s) 274, 519
PkrI GCNGC 7 cut(s) 56, 326, 469, 653, 656, 659, 697
PleI GAGTC 2 cut(s) 4, 115
PpsI GAGTC 2 cut(s) 4, 115
PshAI GACNNNNGTC 1 cut(s) 680
Psp6I CCWGG 1 cut(s) 794
PspFI CCCAGC 1 cut(s) 461
PspGI CCWGG 1 cut(s) 794
PspN4I GGNNCC 1 cut(s) 441
PspPI GGNCC 1 cut(s) 789
PstI CTGCAG 1 cut(s) 662
PsuI RGATCY 4 cut(s) 186, 226, 414, 445
PvuII CAGCTG 1 cut(s) 698
RruI TCGCGA 1 cut(s) 385
RsaI GTAC 2 cut(s) 156, 720
RsaNI GTAC 2 cut(s) 155, 719
SatI GCNGC 7 cut(s) 55, 325, 468, 652, 655, 658, 696
Sau3AI GATC 6 cut(s) 35, 186, 226, 380, 414, 445
Sau96I GGNCC 1 cut(s) 789
SchI GAGTC 2 cut(s) 4, 115
ScrFI CCNGG 2 cut(s) 608, 796
SduI GDGCHC 1 cut(s) 733
SetI ASST 7 cut(s) 354, 400, 406, 441, 492, 499, 700
SfaNI GCATC 3 cut(s) 131, 350, 597
SfcI CTRYAG 2 cut(s) 393, 658
Sfr274I CTCGAG 1 cut(s) 14
SlaI CTCGAG 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 4 cut(s) 177, 210, 247, 566
SsiI CCGC 8 cut(s) 54, 57, 303, 324, 456, 598, 651, 654
SspMI CTAG 3 cut(s) 498, 741, 808
StyD4I CCNGG 2 cut(s) 606, 794
StyI CCWWGG 1 cut(s) 601
TaaI ACNGT 3 cut(s) 101, 154, 541
TaiI ACGT 1 cut(s) 354
TaqI TCGA 3 cut(s) 15, 400, 674
TasI AATT 4 cut(s) 177, 210, 247, 566
TatI WGTACW 2 cut(s) 154, 718
TauI GCSGC 4 cut(s) 57, 327, 654, 657
TfiI GAWTC 2 cut(s) 274, 519
TscAI CASTG 2 cut(s) 223, 546
TseFI GTSAC 4 cut(s) 59, 101, 407, 686
TseI GCWGC 3 cut(s) 467, 657, 695
Tsp45I GTSAC 4 cut(s) 59, 101, 407, 686
TspDTI ATGAA 1 cut(s) 657
TspRI CASTG 2 cut(s) 223, 546
XceI RCATGY 1 cut(s) 257
XhoI CTCGAG 1 cut(s) 14
XmiI GTMKAC 1 cut(s) 573
XspI CTAG 3 cut(s) 498, 741, 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.