RLG00000022057

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000442
Physical Location & Seq
Reverse (-)
80465525 .. 80466808
1284 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022057

Sequence Viewer

Length: 456 bp
ATGGAAGCGGTGCGTTTTGACGGGGCTGAGTGCGAACGGATCAGGATTGTATTTGGATTCGGCGCAGGCATGGCCACCCTACCATTTCCCAAGTTGTACCTTGAAGAGGTGAAGCTAGAGGCAGAACTGGACATTAAGAAGGCTTGGGTCAGAGAAGTACTTCAAGGGATTATGTGGAGAATGTCCAAGGGCATCAACAGTGGATCCTTGGACCCTAAGCTTATTGAAATCATTGACAACAGACCTATTTTGCCGGAGGAAGCAGTCATAGAGGGCATACATCCACCATACCTTCTCGCCATCAAGTCTTTCGTCACTGATTTCCATGCCAGTGACTATCCAAAGATGAGCCCAAGGGACCAGCTGCAGTACGATGACTTTGTGTCTTTTTTAGACACACTCACCACTCTGTATGTGCTACCTTATATTTCTTCCCGACTTGCAACATATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.26

Weight (kDa)

4.93

Isoelectric Point (pI)

46.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 8
AclWI GGATC 3 cut(s) 47, 198, 211
AcoI YGGCCR 1 cut(s) 72
AfaI GTAC 3 cut(s) 98, 159, 371
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 3 cut(s) 104, 164, 227
AhdI GACNNNNNGTC 1 cut(s) 382
AluBI AGCT 3 cut(s) 115, 220, 364
AluI AGCT 3 cut(s) 115, 220, 364
AlwI GGATC 3 cut(s) 47, 198, 211
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 364
Asp700I GAANNNNTTC 1 cut(s) 159
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 2 cut(s) 211, 358
AsuHPI GGTGA 2 cut(s) 121, 394
AvaII GGWCC 2 cut(s) 211, 358
BalI TGGCCA 1 cut(s) 74
BamHI GGATCC 1 cut(s) 203
BanII GRGCYC 1 cut(s) 353
BbvI GCAGC 1 cut(s) 351
BccI CCATC 1 cut(s) 308
BfaI CTAG 1 cut(s) 116
BfmI CTRYAG 1 cut(s) 365
BisI GCNGC 1 cut(s) 365
BlsI GCNGC 1 cut(s) 366
BmcAI AGTACT 1 cut(s) 159
Bme18I GGWCC 2 cut(s) 211, 358
BmeRI GACNNNNNGTC 1 cut(s) 382
BmgT120I GGNCC 2 cut(s) 211, 358
BmiI GGNNCC 3 cut(s) 205, 213, 359
BmsI GCATC 1 cut(s) 201
Bpu10I CCTNAGC 1 cut(s) 216
BsaJI CCNNGG 3 cut(s) 186, 207, 353
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse1I ACTGG 2 cut(s) 132, 330
BseDI CCNNGG 3 cut(s) 186, 207, 353
BseGI GGATG 1 cut(s) 280
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMII CTCAG 1 cut(s) 18
BseNI ACTGG 2 cut(s) 132, 330
BseXI GCAGC 1 cut(s) 351
BshFI GGCC 1 cut(s) 74
BsiSI CCGG 1 cut(s) 254
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 371
BsnI GGCC 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 353
Bsp143I GATC 2 cut(s) 39, 203
BspACI CCGC 1 cut(s) 8
BspANI GGCC 1 cut(s) 74
BspCNI CTCAG 1 cut(s) 19
BspLI GGNNCC 3 cut(s) 205, 213, 359
BspMAI CTGCAG 1 cut(s) 369
BspPI GGATC 3 cut(s) 47, 198, 211
BsrI ACTGG 2 cut(s) 132, 330
BssECI CCNNGG 3 cut(s) 186, 207, 353
BssMI GATC 2 cut(s) 39, 203
BssT1I CCWWGG 3 cut(s) 186, 207, 353
Bst4CI ACNGT 1 cut(s) 200
Bst6I CTCTTC 1 cut(s) 99
BstC8I GCNNGC 1 cut(s) 67
BstDEI CTNAG 2 cut(s) 27, 216
BstENI CCTNNNNNAGG 1 cut(s) 104
BstF5I GGATG 1 cut(s) 280
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 2 cut(s) 42, 206
BstMBI GATC 2 cut(s) 39, 203
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstSFI CTRYAG 1 cut(s) 365
BstV1I GCAGC 1 cut(s) 351
BstX2I RGATCY 1 cut(s) 203
BstYI RGATCY 1 cut(s) 203
BsuRI GGCC 1 cut(s) 74
BtsCI GGATG 1 cut(s) 280
BtsIMutI CAGTG 3 cut(s) 205, 315, 337
Cac8I GCNNGC 1 cut(s) 67
CfoI GCGC 1 cut(s) 65
Cfr13I GGNCC 2 cut(s) 211, 358
Csp6I GTAC 3 cut(s) 97, 158, 370
CviAII CATG 2 cut(s) 70, 326
CviJI RGCY 7 cut(s) 26, 74, 115, 143, 220, 351, 364
CviKI_1 RGCY 7 cut(s) 26, 74, 115, 143, 220, 351, 364
CviQI GTAC 3 cut(s) 97, 158, 370
DdeI CTNAG 2 cut(s) 27, 216
DpnI GATC 2 cut(s) 41, 205
DpnII GATC 2 cut(s) 39, 203
DriI GACNNNNNGTC 1 cut(s) 382
EaeI YGGCCR 1 cut(s) 72
Eam1104I CTCTTC 1 cut(s) 99
Eam1105I GACNNNNNGTC 1 cut(s) 382
EarI CTCTTC 1 cut(s) 99
Eco130I CCWWGG 3 cut(s) 186, 207, 353
Eco24I GRGCYC 1 cut(s) 353
Eco47I GGWCC 2 cut(s) 211, 358
EcoNI CCTNNNNNAGG 1 cut(s) 104
EcoT14I CCWWGG 3 cut(s) 186, 207, 353
EcoT38I GRGCYC 1 cut(s) 353
ErhI CCWWGG 3 cut(s) 186, 207, 353
FaeI CATG 2 cut(s) 73, 329
FaqI GGGAC 1 cut(s) 371
FatI CATG 2 cut(s) 69, 325
Fnu4HI GCNGC 1 cut(s) 365
FokI GGATG 1 cut(s) 267
FriOI GRGCYC 1 cut(s) 353
Fsp4HI GCNGC 1 cut(s) 365
FspBI CTAG 1 cut(s) 116
GlaI GCGC 1 cut(s) 64
GluI GCNGC 1 cut(s) 365
HaeIII GGCC 1 cut(s) 74
HapII CCGG 1 cut(s) 254
HhaI GCGC 1 cut(s) 65
Hin1II CATG 2 cut(s) 73, 329
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 1 cut(s) 57
HpaII CCGG 1 cut(s) 254
HphI GGTGA 2 cut(s) 121, 394
Hpy188I TCNGA 1 cut(s) 152
Hpy188III TCNNGA 2 cut(s) 43, 435
HpyAV CCTTC 2 cut(s) 133, 302
HpyCH4III ACNGT 1 cut(s) 200
HpyCH4V TGCA 2 cut(s) 367, 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 2 cut(s) 27, 216
Hsp92II CATG 2 cut(s) 73, 329
HspAI GCGC 1 cut(s) 63
Kzo9I GATC 2 cut(s) 39, 203
LpnPI CCDG 6 cut(s) 28, 51, 113, 267, 343, 374
Lsp1109I GCAGC 1 cut(s) 351
LweI GCATC 1 cut(s) 201
MaeI CTAG 1 cut(s) 116
MaeIII GTNAC 2 cut(s) 313, 332
MalI GATC 2 cut(s) 41, 205
MboI GATC 2 cut(s) 39, 203
MboII GAAGA 2 cut(s) 116, 423
MflI RGATCY 1 cut(s) 203
MhlI GDGCHC 1 cut(s) 353
MlsI TGGCCA 1 cut(s) 74
MluNI TGGCCA 1 cut(s) 74
MnlI CCTC 4 cut(s) 100, 112, 250, 265
Mox20I TGGCCA 1 cut(s) 74
MroXI GAANNNNTTC 1 cut(s) 159
MscI TGGCCA 1 cut(s) 74
MseI TTAA 1 cut(s) 135
MslI CAYNNNNRTG 1 cut(s) 330
Msp20I TGGCCA 1 cut(s) 74
MspA1I CMGCKG 1 cut(s) 364
MspI CCGG 1 cut(s) 254
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 2 cut(s) 39, 203
NlaIII CATG 2 cut(s) 73, 329
NlaIV GGNNCC 3 cut(s) 205, 213, 359
NmuCI GTSAC 2 cut(s) 313, 332
PdmI GAANNNNTTC 1 cut(s) 159
PfeI GAWTC 1 cut(s) 57
PkrI GCNGC 1 cut(s) 366
PspN4I GGNNCC 3 cut(s) 205, 213, 359
PspPI GGNCC 2 cut(s) 211, 358
PstI CTGCAG 1 cut(s) 369
PsuI RGATCY 1 cut(s) 203
PvuII CAGCTG 1 cut(s) 364
RsaI GTAC 3 cut(s) 98, 159, 371
RsaNI GTAC 3 cut(s) 97, 158, 370
RseI CAYNNNNRTG 1 cut(s) 330
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 1 cut(s) 365
Sau3AI GATC 2 cut(s) 39, 203
Sau96I GGNCC 2 cut(s) 211, 358
ScaI AGTACT 1 cut(s) 159
SduI GDGCHC 1 cut(s) 353
SetI ASST 8 cut(s) 102, 111, 117, 222, 247, 294, 366, 424
SfaNI GCATC 1 cut(s) 201
SfcI CTRYAG 1 cut(s) 365
SinI GGWCC 2 cut(s) 211, 358
SmiMI CAYNNNNRTG 1 cut(s) 330
SsiI CCGC 1 cut(s) 8
SspMI CTAG 1 cut(s) 116
StyI CCWWGG 3 cut(s) 186, 207, 353
TaaI ACNGT 1 cut(s) 200
TatI WGTACW 1 cut(s) 157
TfiI GAWTC 1 cut(s) 57
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 3 cut(s) 205, 322, 337
TseFI GTSAC 2 cut(s) 313, 332
TseI GCWGC 1 cut(s) 364
Tsp45I GTSAC 2 cut(s) 313, 332
TspGWI ACGGA 1 cut(s) 52
TspRI CASTG 3 cut(s) 205, 322, 337
VpaK11BI GGWCC 2 cut(s) 211, 358
XagI CCTNNNNNAGG 1 cut(s) 104
XmnI GAANNNNTTC 1 cut(s) 159
XspI CTAG 1 cut(s) 116
ZrmI AGTACT 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.