FvH4_6g51201

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000442
Physical Location & Seq
Reverse (-)
37985336 .. 37987096
1761 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g51201.t1

Sequence Viewer

Length: 771 bp
ATGGGTTTGAGTCATATTCTTGGACTCGTCAGCCATGCCCCTCGTATTCCTCTGAGTTATACTCTAGCGGATTTTAAACAAAATCCAACACACTATCAAACACAAGACAATCCAGATCTGAGAAAGCGCTTTGCAATGGATATCATCGAAAACATTCGTTATGAAAAGGAGATCGGCAATCATGGCGGATCCCTAGCTTTACATCACATTACAGTGAGGGGACGAAGAGCTAGAATTTCAAGTGATATCATTTACGACCCCATGGTGCACAAGGACTATATTGAGGGCTACAAAGATTTCTTTACCGATTTGTATAGTGGCAATGAACCTTTGGACGACGTCAATTATGTAGACATCAAGTCATATATGCAGGAATTGAAGACAATGGACCAATTGTTATTGTTACTTTGCCACCCTTATTTTCAATGTATGGCTGAAGCTTTGAGATTCATTCCGTCGGCCCTTAGAAAGCTTAAAGGCTTAAGGGGTAAAAAGTTTCCGCTTCGAAGAACTGGGATTGGTCAAGAAACCCCAGATCAGGCAACAATGGAGCATTCCATACACGATTGGCAAGATGTATACAAGATTTTTGCGGAAGTGGATGAGGACATTGTGCATGCCCATCCTAACACTGCAACTCTTGATGTGTCTCGCCTTGCTGCTCGTGTCAAAGGGAAAATGTATCGATGCTTTACCAAAGCTTGGTTGTTCATGCCAAAGATTAATCTTGGTTGTTGGAGTATTCAAGGTTTCACTCTTCAAAGCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

257

Amino Acids

29.6

Weight (kDa)

8.26

Isoelectric Point (pI)

41.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 342
AccB7I CCANNNNNTGG 1 cut(s) 702
AccI GTMKAC 2 cut(s) 351, 579
AciI CCGC 4 cut(s) 68, 186, 500, 593
AclWI GGATC 2 cut(s) 183, 196
AcsI RAATTY 1 cut(s) 234
AcuI CTGAAG 1 cut(s) 456
AcyI GRCGYC 1 cut(s) 339
AfeI AGCGCT 1 cut(s) 128
AfiI CCNNNNNNNGG 2 cut(s) 538, 702
AflII CTTAAG 1 cut(s) 481
AgsI TTSAA 5 cut(s) 240, 379, 425, 746, 761
AhdI GACNNNNNGTC 1 cut(s) 358
AluBI AGCT 5 cut(s) 197, 230, 440, 472, 701
AluI AGCT 5 cut(s) 197, 230, 440, 472, 701
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 1 cut(s) 654
Alw44I GTGCAC 1 cut(s) 266
AlwI GGATC 2 cut(s) 183, 196
Aor51HI AGCGCT 1 cut(s) 128
AoxI GGCC 1 cut(s) 459
ApaLI GTGCAC 1 cut(s) 266
ApeKI GCWGC 1 cut(s) 659
ApoI RAATTY 1 cut(s) 234
AseI ATTAAT 1 cut(s) 723
Asp700I GAANNNNTTC 1 cut(s) 153
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 2 cut(s) 388, 460
AsuII TTCGAA 1 cut(s) 505
AvaII GGWCC 1 cut(s) 388
BaeGI GKGCMC 1 cut(s) 270
BamHI GGATCC 1 cut(s) 188
BauI CACGAG 1 cut(s) 663
BbsI GAAGAC 1 cut(s) 386
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 1 cut(s) 646
BccI CCATC 1 cut(s) 630
BcoDI GTCTC 1 cut(s) 654
BfaI CTAG 4 cut(s) 65, 194, 231, 769
BfoI RGCGCY 1 cut(s) 130
BfrI CTTAAG 1 cut(s) 481
BglII AGATCT 1 cut(s) 115
BisI GCNGC 1 cut(s) 660
BlsI GCNGC 1 cut(s) 661
Bme18I GGWCC 1 cut(s) 388
BmeRI GACNNNNNGTC 1 cut(s) 358
BmgT120I GGNCC 2 cut(s) 388, 460
BmiI GGNNCC 1 cut(s) 190
BmrI ACTGGG 1 cut(s) 522
BmsI GCATC 1 cut(s) 677
BmuI ACTGGG 1 cut(s) 522
BpiI GAAGAC 1 cut(s) 386
BplI GAGNNNNNCTC 2 cut(s) 46, 78
Bpu14I TTCGAA 1 cut(s) 505
Bsa29I ATCGAT 1 cut(s) 685
BsaHI GRCGYC 1 cut(s) 339
BsaJI CCNNGG 1 cut(s) 261
Bsc4I CCNNNNNNNGG 2 cut(s) 538, 702
Bse1I ACTGG 1 cut(s) 517
Bse3DI GCAATG 2 cut(s) 141, 328
BseCI ATCGAT 1 cut(s) 685
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 2 cut(s) 607, 622
BseLI CCNNNNNNNGG 2 cut(s) 538, 702
BseMI GCAATG 2 cut(s) 141, 328
BseMII CTCAG 2 cut(s) 44, 110
BseNI ACTGG 1 cut(s) 517
BseSI GKGCMC 1 cut(s) 270
BseXI GCAGC 1 cut(s) 646
BshFI GGCC 1 cut(s) 461
BshVI ATCGAT 1 cut(s) 685
BsiHKAI GWGCWC 1 cut(s) 270
BslFI GGGAC 1 cut(s) 234
BslI CCNNNNNNNGG 2 cut(s) 538, 702
BsmAI GTCTC 1 cut(s) 654
BsmFI GGGAC 1 cut(s) 234
BsmI GAATGC 1 cut(s) 553
BsnI GGCC 1 cut(s) 461
Bsp119I TTCGAA 1 cut(s) 505
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 4 cut(s) 115, 171, 188, 535
Bsp19I CCATGG 1 cut(s) 261
BspACI CCGC 4 cut(s) 68, 186, 500, 593
BspANI GGCC 1 cut(s) 461
BspCNI CTCAG 2 cut(s) 45, 111
BspDI ATCGAT 1 cut(s) 685
BspLI GGNNCC 1 cut(s) 190
BspPI GGATC 2 cut(s) 183, 196
BspQI GCTCTTC 1 cut(s) 220
BspT104I TTCGAA 1 cut(s) 505
BspTI CTTAAG 1 cut(s) 481
BsrDI GCAATG 2 cut(s) 141, 328
BsrI ACTGG 1 cut(s) 517
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 4 cut(s) 115, 171, 188, 535
BssNAI GTATAC 1 cut(s) 580
BssNI GRCGYC 1 cut(s) 339
BssSI CACGAG 1 cut(s) 663
BssT1I CCWWGG 1 cut(s) 261
Bst1107I GTATAC 1 cut(s) 580
Bst2BI CACGAG 1 cut(s) 663
Bst4CI ACNGT 1 cut(s) 214
Bst6I CTCTTC 2 cut(s) 220, 762
BstACI GRCGYC 1 cut(s) 339
BstAFI CTTAAG 1 cut(s) 481
BstBI TTCGAA 1 cut(s) 505
BstC8I GCNNGC 1 cut(s) 618
BstDEI CTNAG 3 cut(s) 53, 119, 464
BstDSI CCRYGG 1 cut(s) 261
BstF5I GGATG 2 cut(s) 607, 622
BstH2I RGCGCY 1 cut(s) 130
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 4 cut(s) 118, 174, 191, 538
BstMAI GTCTC 1 cut(s) 654
BstMBI GATC 4 cut(s) 115, 171, 188, 535
BstMWI GCNNNNNNNGC 1 cut(s) 183
BstNSI RCATGY 1 cut(s) 620
BstSLI GKGCMC 1 cut(s) 270
BstV1I GCAGC 1 cut(s) 646
BstV2I GAAGAC 1 cut(s) 386
BstX2I RGATCY 2 cut(s) 115, 188
BstYI RGATCY 2 cut(s) 115, 188
BstZ17I GTATAC 1 cut(s) 580
Bsu15I ATCGAT 1 cut(s) 685
BsuRI GGCC 1 cut(s) 461
BsuTUI ATCGAT 1 cut(s) 685
BtgI CCRYGG 1 cut(s) 261
BtsCI GGATG 2 cut(s) 607, 622
BtsI GCAGTG 1 cut(s) 630
BtsIMutI CAGTG 2 cut(s) 219, 630
Cac8I GCNNGC 1 cut(s) 618
CfoI GCGC 1 cut(s) 129
Cfr13I GGNCC 2 cut(s) 388, 460
ClaI ATCGAT 1 cut(s) 685
CviAII CATG 5 cut(s) 35, 182, 262, 617, 712
DdeI CTNAG 3 cut(s) 53, 119, 464
DpnI GATC 4 cut(s) 117, 173, 190, 537
DpnII GATC 4 cut(s) 115, 171, 188, 535
DraI TTTAAA 1 cut(s) 76
DriI GACNNNNNGTC 1 cut(s) 358
Eam1104I CTCTTC 2 cut(s) 220, 762
Eam1105I GACNNNNNGTC 1 cut(s) 358
EarI CTCTTC 2 cut(s) 220, 762
EciI GGCGGA 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 261
Eco32I GATATC 2 cut(s) 142, 247
Eco47I GGWCC 1 cut(s) 388
Eco47III AGCGCT 1 cut(s) 128
Eco57I CTGAAG 1 cut(s) 456
EcoRV GATATC 2 cut(s) 142, 247
EcoT14I CCWWGG 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 261
FaeI CATG 5 cut(s) 38, 185, 265, 620, 715
FaqI GGGAC 1 cut(s) 234
FatI CATG 5 cut(s) 34, 181, 261, 616, 711
FblI GTMKAC 2 cut(s) 351, 579
Fnu4HI GCNGC 1 cut(s) 660
FokI GGATG 2 cut(s) 609, 614
Fsp4HI GCNGC 1 cut(s) 660
FspBI CTAG 4 cut(s) 65, 194, 231, 769
GlaI GCGC 1 cut(s) 128
GluI GCNGC 1 cut(s) 660
HaeII RGCGCY 1 cut(s) 130
HaeIII GGCC 1 cut(s) 461
HhaI GCGC 1 cut(s) 129
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 5 cut(s) 38, 185, 265, 620, 715
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HindIII AAGCTT 3 cut(s) 438, 470, 699
HinfI GANTC 3 cut(s) 10, 24, 447
Hpy166II GTNNAC 3 cut(s) 268, 352, 580
Hpy188I TCNGA 2 cut(s) 54, 120
Hpy188III TCNNGA 3 cut(s) 113, 524, 641
Hpy8I GTNNAC 3 cut(s) 268, 352, 580
Hpy99I CGWCG 2 cut(s) 341, 460
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 1 cut(s) 339
HpyCH4V TGCA 5 cut(s) 134, 268, 370, 616, 635
HpyF10VI GCNNNNNNNGC 1 cut(s) 183
HpyF3I CTNAG 3 cut(s) 53, 119, 464
HpySE526I ACGT 1 cut(s) 339
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 5 cut(s) 38, 185, 265, 620, 715
HspAI GCGC 1 cut(s) 127
Kzo9I GATC 4 cut(s) 115, 171, 188, 535
LguI GCTCTTC 1 cut(s) 220
LmnI GCTCC 1 cut(s) 550
LpnPI CCDG 5 cut(s) 126, 356, 498, 524, 546
Lsp1109I GCAGC 1 cut(s) 646
LweI GCATC 1 cut(s) 677
MaeI CTAG 4 cut(s) 65, 194, 231, 769
MaeII ACGT 1 cut(s) 339
MaeIII GTNAC 1 cut(s) 402
MalI GATC 4 cut(s) 117, 173, 190, 537
MboI GATC 4 cut(s) 115, 171, 188, 535
MboII GAAGA 4 cut(s) 237, 391, 519, 749
MfeI CAATTG 1 cut(s) 392
MflI RGATCY 2 cut(s) 115, 188
MhlI GDGCHC 1 cut(s) 270
MluCI AATT 4 cut(s) 234, 343, 374, 392
MlyI GAGTC 2 cut(s) 18, 19
MmeI TCCRAC 2 cut(s) 110, 716
MnlI CCTC 5 cut(s) 51, 60, 210, 277, 598
MroXI GAANNNNTTC 1 cut(s) 153
MseI TTAA 4 cut(s) 75, 474, 482, 723
MslI CAYNNNNRTG 1 cut(s) 212
MspCI CTTAAG 1 cut(s) 481
MunI CAATTG 1 cut(s) 392
Mva1269I GAATGC 1 cut(s) 553
MwoI GCNNNNNNNGC 1 cut(s) 183
NcoI CCATGG 1 cut(s) 261
NdeII GATC 4 cut(s) 115, 171, 188, 535
NlaIII CATG 5 cut(s) 38, 185, 265, 620, 715
NlaIV GGNNCC 1 cut(s) 190
NspI RCATGY 1 cut(s) 620
NspV TTCGAA 1 cut(s) 505
PaeI GCATGC 1 cut(s) 620
PciSI GCTCTTC 1 cut(s) 220
PctI GAATGC 1 cut(s) 553
PdmI GAANNNNTTC 1 cut(s) 153
PfeI GAWTC 1 cut(s) 447
PflFI GACNNNGTC 1 cut(s) 338
PflMI CCANNNNNTGG 1 cut(s) 702
PkrI GCNGC 1 cut(s) 661
PleI GAGTC 2 cut(s) 18, 18
PpsI GAGTC 2 cut(s) 18, 18
PshBI ATTAAT 1 cut(s) 723
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 2 cut(s) 388, 460
PsuI RGATCY 2 cut(s) 115, 188
PsyI GACNNNGTC 1 cut(s) 338
RseI CAYNNNNRTG 1 cut(s) 212
SapI GCTCTTC 1 cut(s) 220
SaqAI TTAA 4 cut(s) 75, 474, 482, 723
SatI GCNGC 1 cut(s) 660
Sau3AI GATC 4 cut(s) 115, 171, 188, 535
Sau96I GGNCC 2 cut(s) 388, 460
SchI GAGTC 2 cut(s) 18, 19
SduI GDGCHC 1 cut(s) 270
SetI ASST 8 cut(s) 199, 232, 331, 342, 442, 474, 703, 751
SfaNI GCATC 1 cut(s) 677
SfuI TTCGAA 1 cut(s) 505
SinI GGWCC 1 cut(s) 388
SmiMI CAYNNNNRTG 1 cut(s) 212
SmlI CTYRAG 1 cut(s) 481
SmoI CTYRAG 1 cut(s) 481
SphI GCATGC 1 cut(s) 620
Sse9I AATT 4 cut(s) 234, 343, 374, 392
SsiI CCGC 4 cut(s) 68, 186, 500, 593
SspMI CTAG 4 cut(s) 65, 194, 231, 769
StyI CCWWGG 1 cut(s) 261
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 1 cut(s) 342
TaqI TCGA 3 cut(s) 147, 505, 685
TasI AATT 4 cut(s) 234, 343, 374, 392
TfiI GAWTC 1 cut(s) 447
Tru1I TTAA 4 cut(s) 75, 474, 482, 723
Tru9I TTAA 4 cut(s) 75, 474, 482, 723
TscAI CASTG 2 cut(s) 219, 637
TseI GCWGC 1 cut(s) 659
TspDTI ATGAA 4 cut(s) 177, 339, 439, 700
TspGWI ACGGA 1 cut(s) 444
TspRI CASTG 2 cut(s) 219, 637
Tth111I GACNNNGTC 1 cut(s) 338
Van91I CCANNNNNTGG 1 cut(s) 702
Vha464I CTTAAG 1 cut(s) 481
VneI GTGCAC 1 cut(s) 266
VpaK11BI GGWCC 1 cut(s) 388
VspI ATTAAT 1 cut(s) 723
XapI RAATTY 1 cut(s) 234
XceI RCATGY 1 cut(s) 620
XmiI GTMKAC 2 cut(s) 351, 579
XmnI GAANNNNTTC 1 cut(s) 153
XspI CTAG 4 cut(s) 65, 194, 231, 769
ZraI GACGTC 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.