Rh2CG612100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000442
Physical Location & Seq
Reverse (-)
78978621 .. 78979896
1276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG612100.1

Sequence Viewer

Length: 561 bp
ATGTTATTGCTGCTTCGCCACCCTTATTTTCAATCAGTGGATGAAGCTCTGAGATTCATTCCATCCGCCCTTAAATTACTTGATGGCTTAAGGGATAAAAAGTTTCCACGTCCAAGAACAGGGGCTAGTCAAGCAACCCCCGATCAAGCAACAATAGTGCGTGTCGAAAATCAACGTAGTTGGAAACATGTATACATGACTGTATGCTGCGAAGATAGAGTTAATATTTCAGAGTCAATTGGCAGAATTGAATCTGAAGATTACAGACGTGGATTTACGTCTCTGTATAATGCTGGAAAGAATGGCACACCGTATGAAGACACCGATGTGATAGATGAGCTGAAATTTTATGGAAACGCATGTAAACATCTAGTAAAACATATGAAGATACGTAGCGAAAGTGATTTATACCAAGCCTTGTGTCGGGCGTTTCCAGACGTGCCCAGAAAAGTGTTCAAGTTTTTCTGGACCTATGCAGGATATCACGACGGGCAAGTTAACTTGGAGTTTGTCAGACCTCTGATGAGCCTTTTCAAAAAGAAAGAGCGGATCTACTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

21.81

Weight (kDa)

9.23

Isoelectric Point (pI)

39.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 547
AccI GTMKAC 1 cut(s) 192
AciI CCGC 2 cut(s) 66, 547
AclWI GGATC 1 cut(s) 557
AcsI RAATTY 1 cut(s) 344
AcuI CTGAAG 1 cut(s) 276
AfiI CCNNNNNNNGG 2 cut(s) 119, 423
AflII CTTAAG 1 cut(s) 88
AflIII ACRYGT 1 cut(s) 187
AgsI TTSAA 4 cut(s) 32, 251, 457, 535
AjiI CACGTC 3 cut(s) 110, 269, 439
AleI CACNNNNGTG 1 cut(s) 326
AluBI AGCT 2 cut(s) 47, 340
AluI AGCT 2 cut(s) 47, 340
Alw26I GTCTC 1 cut(s) 285
AlwI GGATC 1 cut(s) 557
ApeKI GCWGC 2 cut(s) 10, 207
ApoI RAATTY 1 cut(s) 344
AspS9I GGNCC 1 cut(s) 468
AvaII GGWCC 1 cut(s) 468
BaeGI GKGCMC 1 cut(s) 444
BbsI GAAGAC 1 cut(s) 324
BbvI GCAGC 1 cut(s) 194
BccI CCATC 2 cut(s) 70, 77
BcoDI GTCTC 1 cut(s) 285
BfaI CTAG 2 cut(s) 126, 371
BfrI CTTAAG 1 cut(s) 88
BisI GCNGC 2 cut(s) 11, 208
BlsI GCNGC 2 cut(s) 12, 209
Bme18I GGWCC 1 cut(s) 468
BmgBI CACGTC 3 cut(s) 110, 269, 439
BmgT120I GGNCC 1 cut(s) 468
BpiI GAAGAC 1 cut(s) 324
BsaAI YACGTR 1 cut(s) 392
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 423
BseGI GGATG 2 cut(s) 46, 62
BseLI CCNNNNNNNGG 2 cut(s) 119, 423
BseMII CTCAG 1 cut(s) 41
BseSI GKGCMC 1 cut(s) 444
BseXI GCAGC 1 cut(s) 194
BslI CCNNNNNNNGG 2 cut(s) 119, 423
BsmAI GTCTC 1 cut(s) 285
BsmBI CGTCTC 1 cut(s) 285
Bsp1286I GDGCHC 1 cut(s) 444
Bsp143I GATC 2 cut(s) 142, 549
BspACI CCGC 2 cut(s) 66, 547
BspCNI CTCAG 1 cut(s) 42
BspPI GGATC 1 cut(s) 557
BspTI CTTAAG 1 cut(s) 88
BsrBI CCGCTC 1 cut(s) 547
BssMI GATC 2 cut(s) 142, 549
BssNAI GTATAC 1 cut(s) 193
Bst1107I GTATAC 1 cut(s) 193
Bst4CI ACNGT 2 cut(s) 202, 312
BstAFI CTTAAG 1 cut(s) 88
BstBAI YACGTR 1 cut(s) 392
BstDEI CTNAG 1 cut(s) 50
BstF5I GGATG 2 cut(s) 46, 62
BstKTI GATC 2 cut(s) 145, 552
BstMAI GTCTC 1 cut(s) 285
BstMBI GATC 2 cut(s) 142, 549
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNSI RCATGY 2 cut(s) 191, 363
BstSLI GKGCMC 1 cut(s) 444
BstSNI TACGTA 1 cut(s) 392
BstV1I GCAGC 1 cut(s) 194
BstV2I GAAGAC 1 cut(s) 324
BstX2I RGATCY 1 cut(s) 549
BstYI RGATCY 1 cut(s) 549
BstZ17I GTATAC 1 cut(s) 193
BtrI CACGTC 3 cut(s) 110, 269, 439
BtsCI GGATG 2 cut(s) 46, 62
BtsIMutI CAGTG 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 468
CviAII CATG 3 cut(s) 188, 196, 360
CviJI RGCY 6 cut(s) 47, 87, 125, 340, 416, 528
CviKI_1 RGCY 6 cut(s) 47, 87, 125, 340, 416, 528
DdeI CTNAG 1 cut(s) 50
DpnI GATC 2 cut(s) 144, 551
DpnII GATC 2 cut(s) 142, 549
EciI GGCGGA 1 cut(s) 55
Eco105I TACGTA 1 cut(s) 392
Eco32I GATATC 1 cut(s) 482
Eco47I GGWCC 1 cut(s) 468
Eco57I CTGAAG 1 cut(s) 276
EcoRV GATATC 1 cut(s) 482
Esp3I CGTCTC 1 cut(s) 285
FaeI CATG 3 cut(s) 191, 199, 363
FatI CATG 3 cut(s) 187, 195, 359
FauNDI CATATG 1 cut(s) 381
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 2 cut(s) 11, 208
FokI GGATG 2 cut(s) 49, 53
Fsp4HI GCNGC 2 cut(s) 11, 208
FspBI CTAG 2 cut(s) 126, 371
GluI GCNGC 2 cut(s) 11, 208
Hin1II CATG 3 cut(s) 191, 199, 363
HincII GTYRAC 1 cut(s) 499
HindII GTYRAC 1 cut(s) 499
HinfI GANTC 3 cut(s) 54, 233, 251
HpaI GTTAAC 1 cut(s) 499
Hpy166II GTNNAC 3 cut(s) 193, 365, 499
Hpy188I TCNGA 5 cut(s) 51, 232, 256, 515, 522
Hpy188III TCNNGA 3 cut(s) 434, 466, 485
Hpy8I GTNNAC 3 cut(s) 193, 365, 499
Hpy99I CGWCG 1 cut(s) 491
HpyCH4III ACNGT 2 cut(s) 202, 312
HpyCH4IV ACGT 6 cut(s) 109, 175, 268, 278, 391, 438
HpyCH4V TGCA 1 cut(s) 476
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 50
HpySE526I ACGT 6 cut(s) 109, 175, 268, 278, 391, 438
Hsp92II CATG 3 cut(s) 191, 199, 363
KspAI GTTAAC 1 cut(s) 499
Kzo9I GATC 2 cut(s) 142, 549
LpnPI CCDG 6 cut(s) 105, 279, 447, 451, 457, 462
Lsp1109I GCAGC 1 cut(s) 194
MaeI CTAG 2 cut(s) 126, 371
MaeII ACGT 6 cut(s) 109, 175, 268, 278, 391, 438
MalI GATC 2 cut(s) 144, 551
MbiI CCGCTC 1 cut(s) 547
MboI GATC 2 cut(s) 142, 549
MboII GAAGA 4 cut(s) 224, 269, 329, 397
MfeI CAATTG 1 cut(s) 237
MflI RGATCY 1 cut(s) 549
MhlI GDGCHC 1 cut(s) 444
MluCI AATT 4 cut(s) 74, 237, 246, 344
MlyI GAGTC 1 cut(s) 242
MmeI TCCRAC 1 cut(s) 161
MnlI CCTC 1 cut(s) 528
MseI TTAA 4 cut(s) 72, 89, 222, 498
MslI CAYNNNNRTG 1 cut(s) 326
MspCI CTTAAG 1 cut(s) 88
MunI CAATTG 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeI CATATG 1 cut(s) 381
NdeII GATC 2 cut(s) 142, 549
NlaIII CATG 3 cut(s) 191, 199, 363
NspI RCATGY 2 cut(s) 191, 363
OliI CACNNNNGTG 1 cut(s) 326
PciI ACATGT 1 cut(s) 187
PfeI GAWTC 2 cut(s) 54, 251
PkrI GCNGC 2 cut(s) 12, 209
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
Ppu21I YACGTR 1 cut(s) 392
PscI ACATGT 1 cut(s) 187
PspPI GGNCC 1 cut(s) 468
PsuI RGATCY 1 cut(s) 549
RseI CAYNNNNRTG 1 cut(s) 326
SaqAI TTAA 4 cut(s) 72, 89, 222, 498
SatI GCNGC 2 cut(s) 11, 208
Sau3AI GATC 2 cut(s) 142, 549
Sau96I GGNCC 1 cut(s) 468
SchI GAGTC 1 cut(s) 242
SduI GDGCHC 1 cut(s) 444
SinI GGWCC 1 cut(s) 468
SmiMI CAYNNNNRTG 1 cut(s) 326
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
SnaBI TACGTA 1 cut(s) 392
Sse9I AATT 4 cut(s) 74, 237, 246, 344
SsiI CCGC 2 cut(s) 66, 547
SspI AATATT 1 cut(s) 226
SspMI CTAG 2 cut(s) 126, 371
TaaI ACNGT 2 cut(s) 202, 312
TaiI ACGT 6 cut(s) 112, 178, 271, 281, 394, 441
TaqI TCGA 1 cut(s) 165
TasI AATT 4 cut(s) 74, 237, 246, 344
TfiI GAWTC 2 cut(s) 54, 251
Tru1I TTAA 4 cut(s) 72, 89, 222, 498
Tru9I TTAA 4 cut(s) 72, 89, 222, 498
TscAI CASTG 1 cut(s) 42
TseI GCWGC 2 cut(s) 10, 207
TspDTI ATGAA 4 cut(s) 46, 57, 330, 398
TspRI CASTG 1 cut(s) 42
Vha464I CTTAAG 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 468
XapI RAATTY 1 cut(s) 344
XceI RCATGY 2 cut(s) 191, 363
XmiI GTMKAC 1 cut(s) 192
XspI CTAG 2 cut(s) 126, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.