RLG00000023212

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000442
Physical Location & Seq
Reverse (-)
20022774 .. 20024161
1388 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023212

Sequence Viewer

Length: 339 bp
ATGAATAGTATTGGAGAGGAGTCACGACTGATTCGCGACTACTGGAGGTCACTGCGGTGGTGGTCGACTGGCGATCATTGCGATGGTGGTCGACTGGCTGTCACTGCGGTGGGAGAAAGAGATGAGATTAATAGGATCTGGTTTGGTGGACGATTTCCAATGGGTAGTGATGTCGATCCGACGAACTGTGTTGGAGGTAGGCATGCGCAGAGCGGTGGGCTGATTCCCATCTCTGTTGGCGGTGATGAATACGGCGGCTTCTGTGTCGACAGCCGCAATTTAGTTTGGGTTACCGACGGCGTGGTGCGATGCCCAGATGGCTTTGATGGATTGCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.32

Weight (kDa)

5.01

Isoelectric Point (pI)

37.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 207
AccBSI CCGCTC 1 cut(s) 213
AccI GTMKAC 3 cut(s) 65, 91, 267
AccII CGCG 1 cut(s) 36
AciI CCGC 6 cut(s) 55, 107, 213, 240, 255, 274
AclWI GGATC 2 cut(s) 143, 170
AhdI GACNNNNNGTC 1 cut(s) 98
AleI CACNNNNGTG 2 cut(s) 55, 107
AlwI GGATC 2 cut(s) 143, 170
AseI ATTAAT 1 cut(s) 129
AspLEI GCGC 1 cut(s) 208
AsuHPI GGTGA 1 cut(s) 254
BccI CCATC 4 cut(s) 77, 236, 311, 320
BceAI ACGGC 2 cut(s) 268, 313
BglI GCCNNNNNGGC 1 cut(s) 318
BisI GCNGC 2 cut(s) 256, 274
BlsI GCNGC 2 cut(s) 257, 275
BmeRI GACNNNNNGTC 1 cut(s) 98
BmsI GCATC 1 cut(s) 299
BpmI CTGGAG 1 cut(s) 64
BsaBI GATNNNNATC 2 cut(s) 174, 227
Bse1I ACTGG 3 cut(s) 47, 73, 99
Bse3DI GCAATG 1 cut(s) 76
Bse8I GATNNNNATC 2 cut(s) 174, 227
BseJI GATNNNNATC 2 cut(s) 174, 227
BseMI GCAATG 1 cut(s) 76
BseNI ACTGG 3 cut(s) 47, 73, 99
BseRI GAGGAG 1 cut(s) 32
Bsh1236I CGCG 1 cut(s) 36
Bsp143I GATC 3 cut(s) 73, 135, 175
Bsp68I TCGCGA 1 cut(s) 36
BspACI CCGC 6 cut(s) 55, 107, 213, 240, 255, 274
BspFNI CGCG 1 cut(s) 36
BspPI GGATC 2 cut(s) 143, 170
BsrBI CCGCTC 1 cut(s) 213
BsrDI GCAATG 1 cut(s) 76
BsrI ACTGG 3 cut(s) 47, 73, 99
BssMI GATC 3 cut(s) 73, 135, 175
Bst4CI ACNGT 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 204
BstEII GGTNACC 1 cut(s) 289
BstFNI CGCG 1 cut(s) 36
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 3 cut(s) 76, 138, 178
BstMBI GATC 3 cut(s) 73, 135, 175
BstMWI GCNNNNNNNGC 3 cut(s) 78, 104, 318
BstNSI RCATGY 1 cut(s) 206
BstPI GGTNACC 1 cut(s) 289
BstUI CGCG 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 135
BstYI RGATCY 1 cut(s) 135
BtgZI GCGATG 2 cut(s) 96, 322
BtsI GCAGTG 2 cut(s) 50, 102
BtsIMutI CAGTG 2 cut(s) 50, 102
BtuMI TCGCGA 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 204
CfoI GCGC 1 cut(s) 208
CviAII CATG 1 cut(s) 203
CviJI RGCY 5 cut(s) 98, 220, 258, 273, 321
CviKI_1 RGCY 5 cut(s) 98, 220, 258, 273, 321
DpnI GATC 3 cut(s) 75, 137, 177
DpnII GATC 3 cut(s) 73, 135, 175
DriI GACNNNNNGTC 1 cut(s) 98
Eam1105I GACNNNNNGTC 1 cut(s) 98
Eco91I GGTNACC 1 cut(s) 289
EcoO65I GGTNACC 1 cut(s) 289
FaeI CATG 1 cut(s) 206
FaiI YATR 1 cut(s) 204
FatI CATG 1 cut(s) 202
FblI GTMKAC 3 cut(s) 65, 91, 267
Fnu4HI GCNGC 2 cut(s) 256, 274
Fsp4HI GCNGC 2 cut(s) 256, 274
FspI TGCGCA 1 cut(s) 207
GlaI GCGC 1 cut(s) 207
GluI GCNGC 2 cut(s) 256, 274
GsuI CTGGAG 1 cut(s) 64
HhaI GCGC 1 cut(s) 208
Hin1II CATG 1 cut(s) 206
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HincII GTYRAC 3 cut(s) 66, 92, 268
HindII GTYRAC 3 cut(s) 66, 92, 268
HinfI GANTC 3 cut(s) 20, 31, 223
HphI GGTGA 1 cut(s) 254
Hpy166II GTNNAC 4 cut(s) 66, 92, 149, 268
Hpy188I TCNGA 1 cut(s) 180
Hpy188III TCNNGA 2 cut(s) 24, 35
Hpy8I GTNNAC 4 cut(s) 66, 92, 149, 268
Hpy99I CGWCG 2 cut(s) 184, 299
HpyCH4III ACNGT 1 cut(s) 188
HpyF10VI GCNNNNNNNGC 3 cut(s) 78, 104, 318
Hsp92II CATG 1 cut(s) 206
HspAI GCGC 1 cut(s) 206
Kzo9I GATC 3 cut(s) 73, 135, 175
LpnPI CCDG 5 cut(s) 28, 54, 80, 124, 327
LweI GCATC 1 cut(s) 299
MaeIII GTNAC 4 cut(s) 21, 48, 100, 289
MalI GATC 3 cut(s) 75, 137, 177
MbiI CCGCTC 1 cut(s) 213
MboI GATC 3 cut(s) 73, 135, 175
MflI RGATCY 1 cut(s) 135
MluCI AATT 1 cut(s) 277
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 2 cut(s) 172, 203
MnlI CCTC 3 cut(s) 10, 39, 188
MseI TTAA 1 cut(s) 129
MslI CAYNNNNRTG 3 cut(s) 55, 81, 107
MvnI CGCG 1 cut(s) 36
MwoI GCNNNNNNNGC 3 cut(s) 78, 104, 318
NdeII GATC 3 cut(s) 73, 135, 175
NlaIII CATG 1 cut(s) 206
NmuCI GTSAC 3 cut(s) 21, 48, 100
NruI TCGCGA 1 cut(s) 36
NsbI TGCGCA 1 cut(s) 207
NspI RCATGY 1 cut(s) 206
OliI CACNNNNGTG 2 cut(s) 55, 107
PaeI GCATGC 1 cut(s) 206
PfeI GAWTC 2 cut(s) 31, 223
PkrI GCNGC 2 cut(s) 257, 275
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PshBI ATTAAT 1 cut(s) 129
PspEI GGTNACC 1 cut(s) 289
PsuI RGATCY 1 cut(s) 135
RruI TCGCGA 1 cut(s) 36
RseI CAYNNNNRTG 3 cut(s) 55, 81, 107
SalI GTCGAC 3 cut(s) 64, 90, 266
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 2 cut(s) 256, 274
Sau3AI GATC 3 cut(s) 73, 135, 175
SchI GAGTC 1 cut(s) 29
SetI ASST 2 cut(s) 50, 199
SfaNI GCATC 1 cut(s) 299
SgeI CNNG 9 cut(s) 36, 47, 55, 81, 107, 151, 215, 313, 326
SmiMI CAYNNNNRTG 3 cut(s) 55, 81, 107
SphI GCATGC 1 cut(s) 206
Sse9I AATT 1 cut(s) 277
SsiI CCGC 6 cut(s) 55, 107, 213, 240, 255, 274
TaaI ACNGT 1 cut(s) 188
TaqI TCGA 4 cut(s) 65, 91, 174, 267
TasI AATT 1 cut(s) 277
TauI GCSGC 2 cut(s) 258, 276
TfiI GAWTC 2 cut(s) 31, 223
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 2 cut(s) 57, 109
TseFI GTSAC 3 cut(s) 21, 48, 100
Tsp45I GTSAC 3 cut(s) 21, 48, 100
TspDTI ATGAA 2 cut(s) 17, 261
TspRI CASTG 2 cut(s) 57, 109
VspI ATTAAT 1 cut(s) 129
XceI RCATGY 1 cut(s) 206
XmiI GTMKAC 3 cut(s) 65, 91, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.