Rh2CG611800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000442
Physical Location & Seq
Reverse (-)
78951906 .. 78956286
4381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG611800.1

Sequence Viewer

Length: 588 bp
ATGTTAGTGCTGCTTCGCCACCCTTATTTTCAATCAGTGGATGAAGCTCTGAGATTCATTCCATCCACCCTTAAAGAACTTGATGGCTTAAGGGGTAAAACGTTTCCACTTCCAAGAACTGGGCCTAATCAAGCAACCCCCGATCTATTGCTAGTGCCTGACGAACGTCATGTCGATTGGAAACGTGCATACATGCATCTATGCCGCACAAAGAGAGAGAATATTTCAGAGTCAATTGGCAGAATTGAATCTGAAGATTACAGACGTGGATTTACGTCTCTATATAATGCTGGAAAGAATGGCACACCGTATGAAGATACCAATGAGATAGATGAGCTGAAGTTTTATGCAAACATCTGTCAAAATCTAGTAAGATATATGAAGATACGTAGCGAAGGTGATTTATACCAAGCCTTGTGTCGGGCGTTTCCAGACGTGCCCAGAAAAGTGTTCAAGTTTTTCTGGACCTATGACGGGCAAGTTAACTTGGAGTTTGTCAGGCCTCTGATATCATCATGCCTGCATGGGTTATCATTTGAGACACTAGCTGAGACTGATCCTAGGAGATCGAATACAGATAGTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

22.76

Weight (kDa)

6.96

Isoelectric Point (pI)

53.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 119
AciI CCGC 1 cut(s) 205
AclI AACGTT 1 cut(s) 101
AclWI GGATC 1 cut(s) 551
AcuI CTGAAG 2 cut(s) 273, 359
AfiI CCNNNNNNNGG 3 cut(s) 119, 420, 474
AflII CTTAAG 1 cut(s) 88
AgsI TTSAA 3 cut(s) 32, 248, 454
AjiI CACGTC 2 cut(s) 266, 436
AluBI AGCT 3 cut(s) 47, 337, 548
AluI AGCT 3 cut(s) 47, 337, 548
Alw26I GTCTC 3 cut(s) 282, 533, 545
AlwI GGATC 1 cut(s) 551
AoxI GGCC 2 cut(s) 122, 500
ApeKI GCWGC 1 cut(s) 10
ArsI GACNNNNNNTTYG 2 cut(s) 156, 188
AspA2I CCTAGG 1 cut(s) 560
AspS9I GGNCC 2 cut(s) 122, 465
AsuHPI GGTGA 1 cut(s) 410
AvaII GGWCC 1 cut(s) 465
AvrII CCTAGG 1 cut(s) 560
BaeGI GKGCMC 1 cut(s) 441
BccI CCATC 2 cut(s) 70, 77
BcoDI GTCTC 3 cut(s) 282, 533, 545
BfaI CTAG 5 cut(s) 152, 368, 545, 561, 586
BfrI CTTAAG 1 cut(s) 88
BisI GCNGC 2 cut(s) 11, 205
BlnI CCTAGG 1 cut(s) 560
BlsI GCNGC 2 cut(s) 12, 206
Bme18I GGWCC 1 cut(s) 465
BmgBI CACGTC 2 cut(s) 266, 436
BmgT120I GGNCC 2 cut(s) 122, 465
BmrI ACTGGG 1 cut(s) 129
BmsI GCATC 1 cut(s) 205
BmuI ACTGGG 1 cut(s) 129
BoxI GACNNNNGTC 1 cut(s) 165
BsaAI YACGTR 1 cut(s) 389
BsaJI CCNNGG 1 cut(s) 560
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 420, 474
Bse1I ACTGG 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 560
BseGI GGATG 2 cut(s) 46, 62
BseLI CCNNNNNNNGG 3 cut(s) 119, 420, 474
BseMII CTCAG 2 cut(s) 41, 540
BseNI ACTGG 1 cut(s) 124
BseSI GKGCMC 1 cut(s) 441
BshFI GGCC 2 cut(s) 124, 502
BslI CCNNNNNNNGG 3 cut(s) 119, 420, 474
BsmAI GTCTC 3 cut(s) 282, 533, 545
BsmBI CGTCTC 1 cut(s) 282
BsnI GGCC 2 cut(s) 124, 502
Bsp1286I GDGCHC 1 cut(s) 441
Bsp143I GATC 3 cut(s) 142, 556, 566
BspACI CCGC 1 cut(s) 205
BspANI GGCC 2 cut(s) 124, 502
BspCNI CTCAG 2 cut(s) 42, 541
BspPI GGATC 1 cut(s) 551
BspTI CTTAAG 1 cut(s) 88
BsrI ACTGG 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 560
BssMI GATC 3 cut(s) 142, 556, 566
BssT1I CCWWGG 1 cut(s) 560
Bst4CI ACNGT 1 cut(s) 309
BstAFI CTTAAG 1 cut(s) 88
BstBAI YACGTR 1 cut(s) 389
BstC8I GCNNGC 1 cut(s) 521
BstDEI CTNAG 2 cut(s) 50, 549
BstF5I GGATG 2 cut(s) 46, 62
BstKTI GATC 3 cut(s) 145, 559, 569
BstMAI GTCTC 3 cut(s) 282, 533, 545
BstMBI GATC 3 cut(s) 142, 556, 566
BstNSI RCATGY 1 cut(s) 196
BstPAI GACNNNNGTC 1 cut(s) 165
BstSLI GKGCMC 1 cut(s) 441
BstSNI TACGTA 1 cut(s) 389
BsuRI GGCC 2 cut(s) 124, 502
BtrI CACGTC 2 cut(s) 266, 436
BtsCI GGATG 2 cut(s) 46, 62
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 521
Cfr13I GGNCC 2 cut(s) 122, 465
CviAII CATG 4 cut(s) 170, 193, 516, 524
CviJI RGCY 7 cut(s) 47, 87, 124, 337, 413, 502, 548
CviKI_1 RGCY 7 cut(s) 47, 87, 124, 337, 413, 502, 548
DdeI CTNAG 2 cut(s) 50, 549
DpnI GATC 3 cut(s) 144, 558, 568
DpnII GATC 3 cut(s) 142, 556, 566
Eco105I TACGTA 1 cut(s) 389
Eco130I CCWWGG 1 cut(s) 560
Eco147I AGGCCT 1 cut(s) 502
Eco32I GATATC 1 cut(s) 510
Eco47I GGWCC 1 cut(s) 465
Eco57I CTGAAG 2 cut(s) 273, 359
EcoRV GATATC 1 cut(s) 510
EcoT14I CCWWGG 1 cut(s) 560
EcoT22I ATGCAT 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 560
Esp3I CGTCTC 1 cut(s) 282
FaeI CATG 4 cut(s) 173, 196, 519, 527
FatI CATG 4 cut(s) 169, 192, 515, 523
Fnu4HI GCNGC 2 cut(s) 11, 205
FokI GGATG 2 cut(s) 49, 53
Fsp4HI GCNGC 2 cut(s) 11, 205
FspBI CTAG 5 cut(s) 152, 368, 545, 561, 586
GluI GCNGC 2 cut(s) 11, 205
HaeIII GGCC 2 cut(s) 124, 502
Hin1II CATG 4 cut(s) 173, 196, 519, 527
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HinfI GANTC 3 cut(s) 54, 230, 248
HpaI GTTAAC 1 cut(s) 484
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 1 cut(s) 484
Hpy188I TCNGA 4 cut(s) 51, 229, 253, 507
Hpy188III TCNNGA 2 cut(s) 431, 463
Hpy8I GTNNAC 1 cut(s) 484
HpyAV CCTTC 1 cut(s) 389
HpyCH4III ACNGT 1 cut(s) 309
HpyCH4IV ACGT 7 cut(s) 101, 166, 184, 265, 275, 388, 435
HpyCH4V TGCA 4 cut(s) 188, 196, 350, 523
HpyF3I CTNAG 2 cut(s) 50, 549
HpySE526I ACGT 7 cut(s) 101, 166, 184, 265, 275, 388, 435
Hsp92II CATG 4 cut(s) 173, 196, 519, 527
KspAI GTTAAC 1 cut(s) 484
Kzo9I GATC 3 cut(s) 142, 556, 566
LpnPI CCDG 8 cut(s) 105, 171, 276, 444, 448, 454, 484, 533
LweI GCATC 1 cut(s) 205
MaeI CTAG 5 cut(s) 152, 368, 545, 561, 586
MaeII ACGT 7 cut(s) 101, 166, 184, 265, 275, 388, 435
MaeIII GTNAC 1 cut(s) 581
MalI GATC 3 cut(s) 144, 558, 568
MboI GATC 3 cut(s) 142, 556, 566
MboII GAAGA 3 cut(s) 266, 326, 394
MfeI CAATTG 1 cut(s) 234
MhlI GDGCHC 1 cut(s) 441
MluCI AATT 2 cut(s) 234, 243
MlyI GAGTC 1 cut(s) 239
MnlI CCTC 1 cut(s) 513
Mph1103I ATGCAT 1 cut(s) 198
MseI TTAA 3 cut(s) 72, 89, 483
MspCI CTTAAG 1 cut(s) 88
MunI CAATTG 1 cut(s) 234
NdeII GATC 3 cut(s) 142, 556, 566
NlaIII CATG 4 cut(s) 173, 196, 519, 527
NmuCI GTSAC 1 cut(s) 581
NsiI ATGCAT 1 cut(s) 198
NspI RCATGY 1 cut(s) 196
PceI AGGCCT 1 cut(s) 502
PfeI GAWTC 2 cut(s) 54, 248
PflMI CCANNNNNTGG 1 cut(s) 119
PkrI GCNGC 2 cut(s) 12, 206
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
Ppu21I YACGTR 1 cut(s) 389
PshAI GACNNNNGTC 1 cut(s) 165
Psp1406I AACGTT 1 cut(s) 101
PspPI GGNCC 2 cut(s) 122, 465
SaqAI TTAA 3 cut(s) 72, 89, 483
SatI GCNGC 2 cut(s) 11, 205
Sau3AI GATC 3 cut(s) 142, 556, 566
Sau96I GGNCC 2 cut(s) 122, 465
SchI GAGTC 1 cut(s) 239
SduI GDGCHC 1 cut(s) 441
SfaNI GCATC 1 cut(s) 205
SinI GGWCC 1 cut(s) 465
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
SnaBI TACGTA 1 cut(s) 389
Sse9I AATT 2 cut(s) 234, 243
SseBI AGGCCT 1 cut(s) 502
SsiI CCGC 1 cut(s) 205
SspI AATATT 1 cut(s) 223
SspMI CTAG 5 cut(s) 152, 368, 545, 561, 586
StuI AGGCCT 1 cut(s) 502
StyI CCWWGG 1 cut(s) 560
TaaI ACNGT 1 cut(s) 309
TaiI ACGT 7 cut(s) 104, 169, 187, 268, 278, 391, 438
TaqI TCGA 2 cut(s) 174, 569
TasI AATT 2 cut(s) 234, 243
TauI GCSGC 1 cut(s) 207
TfiI GAWTC 2 cut(s) 54, 248
Tru1I TTAA 3 cut(s) 72, 89, 483
Tru9I TTAA 3 cut(s) 72, 89, 483
TscAI CASTG 1 cut(s) 42
TseFI GTSAC 1 cut(s) 581
TseI GCWGC 1 cut(s) 10
Tsp45I GTSAC 1 cut(s) 581
TspDTI ATGAA 4 cut(s) 46, 57, 327, 395
TspRI CASTG 1 cut(s) 42
Van91I CCANNNNNTGG 1 cut(s) 119
Vha464I CTTAAG 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 465
XceI RCATGY 1 cut(s) 196
XmaJI CCTAGG 1 cut(s) 560
XspI CTAG 5 cut(s) 152, 368, 545, 561, 586
Zsp2I ATGCAT 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.