FvH4_6g46860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000442
Physical Location & Seq
Reverse (-)
35639395 .. 35642979
3585 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g46860.t2

Sequence Viewer

Length: 942 bp
ATGGGGTTTCTTGGTGGCATTTTGAGGAAATACGGCAGCAATTCCATTGTTGGCAATTTGAAGCCGGGGTTGAATTTTAGCACTACACGTGGCTCATTGGGAATTTGTCTAGAGGATATTAAGCAAAGGGGAACATCAGAGCAGAAGAAAGTTTGCATGAGGAAAATACTTGAAGCAATGACATCGAGGATGGGACAAGGCTATCTAGGTGGATGCATGGACCCAACAAAAATTCCCATCATCGAAAACGGTCTGGACTTACCACACGAGCCATATGTGGAAGGAAAATATCCTAGTTACTTGTCTTCAGTAGAGAATCTAGCTGTTTATCTTCATGAGAATGATCAATTAAGTACCCGAGACAAAATGAAATTTGACGATTTCAAGAAGTATTCAAGGTTATTGAGCAACACGAGACATTTAGCCTTGTTGGCTGGGCACCCTCATCTGCAAGCAACATGGGAGGAGAGGGACTACATAACAGCAGCACTTCATCAACTGTCGTCGATCACATCTGCCGACCCCTTCTTTCCGCTACCTCCCACCGGTTGCCATCAAGTGCCACTTGCATTGGCATTTACATGTCCACGAGAACTTAAATTCACATGGATTGGCGCATATAAAAGAGTATGTATCACAAGGAAGATAGATATTTTTGCTACAATCGAGCATGCCGGTAAAGAATTTGTAAACAATTACGAGTATTCGGAGGAAGACGACAAGCCATATTCATATACAAATAATGATGCTATAGATGAGTTGTTTTACTATAGCAATTTTACTAAGCATTACTGTGTAGATGGGGATACCAAGTTGCTTGACACCTTGCATGACAAGTTTCCCTTCAACACCAGAGAGATGTTCAAGTTTCATTCGACGTATGATAAGCATGCTATGGGAAAAGTTGATCTCGAACGCCTCATGGGCATCATGAACAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

314

Amino Acids

35.83

Weight (kDa)

6.86

Isoelectric Point (pI)

25.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 438
AciI CCGC 1 cut(s) 533
AcsI RAATTY 6 cut(s) 73, 102, 231, 371, 599, 683
AcuI CTGAAG 1 cut(s) 291
AcvI CACGTG 1 cut(s) 89
AfaI GTAC 1 cut(s) 355
AfiI CCNNNNNNNGG 1 cut(s) 545
AflIII ACRYGT 2 cut(s) 86, 581
AgeI ACCGGT 1 cut(s) 545
AgsI TTSAA 7 cut(s) 61, 73, 173, 385, 396, 847, 865
AluBI AGCT 1 cut(s) 323
AluI AGCT 1 cut(s) 323
Alw26I GTCTC 2 cut(s) 354, 409
Ama87I CYCGRG 1 cut(s) 357
ApeKI GCWGC 2 cut(s) 36, 485
ApoI RAATTY 6 cut(s) 73, 102, 231, 371, 599, 683
AsiGI ACCGGT 1 cut(s) 545
AspLEI GCGC 1 cut(s) 617
AspS9I GGNCC 1 cut(s) 220
AsuC2I CCSGG 1 cut(s) 66
AvaI CYCGRG 1 cut(s) 357
AvaII GGWCC 1 cut(s) 220
BaeGI GKGCMC 1 cut(s) 441
BanI GGYRCC 1 cut(s) 438
BauI CACGAG 3 cut(s) 266, 412, 588
BbrPI CACGTG 1 cut(s) 89
BbsI GAAGAC 2 cut(s) 297, 720
BbvI GCAGC 2 cut(s) 48, 497
BccI CCATC 4 cut(s) 184, 245, 561, 794
BceAI ACGGC 1 cut(s) 49
BcgI CGANNNNNNTGC 2 cut(s) 165, 199
BciVI GTATCC 1 cut(s) 799
BclI TGATCA 1 cut(s) 343
BcnI CCSGG 1 cut(s) 66
BcoDI GTCTC 2 cut(s) 354, 409
BfaI CTAG 4 cut(s) 110, 206, 294, 320
BfmI CTRYAG 2 cut(s) 750, 769
BfuI GTATCC 1 cut(s) 799
BglI GCCNNNNNGGC 2 cut(s) 431, 924
BisI GCNGC 2 cut(s) 37, 486
BlsI GCNGC 2 cut(s) 38, 487
Bme1390I CCNGG 1 cut(s) 66
Bme18I GGWCC 1 cut(s) 220
BmeT110I CYCGRG 1 cut(s) 357
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 2 cut(s) 222, 440
BmrFI CCNGG 1 cut(s) 66
BmsI GCATC 3 cut(s) 203, 736, 936
BpiI GAAGAC 2 cut(s) 297, 720
BpuMI CCSGG 1 cut(s) 66
BsaAI YACGTR 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 65
BsaWI WCCGGW 1 cut(s) 545
Bsc4I CCNNNNNNNGG 1 cut(s) 545
Bse118I RCCGGY 2 cut(s) 545, 674
Bse3DI GCAATG 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 65
BseGI GGATG 2 cut(s) 195, 218
BseLI CCNNNNNNNGG 1 cut(s) 545
BseMI GCAATG 1 cut(s) 183
BseRI GAGGAG 1 cut(s) 479
BseSI GKGCMC 1 cut(s) 441
BseXI GCAGC 2 cut(s) 48, 497
BseYI CCCAGC 1 cut(s) 434
BshNI GGYRCC 1 cut(s) 438
BshTI ACCGGT 1 cut(s) 545
BsiHKCI CYCGRG 1 cut(s) 357
BsiSI CCGG 3 cut(s) 65, 546, 675
BslFI GGGAC 2 cut(s) 207, 485
BslI CCNNNNNNNGG 1 cut(s) 545
BsmAI GTCTC 2 cut(s) 354, 409
BsmFI GGGAC 2 cut(s) 207, 485
BsoBI CYCGRG 1 cut(s) 357
Bsp1286I GDGCHC 1 cut(s) 441
Bsp143I GATC 3 cut(s) 343, 507, 907
BspACI CCGC 1 cut(s) 533
BspHI TCATGA 2 cut(s) 334, 930
BspLI GGNNCC 2 cut(s) 222, 440
BspT107I GGYRCC 1 cut(s) 438
BsrDI GCAATG 1 cut(s) 183
BsrFI RCCGGY 2 cut(s) 545, 674
BssAI RCCGGY 2 cut(s) 545, 674
BssECI CCNNGG 1 cut(s) 65
BssMI GATC 3 cut(s) 343, 507, 907
BssSI CACGAG 3 cut(s) 266, 412, 588
Bst2BI CACGAG 3 cut(s) 266, 412, 588
Bst4CI ACNGT 3 cut(s) 251, 501, 794
BstBAI YACGTR 1 cut(s) 89
BstC8I GCNNGC 3 cut(s) 453, 672, 891
BstDEI CTNAG 1 cut(s) 783
BstF5I GGATG 2 cut(s) 195, 218
BstHHI GCGC 1 cut(s) 617
BstKTI GATC 3 cut(s) 346, 510, 910
BstMAI GTCTC 2 cut(s) 354, 409
BstMBI GATC 3 cut(s) 343, 507, 907
BstMWI GCNNNNNNNGC 2 cut(s) 431, 924
BstNSI RCATGY 3 cut(s) 585, 674, 893
BstSCI CCNGG 1 cut(s) 64
BstSFI CTRYAG 2 cut(s) 750, 769
BstSLI GKGCMC 1 cut(s) 441
BstV1I GCAGC 2 cut(s) 48, 497
BstV2I GAAGAC 2 cut(s) 297, 720
BsuI GTATCC 1 cut(s) 799
BtsCI GGATG 2 cut(s) 195, 218
Cac8I GCNNGC 3 cut(s) 453, 672, 891
CciI TCATGA 2 cut(s) 334, 930
CfoI GCGC 1 cut(s) 617
Cfr10I RCCGGY 2 cut(s) 545, 674
Cfr13I GGNCC 1 cut(s) 220
Csp6I GTAC 1 cut(s) 354
CspAI ACCGGT 1 cut(s) 545
CspCI CAANNNNNGTGG 2 cut(s) 552, 587
CviJI RGCY 8 cut(s) 64, 93, 201, 271, 323, 425, 434, 724
CviKI_1 RGCY 8 cut(s) 64, 93, 201, 271, 323, 425, 434, 724
CviQI GTAC 1 cut(s) 354
DdeI CTNAG 1 cut(s) 783
DpnI GATC 3 cut(s) 345, 509, 909
DpnII GATC 3 cut(s) 343, 507, 907
Eco47I GGWCC 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 291
Eco72I CACGTG 1 cut(s) 89
Eco88I CYCGRG 1 cut(s) 357
EcoT22I ATGCAT 1 cut(s) 218
FalI AAGNNNNNCTT 4 cut(s) 549, 581, 827, 859
FaqI GGGAC 2 cut(s) 207, 485
FauNDI CATATG 1 cut(s) 274
FbaI TGATCA 1 cut(s) 343
Fnu4HI GCNGC 2 cut(s) 37, 486
FokI GGATG 2 cut(s) 202, 225
Fsp4HI GCNGC 2 cut(s) 37, 486
FspBI CTAG 4 cut(s) 110, 206, 294, 320
GlaI GCGC 1 cut(s) 616
GluI GCNGC 2 cut(s) 37, 486
GsaI CCCAGC 1 cut(s) 438
HapII CCGG 3 cut(s) 65, 546, 675
HhaI GCGC 1 cut(s) 617
Hin6I GCGC 1 cut(s) 615
HinP1I GCGC 1 cut(s) 615
HinfI GANTC 1 cut(s) 316
HpaII CCGG 3 cut(s) 65, 546, 675
Hpy166II GTNNAC 2 cut(s) 587, 691
Hpy188I TCNGA 2 cut(s) 139, 709
Hpy188III TCNNGA 6 cut(s) 110, 254, 335, 385, 911, 931
Hpy8I GTNNAC 2 cut(s) 587, 691
Hpy99I CGWCG 2 cut(s) 508, 880
HpyAV CCTTC 3 cut(s) 275, 535, 853
HpyCH4III ACNGT 3 cut(s) 251, 501, 794
HpyCH4IV ACGT 2 cut(s) 88, 878
HpyCH4V TGCA 5 cut(s) 156, 216, 451, 569, 829
HpyF10VI GCNNNNNNNGC 2 cut(s) 431, 924
HpyF3I CTNAG 1 cut(s) 783
HpySE526I ACGT 2 cut(s) 88, 878
HspAI GCGC 1 cut(s) 615
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 3 cut(s) 343, 507, 907
LpnPI CCDG 7 cut(s) 78, 239, 420, 559, 688, 865, 922
Lsp1109I GCAGC 2 cut(s) 48, 497
LweI GCATC 3 cut(s) 203, 736, 936
MaeI CTAG 4 cut(s) 110, 206, 294, 320
MaeII ACGT 2 cut(s) 88, 878
MaeIII GTNAC 1 cut(s) 296
MalI GATC 3 cut(s) 345, 509, 909
MboI GATC 3 cut(s) 343, 507, 907
MboII GAAGA 5 cut(s) 157, 297, 323, 655, 725
MhlI GDGCHC 1 cut(s) 441
Mph1103I ATGCAT 1 cut(s) 218
MseI TTAA 3 cut(s) 120, 350, 597
MslI CAYNNNNRTG 3 cut(s) 339, 580, 792
MspI CCGG 3 cut(s) 65, 546, 675
MspR9I CCNGG 1 cut(s) 66
MwoI GCNNNNNNNGC 2 cut(s) 431, 924
NciI CCSGG 1 cut(s) 66
NdeI CATATG 1 cut(s) 274
NdeII GATC 3 cut(s) 343, 507, 907
NlaIV GGNNCC 2 cut(s) 222, 440
NsiI ATGCAT 1 cut(s) 218
NspI RCATGY 3 cut(s) 585, 674, 893
PaeI GCATGC 2 cut(s) 674, 893
PagI TCATGA 2 cut(s) 334, 930
PciI ACATGT 1 cut(s) 581
PfeI GAWTC 1 cut(s) 316
PinAI ACCGGT 1 cut(s) 545
PkrI GCNGC 2 cut(s) 38, 487
PmaCI CACGTG 1 cut(s) 89
PmlI CACGTG 1 cut(s) 89
Ppu21I YACGTR 1 cut(s) 89
PscI ACATGT 1 cut(s) 581
PspCI CACGTG 1 cut(s) 89
PspFI CCCAGC 1 cut(s) 434
PspN4I GGNNCC 2 cut(s) 222, 440
PspPI GGNCC 1 cut(s) 220
RsaI GTAC 1 cut(s) 355
RsaNI GTAC 1 cut(s) 354
RseI CAYNNNNRTG 3 cut(s) 339, 580, 792
SaqAI TTAA 3 cut(s) 120, 350, 597
SatI GCNGC 2 cut(s) 37, 486
Sau3AI GATC 3 cut(s) 343, 507, 907
Sau96I GGNCC 1 cut(s) 220
ScrFI CCNGG 1 cut(s) 66
SduI GDGCHC 1 cut(s) 441
SetI ASST 8 cut(s) 91, 211, 325, 401, 541, 827, 881, 941
SfaNI GCATC 3 cut(s) 203, 736, 936
SfcI CTRYAG 2 cut(s) 750, 769
SinI GGWCC 1 cut(s) 220
SmiMI CAYNNNNRTG 3 cut(s) 339, 580, 792
SphI GCATGC 2 cut(s) 674, 893
SsiI CCGC 1 cut(s) 533
SspMI CTAG 4 cut(s) 110, 206, 294, 320
StyD4I CCNGG 1 cut(s) 64
TaaI ACNGT 3 cut(s) 251, 501, 794
TaiI ACGT 2 cut(s) 91, 881
TaqI TCGA 6 cut(s) 185, 243, 506, 666, 875, 912
TfiI GAWTC 1 cut(s) 316
Tru1I TTAA 3 cut(s) 120, 350, 597
Tru9I TTAA 3 cut(s) 120, 350, 597
TseI GCWGC 2 cut(s) 36, 485
TspDTI ATGAA 5 cut(s) 323, 383, 482, 720, 860
VpaK11BI GGWCC 1 cut(s) 220
XapI RAATTY 6 cut(s) 73, 102, 231, 371, 599, 683
XbaI TCTAGA 1 cut(s) 109
XceI RCATGY 3 cut(s) 585, 674, 893
XspI CTAG 4 cut(s) 110, 206, 294, 320
Zsp2I ATGCAT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.