Rh2DG653100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000442
Physical Location & Seq
Forward (+)
87825095 .. 87825640
546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG653100.1

Sequence Viewer

Length: 546 bp
ATGGCCAGCCTACCATTTCCCAAGTTGTACCTTGAAGAGGTGAAGCTAGAGGCAGAACTGGACATTAAGAAGGCTTGGGTCAGAGCTGTACTTCAACGGATTATATGGAGAATGTCCAAGGGCATCAACAGTGGATCCCTGGACCCTAAGCTAATTCAAATCATTGACAACAGACCTGTTTTGCCGGAGGAAGCAGTCATAGAGGGCATACATCCACCGTACCTTCTCGCCATCAAGTCCTTCGTCACTGATTTCCATGCCAGTGACTATCCAAAGATGAGCCCAAGGGACCGGCTGCAGTACGATGACTTTGTGTCTTTTTTAGACACACTCACCACTCTGTATGTGCTACCTTCCCTCTTTTTCTTTCCATTTGCAAGTTATGGATCTGCAACATGTGCATTTGTTGCTTTTATGTACGTTTTATCACTTGTTCCTATTGCTCTTTCCCATCTACTGTCCATTTTGAAAGAAAATTGCATATATCTGATGGCTCTCTCTGACCCATGGTATTGGATGTTATCTGATAGTAGTTCGTATTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

20.7

Weight (kDa)

5.31

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 129, 142, 394
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 5 cut(s) 29, 90, 221, 302, 419
AfiI CCNNNNNNNGG 1 cut(s) 37
AflIII ACRYGT 1 cut(s) 395
AgsI TTSAA 4 cut(s) 35, 95, 158, 469
AhdI GACNNNNNGTC 1 cut(s) 313
AjnI CCWGG 1 cut(s) 138
AluBI AGCT 3 cut(s) 46, 86, 151
AluI AGCT 3 cut(s) 46, 86, 151
AlwI GGATC 3 cut(s) 129, 142, 394
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 295
AspS9I GGNCC 2 cut(s) 142, 289
AsuHPI GGTGA 2 cut(s) 52, 325
AvaII GGWCC 2 cut(s) 142, 289
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 134
BanII GRGCYC 1 cut(s) 284
BbvI GCAGC 1 cut(s) 282
BccI CCATC 3 cut(s) 239, 459, 484
BciT130I CCWGG 1 cut(s) 140
BfaI CTAG 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 296
BisI GCNGC 1 cut(s) 296
BlsI GCNGC 1 cut(s) 297
Bme1390I CCNGG 1 cut(s) 140
Bme18I GGWCC 2 cut(s) 142, 289
BmeRI GACNNNNNGTC 1 cut(s) 313
BmgT120I GGNCC 2 cut(s) 142, 289
BmiI GGNNCC 3 cut(s) 136, 144, 290
BmrFI CCNGG 1 cut(s) 140
BmsI GCATC 1 cut(s) 132
Bpu10I CCTNAGC 1 cut(s) 147
BsaJI CCNNGG 4 cut(s) 117, 138, 284, 506
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse118I RCCGGY 1 cut(s) 291
Bse1I ACTGG 2 cut(s) 63, 261
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 4 cut(s) 117, 138, 284, 506
BseGI GGATG 2 cut(s) 211, 522
BseLI CCNNNNNNNGG 1 cut(s) 37
BseNI ACTGG 2 cut(s) 63, 261
BseXI GCAGC 1 cut(s) 282
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 2 cut(s) 185, 292
BslFI GGGAC 1 cut(s) 302
BslI CCNNNNNNNGG 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 302
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 284
Bsp143I GATC 2 cut(s) 134, 386
Bsp19I CCATGG 1 cut(s) 506
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 3 cut(s) 136, 144, 290
BspMAI CTGCAG 1 cut(s) 300
BspPI GGATC 3 cut(s) 129, 142, 394
BsrFI RCCGGY 1 cut(s) 291
BsrI ACTGG 2 cut(s) 63, 261
BssAI RCCGGY 1 cut(s) 291
BssECI CCNNGG 4 cut(s) 117, 138, 284, 506
BssMI GATC 2 cut(s) 134, 386
BssT1I CCWWGG 3 cut(s) 117, 284, 506
Bst2UI CCWGG 1 cut(s) 140
Bst4CI ACNGT 3 cut(s) 131, 219, 459
Bst6I CTCTTC 1 cut(s) 30
BstAPI GCANNNNNTGC 2 cut(s) 398, 407
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 147
BstDSI CCRYGG 1 cut(s) 506
BstENI CCTNNNNNAGG 1 cut(s) 35
BstF5I GGATG 2 cut(s) 211, 522
BstKTI GATC 2 cut(s) 137, 389
BstMBI GATC 2 cut(s) 134, 386
BstMWI GCNNNNNNNGC 2 cut(s) 398, 407
BstNI CCWGG 1 cut(s) 140
BstNSI RCATGY 1 cut(s) 399
BstSCI CCNGG 1 cut(s) 138
BstSFI CTRYAG 1 cut(s) 296
BstV1I GCAGC 1 cut(s) 282
BstX2I RGATCY 2 cut(s) 134, 386
BstXI CCANNNNNNTGG 1 cut(s) 513
BstYI RGATCY 2 cut(s) 134, 386
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 506
BtsCI GGATG 2 cut(s) 211, 522
BtsIMutI CAGTG 3 cut(s) 136, 246, 268
Cac8I GCNNGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 291
Cfr13I GGNCC 2 cut(s) 142, 289
Csp6I GTAC 5 cut(s) 28, 89, 220, 301, 418
CviAII CATG 3 cut(s) 257, 396, 507
CviJI RGCY 9 cut(s) 5, 9, 46, 74, 86, 151, 282, 295, 494
CviKI_1 RGCY 9 cut(s) 5, 9, 46, 74, 86, 151, 282, 295, 494
CviQI GTAC 5 cut(s) 28, 89, 220, 301, 418
DdeI CTNAG 1 cut(s) 147
DpnI GATC 2 cut(s) 136, 388
DpnII GATC 2 cut(s) 134, 386
DriI GACNNNNNGTC 1 cut(s) 313
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 30
Eam1105I GACNNNNNGTC 1 cut(s) 313
EarI CTCTTC 1 cut(s) 30
Eco130I CCWWGG 3 cut(s) 117, 284, 506
Eco24I GRGCYC 1 cut(s) 284
Eco47I GGWCC 2 cut(s) 142, 289
EcoNI CCTNNNNNAGG 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 138
EcoT14I CCWWGG 3 cut(s) 117, 284, 506
EcoT38I GRGCYC 1 cut(s) 284
ErhI CCWWGG 3 cut(s) 117, 284, 506
FaeI CATG 3 cut(s) 260, 399, 510
FaqI GGGAC 1 cut(s) 302
FatI CATG 3 cut(s) 256, 395, 506
Fnu4HI GCNGC 1 cut(s) 296
FokI GGATG 2 cut(s) 198, 529
FriOI GRGCYC 1 cut(s) 284
Fsp4HI GCNGC 1 cut(s) 296
FspBI CTAG 1 cut(s) 47
GluI GCNGC 1 cut(s) 296
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 185, 292
Hin1II CATG 3 cut(s) 260, 399, 510
HpaII CCGG 2 cut(s) 185, 292
HphI GGTGA 2 cut(s) 52, 325
Hpy188I TCNGA 4 cut(s) 83, 489, 502, 526
HpyAV CCTTC 4 cut(s) 64, 233, 250, 363
HpyCH4III ACNGT 3 cut(s) 131, 219, 459
HpyCH4IV ACGT 1 cut(s) 420
HpyCH4V TGCA 5 cut(s) 298, 377, 392, 401, 480
HpyF10VI GCNNNNNNNGC 2 cut(s) 398, 407
HpyF3I CTNAG 1 cut(s) 147
HpySE526I ACGT 1 cut(s) 420
Hsp92II CATG 3 cut(s) 260, 399, 510
Kzo9I GATC 2 cut(s) 134, 386
LpnPI CCDG 8 cut(s) 19, 44, 125, 152, 189, 198, 274, 305
Lsp1109I GCAGC 1 cut(s) 282
LweI GCATC 1 cut(s) 132
MaeI CTAG 1 cut(s) 47
MaeII ACGT 1 cut(s) 420
MaeIII GTNAC 2 cut(s) 244, 263
MalI GATC 2 cut(s) 136, 388
MboI GATC 2 cut(s) 134, 386
MboII GAAGA 1 cut(s) 47
MflI RGATCY 2 cut(s) 134, 386
MhlI GDGCHC 1 cut(s) 284
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 153, 475
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 5 cut(s) 31, 43, 181, 196, 368
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 66
MslI CAYNNNNRTG 1 cut(s) 261
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 185, 292
MspR9I CCNGG 1 cut(s) 140
MvaI CCWGG 1 cut(s) 140
MwoI GCNNNNNNNGC 2 cut(s) 398, 407
NcoI CCATGG 1 cut(s) 506
NdeII GATC 2 cut(s) 134, 386
NlaIII CATG 3 cut(s) 260, 399, 510
NlaIV GGNNCC 3 cut(s) 136, 144, 290
NmuCI GTSAC 2 cut(s) 244, 263
NspI RCATGY 1 cut(s) 399
PciI ACATGT 1 cut(s) 395
PkrI GCNGC 1 cut(s) 297
PscI ACATGT 1 cut(s) 395
Psp6I CCWGG 1 cut(s) 138
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 3 cut(s) 136, 144, 290
PspPI GGNCC 2 cut(s) 142, 289
PstI CTGCAG 1 cut(s) 300
PsuI RGATCY 2 cut(s) 134, 386
RsaI GTAC 5 cut(s) 29, 90, 221, 302, 419
RsaNI GTAC 5 cut(s) 28, 89, 220, 301, 418
RseI CAYNNNNRTG 1 cut(s) 261
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 1 cut(s) 296
Sau3AI GATC 2 cut(s) 134, 386
Sau96I GGNCC 2 cut(s) 142, 289
ScrFI CCNGG 1 cut(s) 140
SduI GDGCHC 1 cut(s) 284
SetI ASST 9 cut(s) 33, 42, 48, 88, 153, 178, 225, 355, 423
SfaNI GCATC 1 cut(s) 132
SfcI CTRYAG 1 cut(s) 296
SinI GGWCC 2 cut(s) 142, 289
SmiMI CAYNNNNRTG 1 cut(s) 261
Sse9I AATT 2 cut(s) 153, 475
SspMI CTAG 1 cut(s) 47
StyD4I CCNGG 1 cut(s) 138
StyI CCWWGG 3 cut(s) 117, 284, 506
TaaI ACNGT 3 cut(s) 131, 219, 459
TaiI ACGT 1 cut(s) 423
TasI AATT 2 cut(s) 153, 475
TatI WGTACW 1 cut(s) 88
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 3 cut(s) 136, 253, 268
TseFI GTSAC 2 cut(s) 244, 263
TseI GCWGC 1 cut(s) 295
Tsp45I GTSAC 2 cut(s) 244, 263
TspGWI ACGGA 1 cut(s) 112
TspRI CASTG 3 cut(s) 136, 253, 268
VpaK11BI GGWCC 2 cut(s) 142, 289
XagI CCTNNNNNAGG 1 cut(s) 35
XceI RCATGY 1 cut(s) 399
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.