Rroxscaffold_4G00323360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000442
Physical Location & Seq
Forward (+)
54074117 .. 54075531
1415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00323360.1

Sequence Viewer

Length: 651 bp
ATGACACTTGGGATTGGGACAAGGAATGCTTTGTTTCTCCCGCAGATACGGGGATGGCTTGTCCCGCCGGATGACAATTGGCAGTCCGTGCATAGTCATGGTTCAGCGGCGAAGCTTCTCTCTCTCCCGATTAGGCCGGATGGTGAGCGTCGGTGTCCGAAATGGCAGGAAGATGAGGTTGACCCGTTTGTGTTAGGCAGTAATGAAGTCGTCGGCGGCCGAGGGGTGTTTCCCTCGACCGGTGTCGGCGACGGTGCAACTAGTGGTTGTTGGCCGGAAGGACACTTTCTCTGCTCCGCCGACAAACCCGATCGCACCGATCCTTCGTTTTCTTCTCCCACCGCTAATCGGTTATCGCAATCTTCAACTTCTTTTGCACCTGCCACCGCAATGTCGACCAAGCCCTCCACTTCCTCGACCACCTTCGCCTCTGTGGCTACCGCACCGACTTGCTCAACCTTAGCGGCGTCATCCATACTCTCTGCGACTCCAATTTCCTCGAAGAAGCCCACCACCGCTTTGTCCACTCCATTGACTCGTATTGAGTCCTTGACTAGCGCAACTGCAACGTCATCATCGCTAGGCTACTCGATTCCCAACCCCACACATCACGTTGGGTGTTCTTCGCATTTTGAGTGCACCGAAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

22.51

Weight (kDa)

6.28

Isoelectric Point (pI)

46.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 388
Acc36I ACCTGC 1 cut(s) 388
AccI GTMKAC 1 cut(s) 395
AclWI GGATC 1 cut(s) 314
AcoI YGGCCR 2 cut(s) 217, 272
AcyI GRCGYC 1 cut(s) 467
AfiI CCNNNNNNNGG 2 cut(s) 239, 348
AgeI ACCGGT 1 cut(s) 239
AgsI TTSAA 1 cut(s) 366
AhlI ACTAGT 1 cut(s) 260
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
Alw21I GWGCWC 1 cut(s) 641
Alw44I GTGCAC 1 cut(s) 637
AlwI GGATC 1 cut(s) 314
AoxI GGCC 3 cut(s) 134, 217, 272
ApaLI GTGCAC 1 cut(s) 637
AsiGI ACCGGT 1 cut(s) 239
AspLEI GCGC 1 cut(s) 560
AsuHPI GGTGA 1 cut(s) 155
BaeGI GKGCMC 1 cut(s) 641
Bbv12I GWGCWC 1 cut(s) 641
BccI CCATC 2 cut(s) 48, 134
BcuI ACTAGT 1 cut(s) 260
BfaI CTAG 3 cut(s) 261, 555, 581
BfuAI ACCTGC 1 cut(s) 388
BglI GCCNNNNNGGC 1 cut(s) 434
BisI GCNGC 3 cut(s) 108, 217, 465
BlsI GCNGC 3 cut(s) 109, 218, 466
BoxI GACNNNNGTC 1 cut(s) 242
Bpu10I CCTNAGC 1 cut(s) 460
BsaHI GRCGYC 1 cut(s) 467
BsaJI CCNNGG 1 cut(s) 220
BsaWI WCCGGW 1 cut(s) 239
Bsc4I CCNNNNNNNGG 2 cut(s) 239, 348
Bse118I RCCGGY 1 cut(s) 239
Bse3DI GCAATG 1 cut(s) 396
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 4 cut(s) 59, 76, 145, 470
BseLI CCNNNNNNNGG 2 cut(s) 239, 348
BseMI GCAATG 1 cut(s) 396
BseSI GKGCMC 1 cut(s) 641
BseX3I CGGCCG 1 cut(s) 217
Bsh1285I CGRYCG 3 cut(s) 220, 240, 313
BshFI GGCC 3 cut(s) 136, 219, 274
BshTI ACCGGT 1 cut(s) 239
BsiEI CGRYCG 3 cut(s) 220, 240, 313
BsiHKAI GWGCWC 1 cut(s) 641
BsiSI CCGG 4 cut(s) 68, 137, 240, 275
BslFI GGGAC 2 cut(s) 31, 47
BslI CCNNNNNNNGG 2 cut(s) 239, 348
BsmFI GGGAC 2 cut(s) 31, 47
BsmI GAATGC 1 cut(s) 31
BsnI GGCC 3 cut(s) 136, 219, 274
Bsp1286I GDGCHC 1 cut(s) 641
Bsp143I GATC 2 cut(s) 310, 319
BspANI GGCC 3 cut(s) 136, 219, 274
BspMI ACCTGC 1 cut(s) 388
BspPI GGATC 1 cut(s) 314
BsrDI GCAATG 1 cut(s) 396
BsrFI RCCGGY 1 cut(s) 239
BssAI RCCGGY 1 cut(s) 239
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 2 cut(s) 310, 319
BssNI GRCGYC 1 cut(s) 467
Bst4CI ACNGT 1 cut(s) 254
BstACI GRCGYC 1 cut(s) 467
BstAPI GCANNNNNTGC 1 cut(s) 88
BstDEI CTNAG 1 cut(s) 460
BstF5I GGATG 4 cut(s) 59, 76, 145, 470
BstHHI GCGC 1 cut(s) 560
BstKTI GATC 2 cut(s) 313, 322
BstMBI GATC 2 cut(s) 310, 319
BstMCI CGRYCG 3 cut(s) 220, 240, 313
BstMWI GCNNNNNNNGC 3 cut(s) 64, 88, 434
BstPAI GACNNNNGTC 1 cut(s) 242
BstSLI GKGCMC 1 cut(s) 641
BstZI CGGCCG 1 cut(s) 217
BsuRI GGCC 3 cut(s) 136, 219, 274
BtgZI GCGATG 1 cut(s) 561
BtsCI GGATG 4 cut(s) 59, 76, 145, 470
BveI ACCTGC 1 cut(s) 388
CfoI GCGC 1 cut(s) 560
Cfr10I RCCGGY 1 cut(s) 239
CseI GACGC 2 cut(s) 137, 456
CspAI ACCGGT 1 cut(s) 239
CviAII CATG 1 cut(s) 98
DdeI CTNAG 1 cut(s) 460
DpnI GATC 2 cut(s) 312, 321
DpnII GATC 2 cut(s) 310, 319
EaeI YGGCCR 2 cut(s) 217, 272
EagI CGGCCG 1 cut(s) 217
EciI GGCGGA 1 cut(s) 286
EclXI CGGCCG 1 cut(s) 217
Eco52I CGGCCG 1 cut(s) 217
FaeI CATG 1 cut(s) 101
FaiI YATR 3 cut(s) 93, 99, 476
FalI AAGNNNNNCTT 2 cut(s) 13, 45
FaqI GGGAC 2 cut(s) 31, 47
FatI CATG 1 cut(s) 97
FauI CCCGC 2 cut(s) 48, 72
FblI GTMKAC 1 cut(s) 395
Fnu4HI GCNGC 3 cut(s) 108, 217, 465
FokI GGATG 4 cut(s) 66, 83, 152, 457
Fsp4HI GCNGC 3 cut(s) 108, 217, 465
FspBI CTAG 3 cut(s) 261, 555, 581
GlaI GCGC 1 cut(s) 559
GluI GCNGC 3 cut(s) 108, 217, 465
HaeIII GGCC 3 cut(s) 136, 219, 274
HapII CCGG 4 cut(s) 68, 137, 240, 275
HgaI GACGC 2 cut(s) 137, 456
HhaI GCGC 1 cut(s) 560
Hin1I GRCGYC 1 cut(s) 467
Hin1II CATG 1 cut(s) 101
Hin6I GCGC 1 cut(s) 558
HinP1I GCGC 1 cut(s) 558
HincII GTYRAC 2 cut(s) 181, 396
HindII GTYRAC 2 cut(s) 181, 396
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 4 cut(s) 487, 535, 545, 592
HpaII CCGG 4 cut(s) 68, 137, 240, 275
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 4 cut(s) 181, 396, 525, 639
Hpy188I TCNGA 1 cut(s) 159
Hpy188III TCNNGA 1 cut(s) 127
Hpy8I GTNNAC 4 cut(s) 181, 396, 525, 639
Hpy99I CGWCG 3 cut(s) 153, 215, 254
HpyAV CCTTC 3 cut(s) 272, 333, 433
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4IV ACGT 2 cut(s) 569, 612
HpyCH4V TGCA 5 cut(s) 91, 257, 377, 566, 639
HpyF10VI GCNNNNNNNGC 3 cut(s) 64, 88, 434
HpyF3I CTNAG 1 cut(s) 460
HpySE526I ACGT 2 cut(s) 569, 612
Hsp92I GRCGYC 1 cut(s) 467
Hsp92II CATG 1 cut(s) 101
HspAI GCGC 1 cut(s) 558
Kzo9I GATC 2 cut(s) 310, 319
LmnI GCTCC 1 cut(s) 299
LpnPI CCDG 6 cut(s) 81, 150, 152, 253, 288, 393
MaeI CTAG 3 cut(s) 261, 555, 581
MaeII ACGT 2 cut(s) 569, 612
MalI GATC 2 cut(s) 312, 321
MboI GATC 2 cut(s) 310, 319
MboII GAAGA 5 cut(s) 182, 324, 354, 514, 615
MfeI CAATTG 1 cut(s) 76
MhlI GDGCHC 1 cut(s) 641
MluCI AATT 2 cut(s) 76, 492
MlyI GAGTC 3 cut(s) 481, 529, 554
MnlI CCTC 7 cut(s) 169, 215, 244, 415, 424, 439, 508
MslI CAYNNNNRTG 2 cut(s) 96, 389
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 4 cut(s) 68, 137, 240, 275
MunI CAATTG 1 cut(s) 76
Mva1269I GAATGC 1 cut(s) 31
MwoI GCNNNNNNNGC 3 cut(s) 64, 88, 434
NdeII GATC 2 cut(s) 310, 319
NlaIII CATG 1 cut(s) 101
NmeAIII GCCGAG 1 cut(s) 245
PaqCI CACCTGC 1 cut(s) 388
PctI GAATGC 1 cut(s) 31
PfeI GAWTC 1 cut(s) 592
PinAI ACCGGT 1 cut(s) 239
PkrI GCNGC 3 cut(s) 109, 218, 466
Ple19I CGATCG 1 cut(s) 313
PleI GAGTC 3 cut(s) 481, 529, 553
PpsI GAGTC 3 cut(s) 481, 529, 553
PshAI GACNNNNGTC 1 cut(s) 242
PvuI CGATCG 1 cut(s) 313
RseI CAYNNNNRTG 2 cut(s) 96, 389
SalI GTCGAC 1 cut(s) 394
SatI GCNGC 3 cut(s) 108, 217, 465
Sau3AI GATC 2 cut(s) 310, 319
SchI GAGTC 3 cut(s) 481, 529, 554
SduI GDGCHC 1 cut(s) 641
SetI ASST 7 cut(s) 117, 180, 382, 425, 461, 572, 615
SmiMI CAYNNNNRTG 2 cut(s) 96, 389
SpeI ACTAGT 1 cut(s) 260
Sse9I AATT 2 cut(s) 76, 492
SspMI CTAG 3 cut(s) 261, 555, 581
TaaI ACNGT 1 cut(s) 254
TaiI ACGT 2 cut(s) 572, 615
TaqI TCGA 5 cut(s) 236, 395, 416, 500, 590
TasI AATT 2 cut(s) 76, 492
TauI GCSGC 3 cut(s) 110, 219, 467
TfiI GAWTC 1 cut(s) 592
TspDTI ATGAA 1 cut(s) 219
TspGWI ACGGA 1 cut(s) 76
VneI GTGCAC 1 cut(s) 637
XmiI GTMKAC 1 cut(s) 395
XspI CTAG 3 cut(s) 261, 555, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.