Rorug02G0556000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000442
Physical Location & Seq
Reverse (-)
68282281 .. 68284273
1993 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0556000.1

Sequence Viewer

Length: 1038 bp
ATGGCAATGGAACAAGTGGTGGTGCCAAAGCCATTGATGATCTCCTTAGAGGAGGAACACAAAAACTGCGTAAACTATGCATTCAGGTGCAGTTGGGATATTTCAAGAGAGAAGAACCTGGTTTGTGTGACCAGTGGGAATTCTTACCTGGGTTCTCACATAGTCAGGGCTCTTTTGGCTCGCGGATATCTGGTTCGAGTCACCATTCAAAACCAAGAGGATTATGAAGACATGAAGAAGCTAATGAGAGATGAAGAGATAAACCAACTAGAAAGTGTTGTTGTGGCAAAGATGGGAAACTTGGATAGGCTTTGTGATGCTTTTAGGGGCTGCCATGCAATTTTTCATACTTCCTCCTTCATTGATCCACATGGTGTCTCTGGTTATTCTGGACAAATGGCATTTCTTGAAACTGAAGGGGCAAAGAATGTGATCGAAGCTTGTGGCAGGGCAGCGTATGCAAAGAGATGCATATTCACTTCCTCTCTTCTTGCTTCTATTTGGACAGGTGATAGTGAAAACAAGATCATTGATGAGTTTAGCTGGAGCAATGAAGAATTCTGCAGGGAAAACAAGCTTTGGCTGGCTTTGGGGAAGACCACTGCAGAGATGGCTTGTTGGAGAAAGTCAAAGGAAATGAAAGTCAATCTTGTGACAGTTTGCCCTGGCCTTCTCATGGACTCATATGCTCACAAGGACAGCTCTATACCCTATCTTAAAGGTGGCAAGGACATGCTCAAAAATGGTCACCTAGCCATTGAGGATGTGAAGAAGGCCGCAGAGGCGCACGTCTATGTATATGAGGCCATGGATAATGGAGCATGTGGGAGATACCTGTGCTTTGGGAAGGTTGTAAGAACAAGAAGTGAAGCCCTTGAACTAGAAAACGTGTTAAGGGTTCAGGGTTTGTTATCAGGAGGAAGCATTGACGTTTTTGGTGAAGAAGCAGGTGCAGAAATAAACAGCATGCTTGGTAATGCAAAGCTGGTCAGATTGATTCAAGCTTCTCAAAGATTATCGTGCAAGCCAGTAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

345

Amino Acids

38.42

Weight (kDa)

6.28

Isoelectric Point (pI)

36.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 41 - 222 2.2e-07 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 43 - 191 1.4e-10 3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_10 PF13460 49 - 167 7.5e-07 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 938
Acc36I ACCTGC 1 cut(s) 938
AccB1I GGYRCC 1 cut(s) 22
AccII CGCG 1 cut(s) 183
AciI CCGC 2 cut(s) 183, 777
AclWI GGATC 1 cut(s) 359
AcsI RAATTY 2 cut(s) 139, 557
AcuI CTGAAG 1 cut(s) 435
AdeI CACNNNGTG 1 cut(s) 374
AfiI CCNNNNNNNGG 1 cut(s) 676
AflIII ACRYGT 1 cut(s) 888
AgsI TTSAA 5 cut(s) 105, 209, 410, 878, 1001
AjiI CACGTC 1 cut(s) 790
AjnI CCWGG 3 cut(s) 117, 147, 664
AloI GAACNNNNNNTCC 2 cut(s) 177, 209
AluBI AGCT 7 cut(s) 241, 440, 543, 577, 702, 985, 1004
AluI AGCT 7 cut(s) 241, 440, 543, 577, 702, 985, 1004
Alw26I GTCTC 1 cut(s) 382
AlwI GGATC 1 cut(s) 359
AoxI GGCC 3 cut(s) 667, 774, 804
ApeKI GCWGC 2 cut(s) 330, 452
ApoI RAATTY 2 cut(s) 139, 557
AspLEI GCGC 1 cut(s) 787
AsuHPI GGTGA 4 cut(s) 193, 521, 740, 950
BanI GGYRCC 1 cut(s) 22
BanII GRGCYC 1 cut(s) 172
BbsI GAAGAC 2 cut(s) 234, 602
BbvI GCAGC 2 cut(s) 317, 464
BccI CCATC 2 cut(s) 286, 604
BciT130I CCWGG 3 cut(s) 119, 149, 666
BcoDI GTCTC 1 cut(s) 382
BfaI CTAG 3 cut(s) 269, 752, 881
BfmI CTRYAG 2 cut(s) 562, 603
BfuAI ACCTGC 1 cut(s) 938
BglI GCCNNNNNGGC 1 cut(s) 782
BisI GCNGC 3 cut(s) 331, 453, 777
BlsI GCNGC 3 cut(s) 332, 454, 778
Bme1390I CCNGG 3 cut(s) 119, 149, 666
BmgBI CACGTC 1 cut(s) 790
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 3 cut(s) 119, 149, 666
BmsI GCATC 2 cut(s) 307, 458
BpiI GAAGAC 2 cut(s) 234, 602
BpmI CTGGAG 1 cut(s) 565
BsaJI CCNNGG 3 cut(s) 148, 664, 807
Bsc4I CCNNNNNNNGG 1 cut(s) 676
Bse1I ACTGG 2 cut(s) 132, 1028
Bse3DI GCAATG 2 cut(s) 12, 556
BseBI CCWGG 3 cut(s) 119, 149, 666
BseDI CCNNGG 3 cut(s) 148, 664, 807
BseGI GGATG 1 cut(s) 769
BseLI CCNNNNNNNGG 1 cut(s) 676
BseMI GCAATG 2 cut(s) 12, 556
BseNI ACTGG 2 cut(s) 132, 1028
BseRI GAGGAG 1 cut(s) 65
BseXI GCAGC 2 cut(s) 317, 464
BsgI GTGCAG 2 cut(s) 109, 972
Bsh1236I CGCG 1 cut(s) 183
BshFI GGCC 3 cut(s) 669, 776, 806
BshNI GGYRCC 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 676
BsmAI GTCTC 1 cut(s) 382
BsmI GAATGC 1 cut(s) 80
BsnI GGCC 3 cut(s) 669, 776, 806
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 4 cut(s) 39, 364, 432, 525
Bsp19I CCATGG 1 cut(s) 807
BspACI CCGC 2 cut(s) 183, 777
BspANI GGCC 3 cut(s) 669, 776, 806
BspFNI CGCG 1 cut(s) 183
BspLI GGNNCC 1 cut(s) 24
BspMAI CTGCAG 2 cut(s) 566, 607
BspMI ACCTGC 1 cut(s) 938
BspPI GGATC 1 cut(s) 359
BspT107I GGYRCC 1 cut(s) 22
BsrDI GCAATG 2 cut(s) 12, 556
BsrI ACTGG 2 cut(s) 132, 1028
BssECI CCNNGG 3 cut(s) 148, 664, 807
BssMI GATC 4 cut(s) 39, 364, 432, 525
BssT1I CCWWGG 1 cut(s) 807
Bst2UI CCWGG 3 cut(s) 119, 149, 666
Bst4CI ACNGT 1 cut(s) 658
Bst6I CTCTTC 2 cut(s) 249, 492
BstAPI GCANNNNNTGC 1 cut(s) 458
BstC8I GCNNGC 4 cut(s) 181, 585, 968, 1025
BstDEI CTNAG 1 cut(s) 46
BstDSI CCRYGG 1 cut(s) 807
BstEII GGTNACC 1 cut(s) 746
BstF5I GGATG 1 cut(s) 769
BstFNI CGCG 1 cut(s) 183
BstHHI GCGC 1 cut(s) 787
BstKTI GATC 4 cut(s) 42, 367, 435, 528
BstMAI GTCTC 1 cut(s) 382
BstMBI GATC 4 cut(s) 39, 364, 432, 525
BstMWI GCNNNNNNNGC 4 cut(s) 176, 458, 611, 782
BstNI CCWGG 3 cut(s) 119, 149, 666
BstNSI RCATGY 3 cut(s) 736, 825, 970
BstPI GGTNACC 1 cut(s) 746
BstSCI CCNGG 3 cut(s) 117, 147, 664
BstSFI CTRYAG 2 cut(s) 562, 603
BstUI CGCG 1 cut(s) 183
BstV1I GCAGC 2 cut(s) 317, 464
BstV2I GAAGAC 2 cut(s) 234, 602
BsuRI GGCC 3 cut(s) 669, 776, 806
BtgI CCRYGG 1 cut(s) 807
BtrI CACGTC 1 cut(s) 790
BtsCI GGATG 1 cut(s) 769
BtsI GCAGTG 1 cut(s) 600
BtsIMutI CAGTG 2 cut(s) 139, 600
BveI ACCTGC 1 cut(s) 938
Cac8I GCNNGC 4 cut(s) 181, 585, 968, 1025
CfoI GCGC 1 cut(s) 787
CsiI ACCWGGT 1 cut(s) 117
CviAII CATG 8 cut(s) 232, 335, 371, 676, 733, 808, 822, 967
DdeI CTNAG 1 cut(s) 46
DpnI GATC 4 cut(s) 41, 366, 434, 527
DpnII GATC 4 cut(s) 39, 364, 432, 525
DraIII CACNNNGTG 1 cut(s) 374
Eam1104I CTCTTC 2 cut(s) 249, 492
EarI CTCTTC 2 cut(s) 249, 492
Eco130I CCWWGG 1 cut(s) 807
Eco24I GRGCYC 1 cut(s) 172
Eco32I GATATC 1 cut(s) 188
Eco57I CTGAAG 1 cut(s) 435
Eco91I GGTNACC 1 cut(s) 746
EcoO65I GGTNACC 1 cut(s) 746
EcoRI GAATTC 2 cut(s) 139, 557
EcoRII CCWGG 3 cut(s) 117, 147, 664
EcoRV GATATC 1 cut(s) 188
EcoT14I CCWWGG 1 cut(s) 807
EcoT22I ATGCAT 2 cut(s) 82, 473
EcoT38I GRGCYC 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 807
FaeI CATG 8 cut(s) 235, 338, 374, 679, 736, 811, 825, 970
FalI AAGNNNNNCTT 2 cut(s) 633, 665
FatI CATG 8 cut(s) 231, 334, 370, 675, 732, 807, 821, 966
FauNDI CATATG 1 cut(s) 685
Fnu4HI GCNGC 3 cut(s) 331, 453, 777
FokI GGATG 1 cut(s) 776
FriOI GRGCYC 1 cut(s) 172
Fsp4HI GCNGC 3 cut(s) 331, 453, 777
FspBI CTAG 3 cut(s) 269, 752, 881
GlaI GCGC 1 cut(s) 786
GluI GCNGC 3 cut(s) 331, 453, 777
GsuI CTGGAG 1 cut(s) 565
HaeIII GGCC 3 cut(s) 669, 776, 806
HhaI GCGC 1 cut(s) 787
Hin1II CATG 8 cut(s) 235, 338, 374, 679, 736, 811, 825, 970
Hin6I GCGC 1 cut(s) 785
HinP1I GCGC 1 cut(s) 785
HindIII AAGCTT 3 cut(s) 438, 575, 1002
HinfI GANTC 3 cut(s) 198, 680, 997
HphI GGTGA 4 cut(s) 193, 521, 740, 950
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 1 cut(s) 992
Hpy188III TCNNGA 4 cut(s) 105, 390, 407, 915
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 5 cut(s) 367, 410, 680, 766, 841
HpyCH4III ACNGT 1 cut(s) 658
HpyCH4IV ACGT 3 cut(s) 789, 888, 930
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 458, 611, 782
HpyF3I CTNAG 1 cut(s) 46
HpySE526I ACGT 3 cut(s) 789, 888, 930
Hsp92II CATG 8 cut(s) 235, 338, 374, 679, 736, 811, 825, 970
HspAI GCGC 1 cut(s) 785
Kzo9I GATC 4 cut(s) 39, 364, 432, 525
LmnI GCTCC 2 cut(s) 546, 818
Lsp1109I GCAGC 2 cut(s) 317, 464
LweI GCATC 2 cut(s) 307, 458
MabI ACCWGGT 1 cut(s) 117
MaeI CTAG 3 cut(s) 269, 752, 881
MaeII ACGT 3 cut(s) 789, 888, 930
MaeIII GTNAC 4 cut(s) 127, 199, 652, 746
MalI GATC 4 cut(s) 41, 366, 434, 527
MboI GATC 4 cut(s) 39, 364, 432, 525
MboII GAAGA 9 cut(s) 124, 239, 247, 266, 479, 566, 607, 781, 953
MhlI GDGCHC 1 cut(s) 172
MluCI AATT 3 cut(s) 139, 339, 557
MlyI GAGTC 2 cut(s) 207, 674
MmeI TCCRAC 1 cut(s) 599
MnlI CCTC 9 cut(s) 43, 46, 211, 364, 493, 754, 775, 796, 911
Mph1103I ATGCAT 2 cut(s) 82, 473
MseI TTAA 2 cut(s) 717, 893
MslI CAYNNNNRTG 2 cut(s) 85, 792
MspR9I CCNGG 3 cut(s) 119, 149, 666
Mva1269I GAATGC 1 cut(s) 80
MvaI CCWGG 3 cut(s) 119, 149, 666
MvnI CGCG 1 cut(s) 183
MwoI GCNNNNNNNGC 4 cut(s) 176, 458, 611, 782
NcoI CCATGG 1 cut(s) 807
NdeI CATATG 1 cut(s) 685
NdeII GATC 4 cut(s) 39, 364, 432, 525
NlaIII CATG 8 cut(s) 235, 338, 374, 679, 736, 811, 825, 970
NlaIV GGNNCC 1 cut(s) 24
NmuCI GTSAC 4 cut(s) 127, 199, 652, 746
NsiI ATGCAT 2 cut(s) 82, 473
NspI RCATGY 3 cut(s) 736, 825, 970
PaeI GCATGC 1 cut(s) 970
PaqCI CACCTGC 1 cut(s) 938
PctI GAATGC 1 cut(s) 80
PfeI GAWTC 1 cut(s) 997
PkrI GCNGC 3 cut(s) 332, 454, 778
PleI GAGTC 2 cut(s) 206, 674
PpsI GAGTC 2 cut(s) 206, 674
Psp6I CCWGG 3 cut(s) 117, 147, 664
PspEI GGTNACC 1 cut(s) 746
PspGI CCWGG 3 cut(s) 117, 147, 664
PspN4I GGNNCC 1 cut(s) 24
PstI CTGCAG 2 cut(s) 566, 607
RseI CAYNNNNRTG 2 cut(s) 85, 792
SaqAI TTAA 2 cut(s) 717, 893
SatI GCNGC 3 cut(s) 331, 453, 777
Sau3AI GATC 4 cut(s) 39, 364, 432, 525
SchI GAGTC 2 cut(s) 207, 674
ScrFI CCNGG 3 cut(s) 119, 149, 666
SduI GDGCHC 1 cut(s) 172
SexAI ACCWGGT 1 cut(s) 117
SfaNI GCATC 2 cut(s) 307, 458
SfcI CTRYAG 2 cut(s) 562, 603
SmiMI CAYNNNNRTG 2 cut(s) 85, 792
SphI GCATGC 1 cut(s) 970
Sse9I AATT 3 cut(s) 139, 339, 557
SsiI CCGC 2 cut(s) 183, 777
SspMI CTAG 3 cut(s) 269, 752, 881
StyD4I CCNGG 3 cut(s) 117, 147, 664
StyI CCWWGG 1 cut(s) 807
TaaI ACNGT 1 cut(s) 658
TaiI ACGT 3 cut(s) 792, 891, 933
TaqI TCGA 2 cut(s) 196, 435
TasI AATT 3 cut(s) 139, 339, 557
TauI GCSGC 1 cut(s) 779
TfiI GAWTC 1 cut(s) 997
Tru1I TTAA 2 cut(s) 717, 893
Tru9I TTAA 2 cut(s) 717, 893
TscAI CASTG 2 cut(s) 139, 607
TseFI GTSAC 4 cut(s) 127, 199, 652, 746
TseI GCWGC 2 cut(s) 330, 452
Tsp45I GTSAC 4 cut(s) 127, 199, 652, 746
TspDTI ATGAA 7 cut(s) 240, 248, 267, 335, 349, 567, 653
TspRI CASTG 2 cut(s) 139, 607
XapI RAATTY 2 cut(s) 139, 557
XceI RCATGY 3 cut(s) 736, 825, 970
XcmI CCANNNNNNNNNTGG 1 cut(s) 607
XspI CTAG 3 cut(s) 269, 752, 881
Zsp2I ATGCAT 2 cut(s) 82, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.