RLG00000019517

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000442
Physical Location & Seq
Reverse (-)
53034735 .. 53036264
1530 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019517

Sequence Viewer

Length: 681 bp
ATGACTTCGACTCTCGGGAGAGAGAAATATCGCCGGTCTCTCTCTTGGGAAAGCGGCGGCGACAAAACTACTCGTCTGCTTCTCTCTTCGAGTTGCGATGGCGACAAATCTTTTCGTCAGACTCTATCTTCCGTTAGAGGAGGCGTATTTGCTGTATTTGATGGTGATTGGGTTCTAGTTCACCGGATCTGGTTTGGTGGAAGATTCCCAATTGGCAGTGATGTCGTTCCGACTAATTGTACTGGAGGCTGGCATGCACAGAGTGGTGGACTGATTCCTAGATCTGTTGGCGGTGATGATTGCAGAGGCTTCTGTGCCGACGGCGGCAATTTGGTGTGGGCTACTGACGACGTGGTGCGATGCCCAGATGGCCTTGCTGGATCGCGATTGGTTTTAGGTCGGGGATGTGACCGGATCTGGTTTTGTGGAGACGTAAAGGATCCGGATCTTGGTGGCGGCGCTAGGGTCGCGCTTTTGGGATGGTTGGAGATGGCAGAGTCCGTCGATTGTCATGGGTTGGCGGGGAAGCTTCTCTCTCCGCATTCAGACTGGATGGCCAGTGTTGGTGTCCGAATTGGCAGGGAAGACGACGTTGACCCGTCTGAGTTGGGAAGTAATGAAGTCGATGGCGGCTGCGGGGTTAGTAGTAGTAGTAGTAGTAATACCCTTTCTTATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

23.97

Weight (kDa)

5.05

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 385, 470
AccIII TCCGGA 1 cut(s) 442
AciI CCGC 9 cut(s) 54, 57, 291, 324, 456, 521, 539, 630, 636
AclWI GGATC 6 cut(s) 194, 388, 422, 434, 447, 453
AcoI YGGCCR 1 cut(s) 555
AdeI CACNNNGTG 1 cut(s) 263
AfaI GTAC 1 cut(s) 241
AfiI CCNNNNNNNGG 1 cut(s) 449
AjiI CACGTC 1 cut(s) 352
AluBI AGCT 1 cut(s) 529
AluI AGCT 1 cut(s) 529
Alw26I GTCTC 2 cut(s) 42, 423
AlwI GGATC 6 cut(s) 194, 388, 422, 434, 447, 453
Ama87I CYCGRG 1 cut(s) 14
Aor13HI TCCGGA 1 cut(s) 442
AoxI GGCC 2 cut(s) 370, 555
ApeKI GCWGC 1 cut(s) 633
AspLEI GCGC 2 cut(s) 461, 472
AsuHPI GGTGA 3 cut(s) 173, 176, 305
AvaI CYCGRG 1 cut(s) 14
BalI TGGCCA 1 cut(s) 557
BamHI GGATCC 1 cut(s) 439
BbsI GAAGAC 1 cut(s) 591
BbvI GCAGC 1 cut(s) 620
BccI CCATC 7 cut(s) 92, 155, 362, 474, 484, 547, 620
BceAI ACGGC 1 cut(s) 337
BcgI CGANNNNNNTGC 2 cut(s) 205, 239
BcoDI GTCTC 2 cut(s) 42, 423
BfaI CTAG 3 cut(s) 176, 279, 462
BfoI RGCGCY 1 cut(s) 462
BglI GCCNNNNNGGC 1 cut(s) 369
BglII AGATCT 1 cut(s) 281
BisI GCNGC 6 cut(s) 55, 58, 325, 457, 631, 634
BlsI GCNGC 6 cut(s) 56, 59, 326, 458, 632, 635
BmeT110I CYCGRG 1 cut(s) 14
BmgBI CACGTC 1 cut(s) 352
BmiI GGNNCC 1 cut(s) 441
BmsI GCATC 1 cut(s) 350
BpiI GAAGAC 1 cut(s) 591
BpmI CTGGAG 1 cut(s) 264
BsaBI GATNNNNATC 1 cut(s) 444
BsaI GGTCTC 1 cut(s) 42
BsaWI WCCGGW 3 cut(s) 183, 411, 442
Bsc4I CCNNNNNNNGG 1 cut(s) 449
Bse118I RCCGGY 1 cut(s) 33
Bse1I ACTGG 3 cut(s) 247, 554, 558
Bse8I GATNNNNATC 1 cut(s) 444
BseAI TCCGGA 1 cut(s) 442
BseGI GGATG 3 cut(s) 410, 485, 558
BseJI GATNNNNATC 1 cut(s) 444
BseLI CCNNNNNNNGG 1 cut(s) 449
BseMII CTCAG 1 cut(s) 594
BseNI ACTGG 3 cut(s) 247, 554, 558
BseRI GAGGAG 1 cut(s) 153
BseXI GCAGC 1 cut(s) 620
Bsh1236I CGCG 2 cut(s) 385, 470
BshFI GGCC 2 cut(s) 372, 557
BsiHKCI CYCGRG 1 cut(s) 14
BsiSI CCGG 4 cut(s) 34, 184, 412, 443
BslI CCNNNNNNNGG 1 cut(s) 449
BsmAI GTCTC 2 cut(s) 42, 423
BsmBI CGTCTC 1 cut(s) 423
BsmI GAATGC 1 cut(s) 541
BsnI GGCC 2 cut(s) 372, 557
Bso31I GGTCTC 1 cut(s) 42
BsoBI CYCGRG 1 cut(s) 14
Bsp13I TCCGGA 1 cut(s) 442
Bsp143I GATC 6 cut(s) 186, 281, 380, 414, 439, 445
Bsp68I TCGCGA 1 cut(s) 385
BspACI CCGC 9 cut(s) 54, 57, 291, 324, 456, 521, 539, 630, 636
BspANI GGCC 2 cut(s) 372, 557
BspCNI CTCAG 1 cut(s) 595
BspEI TCCGGA 1 cut(s) 442
BspFNI CGCG 2 cut(s) 385, 470
BspLI GGNNCC 1 cut(s) 441
BspPI GGATC 6 cut(s) 194, 388, 422, 434, 447, 453
BspTNI GGTCTC 1 cut(s) 42
BsrFI RCCGGY 1 cut(s) 33
BsrI ACTGG 3 cut(s) 247, 554, 558
BssAI RCCGGY 1 cut(s) 33
BssMI GATC 6 cut(s) 186, 281, 380, 414, 439, 445
Bst6I CTCTTC 1 cut(s) 91
BstC8I GCNNGC 2 cut(s) 251, 255
BstDEI CTNAG 1 cut(s) 603
BstF5I GGATG 3 cut(s) 410, 485, 558
BstFNI CGCG 2 cut(s) 385, 470
BstH2I RGCGCY 1 cut(s) 462
BstHHI GCGC 2 cut(s) 461, 472
BstKTI GATC 6 cut(s) 189, 284, 383, 417, 442, 448
BstMAI GTCTC 2 cut(s) 42, 423
BstMBI GATC 6 cut(s) 186, 281, 380, 414, 439, 445
BstMWI GCNNNNNNNGC 2 cut(s) 369, 467
BstNSI RCATGY 1 cut(s) 257
BstUI CGCG 2 cut(s) 385, 470
BstV1I GCAGC 1 cut(s) 620
BstV2I GAAGAC 1 cut(s) 591
BstX2I RGATCY 5 cut(s) 186, 281, 414, 439, 445
BstYI RGATCY 5 cut(s) 186, 281, 414, 439, 445
BsuRI GGCC 2 cut(s) 372, 557
BtgZI GCGATG 2 cut(s) 111, 373
BtrI CACGTC 1 cut(s) 352
BtsCI GGATG 3 cut(s) 410, 485, 558
BtsI GCAGTG 1 cut(s) 223
BtsIMutI CAGTG 2 cut(s) 223, 565
BtuMI TCGCGA 1 cut(s) 385
Cac8I GCNNGC 2 cut(s) 251, 255
CfoI GCGC 2 cut(s) 461, 472
Cfr10I RCCGGY 1 cut(s) 33
Csp6I GTAC 1 cut(s) 240
CviAII CATG 2 cut(s) 254, 512
CviJI RGCY 7 cut(s) 249, 309, 341, 372, 529, 557, 633
CviKI_1 RGCY 7 cut(s) 249, 309, 341, 372, 529, 557, 633
CviQI GTAC 1 cut(s) 240
DdeI CTNAG 1 cut(s) 603
DpnI GATC 6 cut(s) 188, 283, 382, 416, 441, 447
DpnII GATC 6 cut(s) 186, 281, 380, 414, 439, 445
DraIII CACNNNGTG 1 cut(s) 263
EaeI YGGCCR 1 cut(s) 555
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
Eco31I GGTCTC 1 cut(s) 42
Eco88I CYCGRG 1 cut(s) 14
Esp3I CGTCTC 1 cut(s) 423
FaeI CATG 2 cut(s) 257, 515
FaiI YATR 2 cut(s) 255, 513
FatI CATG 2 cut(s) 253, 511
FauI CCCGC 2 cut(s) 514, 629
Fnu4HI GCNGC 6 cut(s) 55, 58, 325, 457, 631, 634
FokI GGATG 3 cut(s) 417, 492, 565
Fsp4HI GCNGC 6 cut(s) 55, 58, 325, 457, 631, 634
FspBI CTAG 3 cut(s) 176, 279, 462
GlaI GCGC 2 cut(s) 460, 471
GluI GCNGC 6 cut(s) 55, 58, 325, 457, 631, 634
GsuI CTGGAG 1 cut(s) 264
HaeII RGCGCY 1 cut(s) 462
HaeIII GGCC 2 cut(s) 372, 557
HapII CCGG 4 cut(s) 34, 184, 412, 443
HhaI GCGC 2 cut(s) 461, 472
Hin1II CATG 2 cut(s) 257, 515
Hin6I GCGC 2 cut(s) 459, 470
HinP1I GCGC 2 cut(s) 459, 470
HincII GTYRAC 1 cut(s) 595
HindII GTYRAC 1 cut(s) 595
HindIII AAGCTT 1 cut(s) 527
HinfI GANTC 5 cut(s) 10, 121, 204, 274, 497
HpaII CCGG 4 cut(s) 34, 184, 412, 443
HphI GGTGA 3 cut(s) 173, 176, 305
Hpy166II GTNNAC 3 cut(s) 181, 269, 595
Hpy188I TCNGA 5 cut(s) 120, 231, 547, 572, 604
Hpy188III TCNNGA 3 cut(s) 16, 384, 443
Hpy8I GTNNAC 3 cut(s) 181, 269, 595
Hpy99I CGWCG 4 cut(s) 323, 353, 506, 593
HpyCH4IV ACGT 3 cut(s) 351, 432, 591
HpyCH4V TGCA 2 cut(s) 257, 303
HpyF10VI GCNNNNNNNGC 2 cut(s) 369, 467
HpyF3I CTNAG 1 cut(s) 603
HpySE526I ACGT 3 cut(s) 351, 432, 591
Hsp92II CATG 2 cut(s) 257, 515
HspAI GCGC 2 cut(s) 459, 470
Kpn2I TCCGGA 1 cut(s) 442
Kzo9I GATC 6 cut(s) 186, 281, 380, 414, 439, 445
Lsp1109I GCAGC 1 cut(s) 620
LweI GCATC 1 cut(s) 350
MaeI CTAG 3 cut(s) 176, 279, 462
MaeII ACGT 3 cut(s) 351, 432, 591
MaeIII GTNAC 1 cut(s) 407
MalI GATC 6 cut(s) 188, 283, 382, 416, 441, 447
MboI GATC 6 cut(s) 186, 281, 380, 414, 439, 445
MboII GAAGA 4 cut(s) 78, 120, 213, 596
MfeI CAATTG 1 cut(s) 210
MflI RGATCY 5 cut(s) 186, 281, 414, 439, 445
MlsI TGGCCA 1 cut(s) 557
MluCI AATT 4 cut(s) 210, 235, 328, 573
MluNI TGGCCA 1 cut(s) 557
MlyI GAGTC 3 cut(s) 4, 115, 506
MmeI TCCRAC 2 cut(s) 254, 465
MnlI CCTC 4 cut(s) 131, 134, 239, 299
Mox20I TGGCCA 1 cut(s) 557
MroI TCCGGA 1 cut(s) 442
MscI TGGCCA 1 cut(s) 557
MseI TTAA 1 cut(s) 679
Msp20I TGGCCA 1 cut(s) 557
MspI CCGG 4 cut(s) 34, 184, 412, 443
MunI CAATTG 1 cut(s) 210
Mva1269I GAATGC 1 cut(s) 541
MvnI CGCG 2 cut(s) 385, 470
MwoI GCNNNNNNNGC 2 cut(s) 369, 467
NdeII GATC 6 cut(s) 186, 281, 380, 414, 439, 445
NlaIII CATG 2 cut(s) 257, 515
NlaIV GGNNCC 1 cut(s) 441
NmuCI GTSAC 1 cut(s) 407
NruI TCGCGA 1 cut(s) 385
NspI RCATGY 1 cut(s) 257
PaeI GCATGC 1 cut(s) 257
PctI GAATGC 1 cut(s) 541
PfeI GAWTC 2 cut(s) 204, 274
PkrI GCNGC 6 cut(s) 56, 59, 326, 458, 632, 635
PleI GAGTC 3 cut(s) 4, 115, 505
PpsI GAGTC 3 cut(s) 4, 115, 505
PspN4I GGNNCC 1 cut(s) 441
PsuI RGATCY 5 cut(s) 186, 281, 414, 439, 445
RruI TCGCGA 1 cut(s) 385
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
SaqAI TTAA 1 cut(s) 679
SatI GCNGC 6 cut(s) 55, 58, 325, 457, 631, 634
Sau3AI GATC 6 cut(s) 186, 281, 380, 414, 439, 445
SchI GAGTC 3 cut(s) 4, 115, 506
SetI ASST 5 cut(s) 354, 400, 435, 531, 594
SfaNI GCATC 1 cut(s) 350
SphI GCATGC 1 cut(s) 257
Sse9I AATT 4 cut(s) 210, 235, 328, 573
SsiI CCGC 9 cut(s) 54, 57, 291, 324, 456, 521, 539, 630, 636
SspMI CTAG 3 cut(s) 176, 279, 462
TaiI ACGT 3 cut(s) 354, 435, 594
TaqI TCGA 4 cut(s) 8, 89, 504, 624
TasI AATT 4 cut(s) 210, 235, 328, 573
TatI WGTACW 1 cut(s) 239
TauI GCSGC 5 cut(s) 57, 60, 327, 459, 633
TfiI GAWTC 2 cut(s) 204, 274
Tru1I TTAA 1 cut(s) 679
Tru9I TTAA 1 cut(s) 679
TscAI CASTG 2 cut(s) 223, 565
TseFI GTSAC 1 cut(s) 407
TseI GCWGC 1 cut(s) 633
Tsp45I GTSAC 1 cut(s) 407
TspDTI ATGAA 1 cut(s) 633
TspGWI ACGGA 2 cut(s) 121, 490
TspRI CASTG 2 cut(s) 223, 565
XceI RCATGY 1 cut(s) 257
XspI CTAG 3 cut(s) 176, 279, 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.