Rh5BG445500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000442
Physical Location & Seq
Reverse (-)
71469957 .. 71470975
1019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG445500.1

Sequence Viewer

Length: 354 bp
ATGGGCAGTGATGTCAATCCGACGAACTGTGCTGGAGGTTGGCATGCGCAGAACGCTGGGCTGATTCCCATATCTGTTGGCAGTGATGATTGCGGCGACTTCTGTGTCAATGGTGGCAATTTGGTTTGGGTTAACGACGGCGTGGTGCGATGCCCAGATGGCTTTACTAGATTGCGATTGGATTTCAGTCGGGGATGTGACCGGATCTGGTTTTGTGGAGATGCAGAGAATCCTGATCTTAGTGGCGGTGTTGGGGTAGCGATTTTTGGATGGACGGAGATAACAGCTAGGGATTGCGTCGAGGAAGGCATCGTTTTTCCTGCAGATACGGTGATGGCTTGTCCTGCTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.26

Weight (kDa)

4.06

Isoelectric Point (pI)

24.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 104
Acc16I TGCGCA 1 cut(s) 48
AciI CCGC 2 cut(s) 93, 246
AclWI GGATC 1 cut(s) 212
AluBI AGCT 1 cut(s) 287
AluI AGCT 1 cut(s) 287
AlwI GGATC 1 cut(s) 212
AspLEI GCGC 1 cut(s) 49
AsuHPI GGTGA 1 cut(s) 343
BccI CCATC 3 cut(s) 152, 264, 328
BceAI ACGGC 1 cut(s) 154
BfaI CTAG 2 cut(s) 168, 288
BfmI CTRYAG 1 cut(s) 321
BglI GCCNNNNNGGC 1 cut(s) 159
BisI GCNGC 1 cut(s) 94
BlsI GCNGC 1 cut(s) 95
BmsI GCATC 3 cut(s) 140, 211, 318
BpmI CTGGAG 1 cut(s) 54
BsaBI GATNNNNATC 1 cut(s) 15
BsaWI WCCGGW 1 cut(s) 201
Bse8I GATNNNNATC 1 cut(s) 15
BseGI GGATG 2 cut(s) 200, 275
BseJI GATNNNNATC 1 cut(s) 15
BseYI CCCAGC 1 cut(s) 56
BsiSI CCGG 1 cut(s) 202
Bsp143I GATC 2 cut(s) 204, 235
BspACI CCGC 2 cut(s) 93, 246
BspMAI CTGCAG 1 cut(s) 325
BspPI GGATC 1 cut(s) 212
BssMI GATC 2 cut(s) 204, 235
Bst4CI ACNGT 2 cut(s) 29, 331
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 239
BstF5I GGATG 2 cut(s) 200, 275
BstHHI GCGC 1 cut(s) 49
BstKTI GATC 2 cut(s) 207, 238
BstMBI GATC 2 cut(s) 204, 235
BstMWI GCNNNNNNNGC 3 cut(s) 53, 159, 344
BstNSI RCATGY 1 cut(s) 47
BstSFI CTRYAG 1 cut(s) 321
BstX2I RGATCY 1 cut(s) 204
BstYI RGATCY 1 cut(s) 204
BtgZI GCGATG 1 cut(s) 163
BtsCI GGATG 2 cut(s) 200, 275
BtsI GCAGTG 2 cut(s) 13, 88
BtsIMutI CAGTG 2 cut(s) 13, 88
Cac8I GCNNGC 1 cut(s) 45
CfoI GCGC 1 cut(s) 49
CseI GACGC 1 cut(s) 286
CviAII CATG 1 cut(s) 44
CviJI RGCY 4 cut(s) 61, 162, 287, 338
CviKI_1 RGCY 4 cut(s) 61, 162, 287, 338
DdeI CTNAG 1 cut(s) 239
DpnI GATC 2 cut(s) 206, 237
DpnII GATC 2 cut(s) 204, 235
DrdI GACNNNNNNGTC 1 cut(s) 104
DseDI GACNNNNNNGTC 1 cut(s) 104
FaeI CATG 1 cut(s) 47
FaiI YATR 2 cut(s) 45, 71
FatI CATG 1 cut(s) 43
Fnu4HI GCNGC 1 cut(s) 94
FokI GGATG 2 cut(s) 207, 282
Fsp4HI GCNGC 1 cut(s) 94
FspBI CTAG 2 cut(s) 168, 288
FspI TGCGCA 1 cut(s) 48
GlaI GCGC 1 cut(s) 48
GluI GCNGC 1 cut(s) 94
GsaI CCCAGC 1 cut(s) 60
GsuI CTGGAG 1 cut(s) 54
HapII CCGG 1 cut(s) 202
HgaI GACGC 1 cut(s) 286
HhaI GCGC 1 cut(s) 49
Hin1II CATG 1 cut(s) 47
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 2 cut(s) 64, 229
HpaI GTTAAC 1 cut(s) 133
HpaII CCGG 1 cut(s) 202
HphI GGTGA 1 cut(s) 343
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 1 cut(s) 133
Hpy99I CGWCG 3 cut(s) 25, 140, 302
HpyAV CCTTC 1 cut(s) 299
HpyCH4III ACNGT 2 cut(s) 29, 331
HpyCH4V TGCA 2 cut(s) 224, 323
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 159, 344
HpyF3I CTNAG 1 cut(s) 239
Hsp92II CATG 1 cut(s) 47
HspAI GCGC 1 cut(s) 47
KspAI GTTAAC 1 cut(s) 133
Kzo9I GATC 2 cut(s) 204, 235
LpnPI CCDG 8 cut(s) 18, 42, 168, 193, 215, 246, 333, 333
LweI GCATC 3 cut(s) 140, 211, 318
MaeI CTAG 2 cut(s) 168, 288
MaeIII GTNAC 1 cut(s) 197
MalI GATC 2 cut(s) 206, 237
MboI GATC 2 cut(s) 204, 235
MflI RGATCY 1 cut(s) 204
MluCI AATT 1 cut(s) 118
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 2 cut(s) 29, 295
MseI TTAA 1 cut(s) 132
MspI CCGG 1 cut(s) 202
MwoI GCNNNNNNNGC 3 cut(s) 53, 159, 344
NdeII GATC 2 cut(s) 204, 235
NlaIII CATG 1 cut(s) 47
NmuCI GTSAC 1 cut(s) 197
NsbI TGCGCA 1 cut(s) 48
NspI RCATGY 1 cut(s) 47
PaeI GCATGC 1 cut(s) 47
PfeI GAWTC 2 cut(s) 64, 229
PkrI GCNGC 1 cut(s) 95
PspFI CCCAGC 1 cut(s) 56
PstI CTGCAG 1 cut(s) 325
PsuI RGATCY 1 cut(s) 204
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 1 cut(s) 94
Sau3AI GATC 2 cut(s) 204, 235
SetI ASST 2 cut(s) 40, 289
SfaNI GCATC 3 cut(s) 140, 211, 318
SfcI CTRYAG 1 cut(s) 321
SphI GCATGC 1 cut(s) 47
Sse9I AATT 1 cut(s) 118
SsiI CCGC 2 cut(s) 93, 246
SspMI CTAG 2 cut(s) 168, 288
TaaI ACNGT 2 cut(s) 29, 331
TaqI TCGA 1 cut(s) 300
TasI AATT 1 cut(s) 118
TauI GCSGC 1 cut(s) 96
TfiI GAWTC 2 cut(s) 64, 229
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 2 cut(s) 13, 88
TseFI GTSAC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 197
TspGWI ACGGA 1 cut(s) 290
TspRI CASTG 2 cut(s) 13, 88
XceI RCATGY 1 cut(s) 47
XspI CTAG 2 cut(s) 168, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.