RLG00000022071

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000442
Physical Location & Seq
Reverse (-)
80625744 .. 80629279
3536 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022071

Sequence Viewer

Length: 1359 bp
ATGGATTTTATACAAAATCCAACACAGTATGCAGCACAGGACTTGAGAAAGAACTTTGCAATGGATGTAATTGAAAACATCCATTCAAAAAGGGAGATGGGCATTGTTGGTGGATCCCTAGCTTTAAATCACATTAAAGTGATCGGTTATAGAGCTACACTTCCACAAGATGATTACAACTCCATGGAGCACAAGAATTATATTGAAGGCTGCAAAGATTTCTTTGACGATTTATTTGGAGGCAGTAGTGAACCATTGGACGACGAGAATTATATAGACATCAAGACATATGTGAAGGATCTGAAGACAATAGACCAAATGTTAGTGCTGCTTCGCCACCCTTATTTTCAATCAGTGGATGAAGCTCTGAGATTCATTCCATCCACCCTTAAAGAACTTCATGGCTTAAGGGGTAAAACGTTTCCACTTCCAAGAACTGGGGCTAATCAAGCAACCCCCGATCTAGTGCTAGTGCCTGACGAACGTCATGTCGATTGGAAACGTGCATACATGCATCTATGCCGCACAAAGAGAGAGAATATTTCAGAGTCAATTGGCAGAATTGAATCTGAAGATTACAGACGTGGATTTACGTCTCTATATAATGCCGGAAAGAATGGCACACCGTATGAAGATACCAATGAGATAGATGAGCTGAAGTTTTATGCAAACGCGTGTCAAAATCTAGTAAGATATATGAAGCGGCGGCGACAAATTAAAACTACTCGTCTGCTTCTCTCTTCGGGTTGCGACGGCGACAAATCTTTTCGTCCGACTCTATCTTCTGTTAGAGGAGGCGTATTTGCTGTATTTGATGGTGGTTGGGTTCTAGTTCACCGGATCTGGTTTGATGGAAGATTCCCAATTGGCAGTGATGTCATTCCGACTAATTGTGCTGGAGGTTGGCATGCACAGAGCGGTGGACTGATTCCCAGATCTGTTGGCGGTGATGAATGCGGAGGCTTCTATGCTGACGACGGCTATTTGGTGAGGGCTACCGACGATGTGGTGCGATGCCCAAATGGCCTTGCTGGATCGCGATTGGTTTTAGGTAGGGGATGTGACCGGATTTGGTTTTGTGGAGATGTAAAGGATCCGGATCTTGGTGGCGGCGCTGGGGTCCCGATTTTGGGATGGTCGGGGATGGCAGAGTCCGCCCATTGTCATGGGTTGGCGGGGAAGCTTCTCTCTCCGCGATCAGGCTGGATGGCCAGTGTTGGGGTCCAAATTGGCAGGGAAGACAACGTTGACCCGTTTGAGTTGGGTGGTAATGAAGTTGGCGGCGGCTGCGGGGTGTTTCCCTCGACTGACGTTGGTGTCGGTGACGGCGCAGCTGATGGTTTGGATACACTGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

453

Amino Acids

49.69

Weight (kDa)

5.53

Isoelectric Point (pI)

46.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1316
AccB7I CCANNNNNTGG 1 cut(s) 437
AccBSI CCGCTC 1 cut(s) 918
AccII CGCG 3 cut(s) 674, 1039, 1195
AccIII TCCGGA 1 cut(s) 1096
AclI AACGTT 2 cut(s) 419, 1245
AclWI GGATC 8 cut(s) 108, 121, 306, 848, 1042, 1088, 1101, 1107
AcoI YGGCCR 1 cut(s) 1209
AcuI CTGAAG 3 cut(s) 323, 591, 677
AfiI CCNNNNNNNGG 6 cut(s) 437, 1103, 1129, 1130, 1199, 1218
AflII CTTAAG 1 cut(s) 406
AflIII ACRYGT 1 cut(s) 672
AgsI TTSAA 5 cut(s) 74, 87, 206, 350, 566
AjiI CACGTC 1 cut(s) 584
AluBI AGCT 6 cut(s) 122, 155, 365, 655, 1183, 1334
AluI AGCT 6 cut(s) 122, 155, 365, 655, 1183, 1334
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 1 cut(s) 600
AlwI GGATC 8 cut(s) 108, 121, 306, 848, 1042, 1088, 1101, 1107
Aor13HI TCCGGA 1 cut(s) 1096
AoxI GGCC 2 cut(s) 1024, 1209
ApeKI GCWGC 5 cut(s) 32, 210, 328, 1287, 1331
ArsI GACNNNNNNTTYG 4 cut(s) 218, 250, 474, 506
AspLEI GCGC 2 cut(s) 1115, 1331
AspS9I GGNCC 2 cut(s) 1120, 1222
AsuHPI GGTGA 4 cut(s) 827, 959, 1000, 1334
AvaII GGWCC 2 cut(s) 1120, 1222
BaeI ACNNNNGTAYC 1 cut(s) 1338
BalI TGGCCA 1 cut(s) 1211
BamHI GGATCC 2 cut(s) 113, 1093
BbsI GAAGAC 2 cut(s) 311, 1245
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 5 cut(s) 44, 197, 315, 1274, 1343
BccI CCATC 8 cut(s) 91, 388, 809, 845, 1128, 1138, 1201, 1331
BceAI ACGGC 3 cut(s) 769, 994, 1342
BciVI GTATCC 1 cut(s) 1339
BcoDI GTCTC 1 cut(s) 600
BfaI CTAG 6 cut(s) 119, 464, 470, 686, 830, 1357
BfoI RGCGCY 1 cut(s) 1116
BfrI CTTAAG 1 cut(s) 406
BfuI GTATCC 1 cut(s) 1339
BglI GCCNNNNNGGC 1 cut(s) 1023
BglII AGATCT 1 cut(s) 935
Bme18I GGWCC 2 cut(s) 1120, 1222
BmgBI CACGTC 1 cut(s) 584
BmgT120I GGNCC 2 cut(s) 1120, 1222
BmiI GGNNCC 5 cut(s) 115, 1095, 1121, 1122, 1223
BmrI ACTGGG 1 cut(s) 447
BmsI GCATC 2 cut(s) 523, 1004
BmuI ACTGGG 1 cut(s) 447
BoxI GACNNNNGTC 1 cut(s) 483
BpiI GAAGAC 2 cut(s) 311, 1245
BpmI CTGGAG 1 cut(s) 918
BpuEI CTTGAG 1 cut(s) 64
BsaBI GATNNNNATC 1 cut(s) 1098
BsaJI CCNNGG 1 cut(s) 183
BsaWI WCCGGW 3 cut(s) 837, 1065, 1096
Bsc4I CCNNNNNNNGG 6 cut(s) 437, 1103, 1129, 1130, 1199, 1218
Bse1I ACTGG 3 cut(s) 442, 1212, 1356
Bse3DI GCAATG 1 cut(s) 66
Bse8I GATNNNNATC 1 cut(s) 1098
BseAI TCCGGA 1 cut(s) 1096
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 8 cut(s) 70, 78, 364, 380, 1064, 1139, 1149, 1212
BseJI GATNNNNATC 1 cut(s) 1098
BseLI CCNNNNNNNGG 6 cut(s) 437, 1103, 1129, 1130, 1199, 1218
BseMI GCAATG 1 cut(s) 66
BseMII CTCAG 1 cut(s) 359
BseNI ACTGG 3 cut(s) 442, 1212, 1356
BseRI GAGGAG 1 cut(s) 807
BseXI GCAGC 5 cut(s) 44, 197, 315, 1274, 1343
BseYI CCCAGC 1 cut(s) 1115
Bsh1236I CGCG 3 cut(s) 674, 1039, 1195
BshFI GGCC 2 cut(s) 1026, 1211
BsiHKAI GWGCWC 1 cut(s) 192
BsiSI CCGG 4 cut(s) 609, 838, 1066, 1097
BslFI GGGAC 1 cut(s) 1106
BslI CCNNNNNNNGG 6 cut(s) 437, 1103, 1129, 1130, 1199, 1218
BsmAI GTCTC 1 cut(s) 600
BsmBI CGTCTC 1 cut(s) 600
BsmFI GGGAC 1 cut(s) 1106
BsmI GAATGC 1 cut(s) 959
BsnI GGCC 2 cut(s) 1026, 1211
Bsp1286I GDGCHC 1 cut(s) 192
Bsp13I TCCGGA 1 cut(s) 1096
Bsp19I CCATGG 1 cut(s) 183
Bsp68I TCGCGA 1 cut(s) 1039
BspANI GGCC 2 cut(s) 1026, 1211
BspCNI CTCAG 1 cut(s) 360
BspEI TCCGGA 1 cut(s) 1096
BspFNI CGCG 3 cut(s) 674, 1039, 1195
BspLI GGNNCC 5 cut(s) 115, 1095, 1121, 1122, 1223
BspPI GGATC 8 cut(s) 108, 121, 306, 848, 1042, 1088, 1101, 1107
BspTI CTTAAG 1 cut(s) 406
BsrBI CCGCTC 1 cut(s) 918
BsrDI GCAATG 1 cut(s) 66
BsrI ACTGG 3 cut(s) 442, 1212, 1356
BssECI CCNNGG 1 cut(s) 183
BssT1I CCWWGG 1 cut(s) 183
Bst4CI ACNGT 2 cut(s) 27, 627
Bst6I CTCTTC 1 cut(s) 745
BstAFI CTTAAG 1 cut(s) 406
BstC8I GCNNGC 1 cut(s) 909
BstDEI CTNAG 1 cut(s) 368
BstDSI CCRYGG 1 cut(s) 183
BstF5I GGATG 8 cut(s) 70, 78, 364, 380, 1064, 1139, 1149, 1212
BstFNI CGCG 3 cut(s) 674, 1039, 1195
BstH2I RGCGCY 1 cut(s) 1116
BstHHI GCGC 2 cut(s) 1115, 1331
BstMAI GTCTC 1 cut(s) 600
BstMWI GCNNNNNNNGC 4 cut(s) 449, 1023, 1154, 1287
BstNSI RCATGY 2 cut(s) 514, 911
BstPAI GACNNNNGTC 1 cut(s) 483
BstUI CGCG 3 cut(s) 674, 1039, 1195
BstV1I GCAGC 5 cut(s) 44, 197, 315, 1274, 1343
BstV2I GAAGAC 2 cut(s) 311, 1245
BstX2I RGATCY 6 cut(s) 113, 298, 840, 935, 1093, 1099
BstXI CCANNNNNNTGG 1 cut(s) 1166
BstYI RGATCY 6 cut(s) 113, 298, 840, 935, 1093, 1099
BsuI GTATCC 1 cut(s) 1339
BsuRI GGCC 2 cut(s) 1026, 1211
BtgI CCRYGG 1 cut(s) 183
BtgZI GCGATG 1 cut(s) 1027
BtrI CACGTC 1 cut(s) 584
BtsCI GGATG 8 cut(s) 70, 78, 364, 380, 1064, 1139, 1149, 1212
BtsI GCAGTG 1 cut(s) 877
BtsIMutI CAGTG 4 cut(s) 360, 877, 1219, 1349
BtuMI TCGCGA 1 cut(s) 1039
Cac8I GCNNGC 1 cut(s) 909
CfoI GCGC 2 cut(s) 1115, 1331
Cfr13I GGNCC 2 cut(s) 1120, 1222
CviAII CATG 6 cut(s) 184, 401, 488, 511, 908, 1166
DdeI CTNAG 1 cut(s) 368
DraI TTTAAA 1 cut(s) 126
DrdI GACNNNNNNGTC 1 cut(s) 1316
DseDI GACNNNNNNGTC 1 cut(s) 1316
EaeI YGGCCR 1 cut(s) 1209
Eam1104I CTCTTC 1 cut(s) 745
EarI CTCTTC 1 cut(s) 745
EciI GGCGGA 1 cut(s) 1144
Eco130I CCWWGG 1 cut(s) 183
Eco47I GGWCC 2 cut(s) 1120, 1222
Eco57I CTGAAG 3 cut(s) 323, 591, 677
EcoO109I RGGNCCY 1 cut(s) 1120
EcoT14I CCWWGG 1 cut(s) 183
EcoT22I ATGCAT 1 cut(s) 516
ErhI CCWWGG 1 cut(s) 183
Esp3I CGTCTC 1 cut(s) 600
FaeI CATG 6 cut(s) 187, 404, 491, 514, 911, 1169
FaqI GGGAC 1 cut(s) 1106
FatI CATG 6 cut(s) 183, 400, 487, 510, 907, 1165
FauI CCCGC 2 cut(s) 1168, 1283
FauNDI CATATG 1 cut(s) 289
FokI GGATG 8 cut(s) 65, 77, 367, 371, 1071, 1146, 1156, 1219
FspBI CTAG 6 cut(s) 119, 464, 470, 686, 830, 1357
GlaI GCGC 2 cut(s) 1114, 1330
GsaI CCCAGC 1 cut(s) 1119
GsuI CTGGAG 1 cut(s) 918
HaeII RGCGCY 1 cut(s) 1116
HaeIII GGCC 2 cut(s) 1026, 1211
HapII CCGG 4 cut(s) 609, 838, 1066, 1097
HhaI GCGC 2 cut(s) 1115, 1331
Hin1II CATG 6 cut(s) 187, 404, 491, 514, 911, 1169
Hin6I GCGC 2 cut(s) 1113, 1329
HinP1I GCGC 2 cut(s) 1113, 1329
HincII GTYRAC 1 cut(s) 1249
HindII GTYRAC 1 cut(s) 1249
HindIII AAGCTT 1 cut(s) 1181
HinfI GANTC 7 cut(s) 372, 548, 566, 775, 858, 928, 1151
HpaII CCGG 4 cut(s) 609, 838, 1066, 1097
HphI GGTGA 4 cut(s) 827, 959, 1000, 1334
Hpy166II GTNNAC 4 cut(s) 251, 835, 923, 1249
Hpy188I TCNGA 6 cut(s) 303, 369, 547, 571, 774, 885
Hpy188III TCNNGA 4 cut(s) 283, 1038, 1097, 1123
Hpy8I GTNNAC 4 cut(s) 251, 835, 923, 1249
Hpy99I CGWCG 4 cut(s) 266, 755, 980, 1004
HpyAV CCTTC 2 cut(s) 200, 289
HpyCH4III ACNGT 2 cut(s) 27, 627
HpyCH4IV ACGT 7 cut(s) 419, 484, 502, 583, 593, 1245, 1311
HpyCH4V TGCA 7 cut(s) 32, 59, 213, 506, 514, 668, 911
HpyF10VI GCNNNNNNNGC 4 cut(s) 449, 1023, 1154, 1287
HpyF3I CTNAG 1 cut(s) 368
HpySE526I ACGT 7 cut(s) 419, 484, 502, 583, 593, 1245, 1311
Hsp92II CATG 6 cut(s) 187, 404, 491, 514, 911, 1169
HspAI GCGC 2 cut(s) 1113, 1329
KflI GGGWCCC 1 cut(s) 1120
Kpn2I TCCGGA 1 cut(s) 1096
LmnI GCTCC 1 cut(s) 187
Lsp1109I GCAGC 5 cut(s) 44, 197, 315, 1274, 1343
LweI GCATC 2 cut(s) 523, 1004
MaeI CTAG 6 cut(s) 119, 464, 470, 686, 830, 1357
MaeII ACGT 7 cut(s) 419, 484, 502, 583, 593, 1245, 1311
MaeIII GTNAC 2 cut(s) 1061, 1322
MbiI CCGCTC 1 cut(s) 918
MboII GAAGA 7 cut(s) 316, 584, 644, 732, 774, 867, 1250
MfeI CAATTG 2 cut(s) 552, 864
MflI RGATCY 6 cut(s) 113, 298, 840, 935, 1093, 1099
MhlI GDGCHC 1 cut(s) 192
MlsI TGGCCA 1 cut(s) 1211
MluCI AATT 9 cut(s) 69, 196, 268, 552, 561, 714, 864, 889, 1227
MluI ACGCGT 1 cut(s) 672
MluNI TGGCCA 1 cut(s) 1211
MlyI GAGTC 3 cut(s) 557, 769, 1160
MmeI TCCRAC 3 cut(s) 44, 797, 908
MnlI CCTC 7 cut(s) 233, 785, 788, 893, 953, 984, 1312
Mox20I TGGCCA 1 cut(s) 1211
Mph1103I ATGCAT 1 cut(s) 516
MroI TCCGGA 1 cut(s) 1096
MscI TGGCCA 1 cut(s) 1211
MseI TTAA 5 cut(s) 125, 135, 390, 407, 717
MslI CAYNNNNRTG 2 cut(s) 137, 1164
Msp20I TGGCCA 1 cut(s) 1211
MspA1I CMGCKG 1 cut(s) 1334
MspCI CTTAAG 1 cut(s) 406
MspI CCGG 4 cut(s) 609, 838, 1066, 1097
MunI CAATTG 2 cut(s) 552, 864
Mva1269I GAATGC 1 cut(s) 959
MvnI CGCG 3 cut(s) 674, 1039, 1195
MwoI GCNNNNNNNGC 4 cut(s) 449, 1023, 1154, 1287
NcoI CCATGG 1 cut(s) 183
NdeI CATATG 1 cut(s) 289
NlaIII CATG 6 cut(s) 187, 404, 491, 514, 911, 1169
NlaIV GGNNCC 5 cut(s) 115, 1095, 1121, 1122, 1223
NmuCI GTSAC 2 cut(s) 1061, 1322
NruI TCGCGA 1 cut(s) 1039
NsiI ATGCAT 1 cut(s) 516
NspI RCATGY 2 cut(s) 514, 911
PaeI GCATGC 1 cut(s) 911
PctI GAATGC 1 cut(s) 959
PfeI GAWTC 4 cut(s) 372, 566, 858, 928
PflMI CCANNNNNTGG 1 cut(s) 437
PleI GAGTC 3 cut(s) 556, 769, 1159
PpsI GAGTC 3 cut(s) 556, 769, 1159
PpuMI RGGWCCY 1 cut(s) 1120
PshAI GACNNNNGTC 1 cut(s) 483
Psp1406I AACGTT 2 cut(s) 419, 1245
Psp5II RGGWCCY 1 cut(s) 1120
PspFI CCCAGC 1 cut(s) 1115
PspN4I GGNNCC 5 cut(s) 115, 1095, 1121, 1122, 1223
PspPI GGNCC 2 cut(s) 1120, 1222
PspPPI RGGWCCY 1 cut(s) 1120
PsuI RGATCY 6 cut(s) 113, 298, 840, 935, 1093, 1099
PvuII CAGCTG 1 cut(s) 1334
RruI TCGCGA 1 cut(s) 1039
RseI CAYNNNNRTG 2 cut(s) 137, 1164
SaqAI TTAA 5 cut(s) 125, 135, 390, 407, 717
Sau96I GGNCC 2 cut(s) 1120, 1222
SchI GAGTC 3 cut(s) 557, 769, 1160
SduI GDGCHC 1 cut(s) 192
SfaNI GCATC 2 cut(s) 523, 1004
SinI GGWCC 2 cut(s) 1120, 1222
SmiMI CAYNNNNRTG 2 cut(s) 137, 1164
SmlI CTYRAG 2 cut(s) 43, 406
SmoI CTYRAG 2 cut(s) 43, 406
SphI GCATGC 1 cut(s) 911
Sse9I AATT 9 cut(s) 69, 196, 268, 552, 561, 714, 864, 889, 1227
SspI AATATT 1 cut(s) 541
SspMI CTAG 6 cut(s) 119, 464, 470, 686, 830, 1357
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 2 cut(s) 27, 627
TaiI ACGT 7 cut(s) 422, 487, 505, 586, 596, 1248, 1314
TaqI TCGA 2 cut(s) 492, 1304
TasI AATT 9 cut(s) 69, 196, 268, 552, 561, 714, 864, 889, 1227
TauI GCSGC 6 cut(s) 525, 706, 709, 1113, 1284, 1287
TfiI GAWTC 4 cut(s) 372, 566, 858, 928
Tru1I TTAA 5 cut(s) 125, 135, 390, 407, 717
Tru9I TTAA 5 cut(s) 125, 135, 390, 407, 717
TscAI CASTG 4 cut(s) 360, 877, 1219, 1356
TseFI GTSAC 2 cut(s) 1061, 1322
TseI GCWGC 5 cut(s) 32, 210, 328, 1287, 1331
Tsp45I GTSAC 2 cut(s) 1061, 1322
TspDTI ATGAA 7 cut(s) 364, 375, 389, 645, 713, 966, 1287
TspRI CASTG 4 cut(s) 360, 877, 1219, 1356
Van91I CCANNNNNTGG 1 cut(s) 437
Vha464I CTTAAG 1 cut(s) 406
VpaK11BI GGWCC 2 cut(s) 1120, 1222
XceI RCATGY 2 cut(s) 514, 911
XspI CTAG 6 cut(s) 119, 464, 470, 686, 830, 1357
Zsp2I ATGCAT 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.