Rh5AG430100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000442
Physical Location & Seq
Reverse (-)
73959136 .. 73961752
2617 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG430100.1

Sequence Viewer

Length: 183 bp
ATGGGCAATGATGTCGATCCGACGAACTATGCTAGAGAGAATCCTGATCTTGGTGGCGGTGTTGGGGTCGCGATTTTGGGATGGACGGAGAAGACAGCTAGGGATTGGGTCGAGGAAGGCTTCGTTTTTCCTGCAGATACGCCAATGTCTGTTGGAAAGTTCAAGGGTTGGGTTCATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

60

Amino Acids

6.55

Weight (kDa)

4.56

Isoelectric Point (pI)

20.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 71
AciI CCGC 1 cut(s) 57
AclWI GGATC 1 cut(s) 11
AfiI CCNNNNNNNGG 1 cut(s) 50
AgsI TTSAA 1 cut(s) 163
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
AlwI GGATC 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 98
BccI CCATC 1 cut(s) 75
BcgI CGANNNNNNTGC 1 cut(s) 29
BfaI CTAG 2 cut(s) 33, 99
BfmI CTRYAG 1 cut(s) 132
BpiI GAAGAC 1 cut(s) 98
BsaBI GATNNNNATC 1 cut(s) 15
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse3DI GCAATG 1 cut(s) 13
Bse8I GATNNNNATC 1 cut(s) 15
BseGI GGATG 1 cut(s) 86
BseJI GATNNNNATC 1 cut(s) 15
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMI GCAATG 1 cut(s) 13
Bsh1236I CGCG 1 cut(s) 71
BslI CCNNNNNNNGG 1 cut(s) 50
Bsp143I GATC 2 cut(s) 16, 46
Bsp68I TCGCGA 1 cut(s) 71
BspACI CCGC 1 cut(s) 57
BspFNI CGCG 1 cut(s) 71
BspMAI CTGCAG 1 cut(s) 136
BspPI GGATC 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 13
BssMI GATC 2 cut(s) 16, 46
BstF5I GGATG 1 cut(s) 86
BstFNI CGCG 1 cut(s) 71
BstKTI GATC 2 cut(s) 19, 49
BstMBI GATC 2 cut(s) 16, 46
BstSFI CTRYAG 1 cut(s) 132
BstUI CGCG 1 cut(s) 71
BstV2I GAAGAC 1 cut(s) 98
BtsCI GGATG 1 cut(s) 86
BtuMI TCGCGA 1 cut(s) 71
CviJI RGCY 2 cut(s) 98, 120
CviKI_1 RGCY 2 cut(s) 98, 120
DpnI GATC 2 cut(s) 18, 48
DpnII GATC 2 cut(s) 16, 46
FaiI YATR 1 cut(s) 30
FokI GGATG 1 cut(s) 93
FspBI CTAG 2 cut(s) 33, 99
HinfI GANTC 1 cut(s) 40
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 2 cut(s) 44, 70
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 110
HpyCH4V TGCA 1 cut(s) 134
Kzo9I GATC 2 cut(s) 16, 46
LpnPI CCDG 2 cut(s) 57, 144
MaeI CTAG 2 cut(s) 33, 99
MalI GATC 2 cut(s) 18, 48
MboI GATC 2 cut(s) 16, 46
MboII GAAGA 1 cut(s) 103
MmeI TCCRAC 2 cut(s) 44, 133
MnlI CCTC 1 cut(s) 106
MvnI CGCG 1 cut(s) 71
NdeII GATC 2 cut(s) 16, 46
NruI TCGCGA 1 cut(s) 71
PfeI GAWTC 1 cut(s) 40
PstI CTGCAG 1 cut(s) 136
RruI TCGCGA 1 cut(s) 71
Sau3AI GATC 2 cut(s) 16, 46
SetI ASST 1 cut(s) 100
SfcI CTRYAG 1 cut(s) 132
SgeI CNNG 8 cut(s) 45, 56, 62, 82, 111, 124, 143, 175
SsiI CCGC 1 cut(s) 57
SspMI CTAG 2 cut(s) 33, 99
TaqI TCGA 2 cut(s) 15, 111
TfiI GAWTC 1 cut(s) 40
TspDTI ATGAA 1 cut(s) 164
TspGWI ACGGA 1 cut(s) 101
XspI CTAG 2 cut(s) 33, 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.