Rh2CG612300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000442
Physical Location & Seq
Forward (+)
78982379 .. 78982801
423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG612300.1

Sequence Viewer

Length: 423 bp
ATGGGATTTCTAGTTGGCATTTTGAGGAAATTGGGCAGCAGCTCCATTGTCAGTAACATGGGGCCAAAGTTGAATTTGGGCACAAAGATGCATTGCTCATTTGGGACTCTGACAATGGAAGATATTAAGCAAGATGGCACATTGGAGCAAAAAAGAGCTTGCTTGAAAGAGCTACTTCATGAAATGGTATGGAGAATGAGGAGGGGCATTCAAGGAGGATGCACAGACCTAGAACAGATTCCTGTAATTTATGACGGAGCTTACTTGCCAGACGAGACATATGTAGTAGGGAAATACCCTAGCTACTTATTTTCAGTAAAAGATCTGGCAGTTCATCTTCATGAGAATGATCAAATGAGTTCAAGGGACAGCATGAAGTTTGAAGATTTCAAGATTTACACGAGCTTATTGAGCAACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.89

Weight (kDa)

6.41

Isoelectric Point (pI)

45.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 73
AflIII ACRYGT 1 cut(s) 417
AgsI TTSAA 6 cut(s) 73, 166, 212, 363, 383, 391
AluBI AGCT 6 cut(s) 42, 158, 172, 260, 303, 405
AluI AGCT 6 cut(s) 42, 158, 172, 260, 303, 405
Alw26I GTCTC 1 cut(s) 269
AoxI GGCC 1 cut(s) 62
ApeKI GCWGC 2 cut(s) 36, 39
ApoI RAATTY 1 cut(s) 73
Asp700I GAANNNNTTC 1 cut(s) 237
AspS9I GGNCC 1 cut(s) 62
BaeGI GKGCMC 1 cut(s) 83
BauI CACGAG 1 cut(s) 400
BbvI GCAGC 2 cut(s) 48, 51
BccI CCATC 1 cut(s) 128
BclI TGATCA 1 cut(s) 349
BcoDI GTCTC 1 cut(s) 269
BfaI CTAG 3 cut(s) 11, 230, 300
BglII AGATCT 1 cut(s) 322
BisI GCNGC 2 cut(s) 37, 40
BlsI GCNGC 2 cut(s) 38, 41
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 63
BmsI GCATC 2 cut(s) 78, 209
Bse3DI GCAATG 1 cut(s) 91
BseGI GGATG 1 cut(s) 224
BseMI GCAATG 1 cut(s) 91
BseRI GAGGAG 1 cut(s) 214
BseSI GKGCMC 1 cut(s) 83
BseXI GCAGC 2 cut(s) 48, 51
BshFI GGCC 1 cut(s) 64
BslFI GGGAC 2 cut(s) 118, 380
BsmAI GTCTC 1 cut(s) 269
BsmFI GGGAC 2 cut(s) 118, 380
BsmI GAATGC 1 cut(s) 207
BsnI GGCC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 83
Bsp143I GATC 2 cut(s) 322, 349
BspANI GGCC 1 cut(s) 64
BspHI TCATGA 2 cut(s) 178, 340
BspLI GGNNCC 1 cut(s) 63
BsrDI GCAATG 1 cut(s) 91
BssMI GATC 2 cut(s) 322, 349
BssSI CACGAG 1 cut(s) 400
Bst2BI CACGAG 1 cut(s) 400
BstC8I GCNNGC 1 cut(s) 160
BstF5I GGATG 1 cut(s) 224
BstKTI GATC 2 cut(s) 325, 352
BstMAI GTCTC 1 cut(s) 269
BstMBI GATC 2 cut(s) 322, 349
BstMWI GCNNNNNNNGC 1 cut(s) 411
BstNSI RCATGY 1 cut(s) 421
BstSLI GKGCMC 1 cut(s) 83
BstV1I GCAGC 2 cut(s) 48, 51
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BsuRI GGCC 1 cut(s) 64
BtsCI GGATG 1 cut(s) 224
Cac8I GCNNGC 1 cut(s) 160
CciI TCATGA 2 cut(s) 178, 340
Cfr13I GGNCC 1 cut(s) 62
CviAII CATG 5 cut(s) 58, 179, 341, 373, 418
CviJI RGCY 7 cut(s) 42, 64, 158, 172, 260, 303, 405
CviKI_1 RGCY 7 cut(s) 42, 64, 158, 172, 260, 303, 405
DpnI GATC 2 cut(s) 324, 351
DpnII GATC 2 cut(s) 322, 349
EcoT22I ATGCAT 1 cut(s) 93
FaeI CATG 5 cut(s) 61, 182, 344, 376, 421
FaiI YATR 9 cut(s) 59, 180, 190, 252, 280, 282, 342, 374, 419
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FaqI GGGAC 2 cut(s) 118, 380
FatI CATG 5 cut(s) 57, 178, 340, 372, 417
FauNDI CATATG 1 cut(s) 280
FbaI TGATCA 1 cut(s) 349
Fnu4HI GCNGC 2 cut(s) 37, 40
FokI GGATG 1 cut(s) 231
Fsp4HI GCNGC 2 cut(s) 37, 40
FspBI CTAG 3 cut(s) 11, 230, 300
GluI GCNGC 2 cut(s) 37, 40
HaeIII GGCC 1 cut(s) 64
Hin1II CATG 5 cut(s) 61, 182, 344, 376, 421
HinfI GANTC 2 cut(s) 106, 238
Hpy188I TCNGA 1 cut(s) 111
Hpy188III TCNNGA 3 cut(s) 179, 341, 391
HpyCH4V TGCA 2 cut(s) 91, 222
HpyF10VI GCNNNNNNNGC 1 cut(s) 411
Hsp92II CATG 5 cut(s) 61, 182, 344, 376, 421
Ksp22I TGATCA 1 cut(s) 349
Kzo9I GATC 2 cut(s) 322, 349
LmnI GCTCC 3 cut(s) 47, 145, 257
LpnPI CCDG 3 cut(s) 255, 282, 311
Lsp1109I GCAGC 2 cut(s) 48, 51
LweI GCATC 2 cut(s) 78, 209
MaeI CTAG 3 cut(s) 11, 230, 300
MaeIII GTNAC 1 cut(s) 53
MalI GATC 2 cut(s) 324, 351
MboI GATC 2 cut(s) 322, 349
MboII GAAGA 3 cut(s) 131, 329, 395
MflI RGATCY 1 cut(s) 322
MhlI GDGCHC 1 cut(s) 83
MluCI AATT 3 cut(s) 29, 73, 246
MlyI GAGTC 1 cut(s) 100
MnlI CCTC 4 cut(s) 18, 192, 195, 209
Mph1103I ATGCAT 1 cut(s) 93
MroXI GAANNNNTTC 1 cut(s) 237
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 3 cut(s) 86, 339, 345
Mva1269I GAATGC 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 411
NdeI CATATG 1 cut(s) 280
NdeII GATC 2 cut(s) 322, 349
NlaIII CATG 5 cut(s) 61, 182, 344, 376, 421
NlaIV GGNNCC 1 cut(s) 63
NsiI ATGCAT 1 cut(s) 93
NspI RCATGY 1 cut(s) 421
PagI TCATGA 2 cut(s) 178, 340
PciI ACATGT 1 cut(s) 417
PctI GAATGC 1 cut(s) 207
PdmI GAANNNNTTC 1 cut(s) 237
PfeI GAWTC 1 cut(s) 238
PkrI GCNGC 2 cut(s) 38, 41
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PscI ACATGT 1 cut(s) 417
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 1 cut(s) 62
PsuI RGATCY 1 cut(s) 322
RseI CAYNNNNRTG 3 cut(s) 86, 339, 345
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 2 cut(s) 37, 40
Sau3AI GATC 2 cut(s) 322, 349
Sau96I GGNCC 1 cut(s) 62
SchI GAGTC 1 cut(s) 100
SduI GDGCHC 1 cut(s) 83
SetI ASST 7 cut(s) 44, 160, 174, 231, 262, 305, 407
SfaNI GCATC 2 cut(s) 78, 209
SmiMI CAYNNNNRTG 3 cut(s) 86, 339, 345
Sse9I AATT 3 cut(s) 29, 73, 246
SspMI CTAG 3 cut(s) 11, 230, 300
TasI AATT 3 cut(s) 29, 73, 246
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseI GCWGC 2 cut(s) 36, 39
TspDTI ATGAA 5 cut(s) 167, 195, 323, 329, 389
TspGWI ACGGA 1 cut(s) 270
XapI RAATTY 1 cut(s) 73
XceI RCATGY 1 cut(s) 421
XmnI GAANNNNTTC 1 cut(s) 237
XspI CTAG 3 cut(s) 11, 230, 300
Zsp2I ATGCAT 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.