Rh7CG200400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000442
Physical Location & Seq
Reverse (-)
17810739 .. 17812931
2193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG200400.1

Sequence Viewer

Length: 510 bp
ATGAGCCTCTCTAATGCGGATGTCCAACAAACCACGTCTGTGACATTTCACCGGATCTGGTTTGGTGGAAGATTCCCAATTGGCAGTAATGTCGTTCCGACTAATTGTGCTGGAGGTTGGCATGCACAAAGCGGTGGACTGATTCCCAGATCTGTTGGCGGTGATGATTGCAGAGGCTTCTGTGCCGACGGTGGCAATTTGGTGTGGGCTACCGACGACGTGGTGCGATACCCAGATGGCCTTGCTAGATTGCGATTGGTTTTAGGTTGGGGATGTGACAGGATCTGGTTTTGTGGAGACGTAAAGGATCCGGATCTTGGTGGTGGCACTAGGGTTGCGATTTTGGGATGGTCGGAGATGGCAGAGTTCGTCGATTGTCATGGGTTGGCGGGGAAGCTTCTCTCTCCGCGTTCAGGCTGGATGGCCAATGTTGGTGTCCGAATTGGCAAGGAAGATGACGTTGACCCGTCTGAGTTGGGTAGTAATGAAGTCGGCGGCGGCTGCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

17.94

Weight (kDa)

5.06

Isoelectric Point (pI)

37.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 495
AccII CGCG 1 cut(s) 409
AccIII TCCGGA 1 cut(s) 310
AciI CCGC 7 cut(s) 17, 132, 159, 389, 407, 495, 498
AclWI GGATC 5 cut(s) 62, 290, 302, 315, 321
AcoI YGGCCR 1 cut(s) 423
AfiI CCNNNNNNNGG 2 cut(s) 317, 413
AjiI CACGTC 2 cut(s) 36, 220
AleI CACNNNNGTG 1 cut(s) 38
AluBI AGCT 1 cut(s) 397
AluI AGCT 1 cut(s) 397
Alw26I GTCTC 1 cut(s) 291
AlwI GGATC 5 cut(s) 62, 290, 302, 315, 321
AlwNI CAGNNNCTG 1 cut(s) 285
Aor13HI TCCGGA 1 cut(s) 310
AoxI GGCC 2 cut(s) 238, 423
ApeKI GCWGC 1 cut(s) 501
AsuHPI GGTGA 2 cut(s) 41, 173
BalI TGGCCA 1 cut(s) 425
BamHI GGATCC 1 cut(s) 307
BbvI GCAGC 1 cut(s) 488
BccI CCATC 4 cut(s) 230, 342, 352, 415
BcgI CGANNNNNNTGC 2 cut(s) 73, 107
BcoDI GTCTC 1 cut(s) 291
BfaI CTAG 2 cut(s) 246, 330
BfmI CTRYAG 1 cut(s) 502
BfuAI ACCTGC 1 cut(s) 495
BglII AGATCT 1 cut(s) 149
BisI GCNGC 3 cut(s) 496, 499, 502
BlsI GCNGC 3 cut(s) 497, 500, 503
BmgBI CACGTC 2 cut(s) 36, 220
BmiI GGNNCC 1 cut(s) 309
BpmI CTGGAG 1 cut(s) 132
BsaBI GATNNNNATC 1 cut(s) 312
BsaWI WCCGGW 2 cut(s) 51, 310
Bsc4I CCNNNNNNNGG 2 cut(s) 317, 413
Bse8I GATNNNNATC 1 cut(s) 312
BseAI TCCGGA 1 cut(s) 310
BseGI GGATG 4 cut(s) 25, 278, 353, 426
BseJI GATNNNNATC 1 cut(s) 312
BseLI CCNNNNNNNGG 2 cut(s) 317, 413
BseMII CTCAG 1 cut(s) 462
BseXI GCAGC 1 cut(s) 488
Bsh1236I CGCG 1 cut(s) 409
BshFI GGCC 2 cut(s) 240, 425
BsiSI CCGG 2 cut(s) 52, 311
BslI CCNNNNNNNGG 2 cut(s) 317, 413
BsmAI GTCTC 1 cut(s) 291
BsmBI CGTCTC 1 cut(s) 291
BsnI GGCC 2 cut(s) 240, 425
Bsp13I TCCGGA 1 cut(s) 310
Bsp143I GATC 5 cut(s) 54, 149, 282, 307, 313
BspACI CCGC 7 cut(s) 17, 132, 159, 389, 407, 495, 498
BspANI GGCC 2 cut(s) 240, 425
BspCNI CTCAG 1 cut(s) 463
BspEI TCCGGA 1 cut(s) 310
BspFNI CGCG 1 cut(s) 409
BspLI GGNNCC 1 cut(s) 309
BspMAI CTGCAG 1 cut(s) 506
BspMI ACCTGC 1 cut(s) 495
BspPI GGATC 5 cut(s) 62, 290, 302, 315, 321
BssMI GATC 5 cut(s) 54, 149, 282, 307, 313
Bst4CI ACNGT 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 1 cut(s) 471
BstF5I GGATG 4 cut(s) 25, 278, 353, 426
BstFNI CGCG 1 cut(s) 409
BstKTI GATC 5 cut(s) 57, 152, 285, 310, 316
BstMAI GTCTC 1 cut(s) 291
BstMBI GATC 5 cut(s) 54, 149, 282, 307, 313
BstMWI GCNNNNNNNGC 1 cut(s) 501
BstNSI RCATGY 1 cut(s) 125
BstSFI CTRYAG 1 cut(s) 502
BstUI CGCG 1 cut(s) 409
BstV1I GCAGC 1 cut(s) 488
BstX2I RGATCY 5 cut(s) 54, 149, 282, 307, 313
BstYI RGATCY 5 cut(s) 54, 149, 282, 307, 313
BsuRI GGCC 2 cut(s) 240, 425
BtrI CACGTC 2 cut(s) 36, 220
BtsCI GGATG 4 cut(s) 25, 278, 353, 426
BveI ACCTGC 1 cut(s) 495
Cac8I GCNNGC 1 cut(s) 123
CaiI CAGNNNCTG 1 cut(s) 285
CviAII CATG 2 cut(s) 122, 380
CviJI RGCY 8 cut(s) 6, 177, 209, 240, 397, 417, 425, 501
CviKI_1 RGCY 8 cut(s) 6, 177, 209, 240, 397, 417, 425, 501
DdeI CTNAG 1 cut(s) 471
DpnI GATC 5 cut(s) 56, 151, 284, 309, 315
DpnII GATC 5 cut(s) 54, 149, 282, 307, 313
EaeI YGGCCR 1 cut(s) 423
Esp3I CGTCTC 1 cut(s) 291
FaeI CATG 2 cut(s) 125, 383
FaiI YATR 2 cut(s) 123, 381
FatI CATG 2 cut(s) 121, 379
FauI CCCGC 1 cut(s) 382
Fnu4HI GCNGC 3 cut(s) 496, 499, 502
FokI GGATG 4 cut(s) 32, 285, 360, 433
Fsp4HI GCNGC 3 cut(s) 496, 499, 502
FspBI CTAG 2 cut(s) 246, 330
GluI GCNGC 3 cut(s) 496, 499, 502
GsuI CTGGAG 1 cut(s) 132
HaeIII GGCC 2 cut(s) 240, 425
HapII CCGG 2 cut(s) 52, 311
Hin1II CATG 2 cut(s) 125, 383
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 2 cut(s) 72, 142
HpaII CCGG 2 cut(s) 52, 311
HphI GGTGA 2 cut(s) 41, 173
Hpy166II GTNNAC 2 cut(s) 137, 463
Hpy188I TCNGA 4 cut(s) 99, 355, 440, 472
Hpy188III TCNNGA 1 cut(s) 311
Hpy8I GTNNAC 2 cut(s) 137, 463
Hpy99I CGWCG 4 cut(s) 191, 218, 221, 374
HpyCH4III ACNGT 1 cut(s) 191
HpyCH4IV ACGT 4 cut(s) 35, 219, 300, 459
HpyCH4V TGCA 3 cut(s) 125, 171, 504
HpyF10VI GCNNNNNNNGC 1 cut(s) 501
HpyF3I CTNAG 1 cut(s) 471
HpySE526I ACGT 4 cut(s) 35, 219, 300, 459
Hsp92II CATG 2 cut(s) 125, 383
Kpn2I TCCGGA 1 cut(s) 310
Kzo9I GATC 5 cut(s) 54, 149, 282, 307, 313
Lsp1109I GCAGC 1 cut(s) 488
MaeI CTAG 2 cut(s) 246, 330
MaeII ACGT 4 cut(s) 35, 219, 300, 459
MaeIII GTNAC 2 cut(s) 40, 275
MalI GATC 5 cut(s) 56, 151, 284, 309, 315
MboI GATC 5 cut(s) 54, 149, 282, 307, 313
MboII GAAGA 2 cut(s) 81, 464
MfeI CAATTG 1 cut(s) 78
MflI RGATCY 5 cut(s) 54, 149, 282, 307, 313
MlsI TGGCCA 1 cut(s) 425
MluCI AATT 4 cut(s) 78, 103, 196, 441
MluNI TGGCCA 1 cut(s) 425
MmeI TCCRAC 3 cut(s) 49, 122, 333
MnlI CCTC 3 cut(s) 17, 107, 167
Mox20I TGGCCA 1 cut(s) 425
MroI TCCGGA 1 cut(s) 310
MscI TGGCCA 1 cut(s) 425
MslI CAYNNNNRTG 1 cut(s) 38
Msp20I TGGCCA 1 cut(s) 425
MspI CCGG 2 cut(s) 52, 311
MunI CAATTG 1 cut(s) 78
MvnI CGCG 1 cut(s) 409
MwoI GCNNNNNNNGC 1 cut(s) 501
NdeII GATC 5 cut(s) 54, 149, 282, 307, 313
NlaIII CATG 2 cut(s) 125, 383
NlaIV GGNNCC 1 cut(s) 309
NmuCI GTSAC 2 cut(s) 40, 275
NspI RCATGY 1 cut(s) 125
OliI CACNNNNGTG 1 cut(s) 38
PaeI GCATGC 1 cut(s) 125
PfeI GAWTC 2 cut(s) 72, 142
PkrI GCNGC 3 cut(s) 497, 500, 503
PspN4I GGNNCC 1 cut(s) 309
PstI CTGCAG 1 cut(s) 506
PstNI CAGNNNCTG 1 cut(s) 285
PsuI RGATCY 5 cut(s) 54, 149, 282, 307, 313
RseI CAYNNNNRTG 1 cut(s) 38
SatI GCNGC 3 cut(s) 496, 499, 502
Sau3AI GATC 5 cut(s) 54, 149, 282, 307, 313
SetI ASST 8 cut(s) 38, 118, 222, 268, 303, 399, 462, 509
SfcI CTRYAG 1 cut(s) 502
SmiMI CAYNNNNRTG 1 cut(s) 38
SphI GCATGC 1 cut(s) 125
Sse9I AATT 4 cut(s) 78, 103, 196, 441
SsiI CCGC 7 cut(s) 17, 132, 159, 389, 407, 495, 498
SspMI CTAG 2 cut(s) 246, 330
TaaI ACNGT 1 cut(s) 191
TaiI ACGT 4 cut(s) 38, 222, 303, 462
TaqI TCGA 1 cut(s) 372
TasI AATT 4 cut(s) 78, 103, 196, 441
TauI GCSGC 2 cut(s) 498, 501
TfiI GAWTC 2 cut(s) 72, 142
TseFI GTSAC 2 cut(s) 40, 275
TseI GCWGC 1 cut(s) 501
Tsp45I GTSAC 2 cut(s) 40, 275
TspDTI ATGAA 1 cut(s) 501
XceI RCATGY 1 cut(s) 125
XspI CTAG 2 cut(s) 246, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.