Rorug02G0556300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000442
Physical Location & Seq
Forward (+)
68303652 .. 68304179
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0556300.1

Sequence Viewer

Length: 528 bp
ATGAGCAGTGATAAATTTGTACAAGTGATAGTGGTTGATGGTTGCTTCATTCTTGAATTCATGCGCAAAAGGGCAGACATCAGGTTTCCTTCAAATGATCCTGTCTTCCAAAATTCATGGATGCGGTCCTCCGTTGAAACTGACCTGTTTCTACTGGAAAACCAGCTGCCTTGGTTAGTTCTTGACTGTATATTCCAATATCTCACAAAGGAAAATACTCATGATGAACAAGTTGGAAGGTATAGTTCTCTAACTGATCTTACTCTCAAATTCTTTGAGATTTACACCACAGGACTTCGTCTACAGCTGATCGATGGAGCATCTGAAATCAGGCATTTATTTGACTTCATAAGAATCAGTATAGTTGGACCAAAAATGGTTACTGTGTTTTCTATTCATAGTTATCTGTTTCCTTCTGTGACAGAGCTGCAGCAAATTGGAGTCAAATTTAAAACCGGAGACATTTCTTGCAAAGTGATCGACATATCTTTCCGGGATGGAGATTCCAAGAATACGTATTTACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

20.3

Weight (kDa)

5.35

Isoelectric Point (pI)

37.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 3 - 166 2.4e-32 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 65
AccI GTMKAC 1 cut(s) 301
AciI CCGC 1 cut(s) 124
AclWI GGATC 1 cut(s) 92
AcsI RAATTY 5 cut(s) 14, 56, 112, 269, 446
AfaI GTAC 1 cut(s) 21
AgsI TTSAA 3 cut(s) 56, 93, 137
AluBI AGCT 3 cut(s) 166, 307, 427
AluI AGCT 3 cut(s) 166, 307, 427
Alw26I GTCTC 1 cut(s) 453
AlwI GGATC 1 cut(s) 92
ApeKI GCWGC 3 cut(s) 166, 427, 430
ApoI RAATTY 5 cut(s) 14, 56, 112, 269, 446
AspLEI GCGC 1 cut(s) 66
AspS9I GGNCC 2 cut(s) 126, 368
AsuC2I CCSGG 1 cut(s) 494
AvaII GGWCC 2 cut(s) 126, 368
BbsI GAAGAC 1 cut(s) 97
BbvI GCAGC 3 cut(s) 153, 414, 442
BccI CCATC 3 cut(s) 32, 308, 491
BcgI CGANNNNNNTGC 2 cut(s) 460, 494
BcnI CCSGG 1 cut(s) 494
BcoDI GTCTC 1 cut(s) 453
BfmI CTRYAG 2 cut(s) 302, 428
BisI GCNGC 3 cut(s) 167, 428, 431
BlsI GCNGC 3 cut(s) 168, 429, 432
Bme1390I CCNGG 1 cut(s) 494
Bme18I GGWCC 2 cut(s) 126, 368
BmgT120I GGNCC 2 cut(s) 126, 368
BmrFI CCNGG 1 cut(s) 494
BmsI GCATC 2 cut(s) 111, 329
BpiI GAAGAC 1 cut(s) 97
BpuMI CCSGG 1 cut(s) 494
Bsa29I ATCGAT 1 cut(s) 312
BsaAI YACGTR 1 cut(s) 516
BsaJI CCNNGG 1 cut(s) 170
BsaWI WCCGGW 1 cut(s) 455
Bse1I ACTGG 1 cut(s) 159
BseCI ATCGAT 1 cut(s) 312
BseDI CCNNGG 1 cut(s) 170
BseGI GGATG 2 cut(s) 126, 502
BseNI ACTGG 1 cut(s) 159
BseXI GCAGC 3 cut(s) 153, 414, 442
BshVI ATCGAT 1 cut(s) 312
BsiSI CCGG 2 cut(s) 456, 493
BsmAI GTCTC 1 cut(s) 453
Bsp1407I TGTACA 1 cut(s) 19
Bsp143I GATC 4 cut(s) 97, 256, 309, 477
BspACI CCGC 1 cut(s) 124
BspDI ATCGAT 1 cut(s) 312
BspHI TCATGA 1 cut(s) 220
BspMAI CTGCAG 1 cut(s) 432
BspPI GGATC 1 cut(s) 92
BsrGI TGTACA 1 cut(s) 19
BsrI ACTGG 1 cut(s) 159
BssECI CCNNGG 1 cut(s) 170
BssMI GATC 4 cut(s) 97, 256, 309, 477
BssT1I CCWWGG 1 cut(s) 170
Bst4CI ACNGT 3 cut(s) 188, 385, 525
BstAUI TGTACA 1 cut(s) 19
BstBAI YACGTR 1 cut(s) 516
BstF5I GGATG 2 cut(s) 126, 502
BstHHI GCGC 1 cut(s) 66
BstKTI GATC 4 cut(s) 100, 259, 312, 480
BstMAI GTCTC 1 cut(s) 453
BstMBI GATC 4 cut(s) 97, 256, 309, 477
BstSCI CCNGG 1 cut(s) 492
BstSFI CTRYAG 2 cut(s) 302, 428
BstSNI TACGTA 1 cut(s) 516
BstV1I GCAGC 3 cut(s) 153, 414, 442
BstV2I GAAGAC 1 cut(s) 97
Bsu15I ATCGAT 1 cut(s) 312
BsuTUI ATCGAT 1 cut(s) 312
BtsCI GGATG 2 cut(s) 126, 502
BtsI GCAGTG 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 13
CciI TCATGA 1 cut(s) 220
CfoI GCGC 1 cut(s) 66
Cfr13I GGNCC 2 cut(s) 126, 368
ClaI ATCGAT 1 cut(s) 312
Csp6I GTAC 1 cut(s) 20
CviAII CATG 3 cut(s) 61, 117, 221
CviJI RGCY 3 cut(s) 166, 307, 427
CviKI_1 RGCY 3 cut(s) 166, 307, 427
CviQI GTAC 1 cut(s) 20
DpnI GATC 4 cut(s) 99, 258, 311, 479
DpnII GATC 4 cut(s) 97, 256, 309, 477
DraI TTTAAA 1 cut(s) 451
Eco105I TACGTA 1 cut(s) 516
Eco130I CCWWGG 1 cut(s) 170
Eco47I GGWCC 2 cut(s) 126, 368
EcoRI GAATTC 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 170
FaeI CATG 3 cut(s) 64, 120, 224
FaiI YATR 9 cut(s) 62, 118, 191, 222, 243, 350, 362, 399, 485
FatI CATG 3 cut(s) 60, 116, 220
FblI GTMKAC 1 cut(s) 301
Fnu4HI GCNGC 3 cut(s) 167, 428, 431
FokI GGATG 2 cut(s) 133, 509
Fsp4HI GCNGC 3 cut(s) 167, 428, 431
FspI TGCGCA 1 cut(s) 65
GlaI GCGC 1 cut(s) 65
GluI GCNGC 3 cut(s) 167, 428, 431
HapII CCGG 2 cut(s) 456, 493
HhaI GCGC 1 cut(s) 66
Hin1II CATG 3 cut(s) 64, 120, 224
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HinfI GANTC 3 cut(s) 354, 441, 503
HpaII CCGG 2 cut(s) 456, 493
Hpy166II GTNNAC 1 cut(s) 302
Hpy188I TCNGA 1 cut(s) 325
Hpy188III TCNNGA 3 cut(s) 53, 182, 221
Hpy8I GTNNAC 1 cut(s) 302
HpyAV CCTTC 3 cut(s) 99, 231, 423
HpyCH4III ACNGT 3 cut(s) 188, 385, 525
HpyCH4IV ACGT 1 cut(s) 515
HpyCH4V TGCA 2 cut(s) 430, 471
HpySE526I ACGT 1 cut(s) 515
Hsp92II CATG 3 cut(s) 64, 120, 224
HspAI GCGC 1 cut(s) 64
Kzo9I GATC 4 cut(s) 97, 256, 309, 477
LmnI GCTCC 1 cut(s) 317
LpnPI CCDG 9 cut(s) 67, 114, 140, 158, 176, 276, 316, 469, 506
Lsp1109I GCAGC 3 cut(s) 153, 414, 442
LweI GCATC 2 cut(s) 111, 329
MaeII ACGT 1 cut(s) 515
MaeIII GTNAC 2 cut(s) 379, 418
MalI GATC 4 cut(s) 99, 258, 311, 479
MboI GATC 4 cut(s) 97, 256, 309, 477
MboII GAAGA 1 cut(s) 97
MluCI AATT 6 cut(s) 14, 56, 112, 269, 435, 446
MlyI GAGTC 1 cut(s) 450
MmeI TCCRAC 2 cut(s) 214, 346
MnlI CCTC 1 cut(s) 139
MseI TTAA 1 cut(s) 450
MspA1I CMGCKG 2 cut(s) 166, 307
MspI CCGG 2 cut(s) 456, 493
MspR9I CCNGG 1 cut(s) 494
NciI CCSGG 1 cut(s) 494
NdeII GATC 4 cut(s) 97, 256, 309, 477
NlaIII CATG 3 cut(s) 64, 120, 224
NmuCI GTSAC 1 cut(s) 418
NsbI TGCGCA 1 cut(s) 65
PagI TCATGA 1 cut(s) 220
PfeI GAWTC 2 cut(s) 354, 503
PflFI GACNNNGTC 1 cut(s) 297
PfoI TCCNGGA 1 cut(s) 492
PkrI GCNGC 3 cut(s) 168, 429, 432
PleI GAGTC 1 cut(s) 449
PpsI GAGTC 1 cut(s) 449
Ppu21I YACGTR 1 cut(s) 516
PspPI GGNCC 2 cut(s) 126, 368
PstI CTGCAG 1 cut(s) 432
PsyI GACNNNGTC 1 cut(s) 297
PvuII CAGCTG 2 cut(s) 166, 307
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
SaqAI TTAA 1 cut(s) 450
SatI GCNGC 3 cut(s) 167, 428, 431
Sau3AI GATC 4 cut(s) 97, 256, 309, 477
Sau96I GGNCC 2 cut(s) 126, 368
SchI GAGTC 1 cut(s) 450
ScrFI CCNGG 1 cut(s) 494
SetI ASST 7 cut(s) 86, 147, 168, 242, 309, 429, 518
SfaNI GCATC 2 cut(s) 111, 329
SfcI CTRYAG 2 cut(s) 302, 428
SinI GGWCC 2 cut(s) 126, 368
SnaBI TACGTA 1 cut(s) 516
Sse9I AATT 6 cut(s) 14, 56, 112, 269, 435, 446
SsiI CCGC 1 cut(s) 124
StyD4I CCNGG 1 cut(s) 492
StyI CCWWGG 1 cut(s) 170
TaaI ACNGT 3 cut(s) 188, 385, 525
TaiI ACGT 1 cut(s) 518
TaqI TCGA 2 cut(s) 312, 480
TasI AATT 6 cut(s) 14, 56, 112, 269, 435, 446
TatI WGTACW 1 cut(s) 19
TfiI GAWTC 2 cut(s) 354, 503
Tru1I TTAA 1 cut(s) 450
Tru9I TTAA 1 cut(s) 450
TscAI CASTG 1 cut(s) 13
TseFI GTSAC 1 cut(s) 418
TseI GCWGC 3 cut(s) 166, 427, 430
Tsp45I GTSAC 1 cut(s) 418
TspDTI ATGAA 6 cut(s) 37, 49, 105, 240, 337, 386
TspGWI ACGGA 1 cut(s) 121
TspRI CASTG 1 cut(s) 13
Tth111I GACNNNGTC 1 cut(s) 297
VpaK11BI GGWCC 2 cut(s) 126, 368
XapI RAATTY 5 cut(s) 14, 56, 112, 269, 446
XmiI GTMKAC 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.