Rh4AG004400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000442
Physical Location & Seq
Forward (+)
663764 .. 676332
12569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG004400.1

Sequence Viewer

Length: 1071 bp
ATGACTCCGACTCTCTCTCGAGAGAAATATCACCGGTCTCTTTCTTGGGAAAGCGGCGGCGACAAAACTACTCCTCTGCTTCTCTCTTCGGGTTGCGACGACGACAAATCTTTTCGTCAAACTCTATTCTCTGTTAGAGGAGGCGTATTTGCTGTATTTGATGGTGATTGGGTTCTAGTTCATCGGATCTGGTTTGGTGGAAGATTCCCAATTGGCAGTGATGTCGTTCCGACTAATTGTGCTGGAGGTTGGCATGCACAGAGCAGTGAACTGATTCCCAGATCTGTTGGCGGTGATGATTGCGGAGGCTTCTGTGCCGACAGAGGCAATTTGGATTCGGATCTTGGTGGCGGCGCTGGGGTCGCAATTTTGGGATGGTCAGAGATGGCAGAGTCCGTCCATTGTCATGGGTTGGCGGGGAAGCTTCTCTCTCCACGATCAGGCTGGATGGCTAGTGTTGGTGTCCGAATTGGCAGGGAAGACGACGTTGACCCGTCTGAGTTGGGCAGTAATGAAGTTGGCGGCGGCTGTGGGAAAGCGATCCATGACAGACTCTTTGCCGTGCTCTCTGCCTCTCTCGTAGAGTCCATGACTGCATCTCTCTCTTCTTCATCCAAACCCACAATTTCAGAGCGAGAGAGATCTGAGCTGGGATTGGGTTCTGAAGTGAAGGTACTGGGTAGTGAAGGTAGTGAAGGCAAACCCATGAGTACAAATGATGAGTCCCAATTTATATCTACGGAGGAAAGAGGAGAAGATGTAATAGGAAATGTACTAAGAGATGATTTGCCTTCTAGAAGAAAGAAGAGGAAGAAGAGTTCTCAATGTTGGTTGTCTTCTAAATATGGTGGTGCAACTGTGATGTTCGTAGATGAAGAAGGTGAGGTTACCCGACTATATACTTGGGGAACAATGAAGGACTTACCGTGTCCTTGCTACTGCTCTTTTCTTGTGCCAATGTGCAAGTGTCTTTGGTATCTCAGCGGAGTCAAGCCGAGTGGCAAAATATGTTTGTCTAACTTCAAGATAACTAGTGGTAGATATCTGCTTTTGGAAATGCATCAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

356

Amino Acids

38.45

Weight (kDa)

5.73

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 9 cut(s) 54, 57, 291, 303, 351, 416, 522, 525, 984
AclWI GGATC 3 cut(s) 194, 348, 535
AcuI CTGAAG 1 cut(s) 684
AfaI GTAC 3 cut(s) 675, 712, 774
AfiI CCNNNNNNNGG 1 cut(s) 440
AgeI ACCGGT 1 cut(s) 33
AgsI TTSAA 1 cut(s) 1024
AhlI ACTAGT 1 cut(s) 1031
AloI GAACNNNNNNTCC 2 cut(s) 802, 834
AluBI AGCT 2 cut(s) 424, 649
AluI AGCT 2 cut(s) 424, 649
Alw21I GWGCWC 1 cut(s) 567
Alw26I GTCTC 1 cut(s) 42
AlwI GGATC 3 cut(s) 194, 348, 535
Ama87I CYCGRG 1 cut(s) 18
ArsI GACNNNNNNTTYG 4 cut(s) 539, 571, 707, 739
AsiGI ACCGGT 1 cut(s) 33
Asp700I GAANNNNTTC 1 cut(s) 273
AspLEI GCGC 1 cut(s) 356
AsuHPI GGTGA 4 cut(s) 23, 176, 305, 893
AvaI CYCGRG 1 cut(s) 18
BarI GAAGNNNNNNTAC 2 cut(s) 657, 689
BbsI GAAGAC 2 cut(s) 486, 828
Bbv12I GWGCWC 1 cut(s) 567
BccI CCATC 4 cut(s) 155, 369, 379, 442
BceAI ACGGC 1 cut(s) 545
BcgI CGANNNNNNTGC 2 cut(s) 205, 239
BcoDI GTCTC 1 cut(s) 42
BcuI ACTAGT 1 cut(s) 1031
BfaI CTAG 4 cut(s) 176, 453, 795, 1032
BfoI RGCGCY 1 cut(s) 357
BglII AGATCT 2 cut(s) 281, 641
BisI GCNGC 5 cut(s) 55, 58, 352, 523, 526
BlsI GCNGC 5 cut(s) 56, 59, 353, 524, 527
BmeT110I CYCGRG 1 cut(s) 18
BmrI ACTGGG 1 cut(s) 686
BmsI GCATC 1 cut(s) 605
BmuI ACTGGG 1 cut(s) 686
BpiI GAAGAC 2 cut(s) 486, 828
BpmI CTGGAG 1 cut(s) 264
BsaBI GATNNNNATC 1 cut(s) 339
BsaI GGTCTC 1 cut(s) 42
BsaWI WCCGGW 1 cut(s) 33
BsaXI ACNNNNNCTCC 2 cut(s) 744, 774
Bsc4I CCNNNNNNNGG 1 cut(s) 440
Bse118I RCCGGY 1 cut(s) 33
Bse1I ACTGG 1 cut(s) 681
Bse8I GATNNNNATC 1 cut(s) 339
BseGI GGATG 3 cut(s) 380, 453, 611
BseJI GATNNNNATC 1 cut(s) 339
BseLI CCNNNNNNNGG 1 cut(s) 440
BseMII CTCAG 3 cut(s) 489, 636, 994
BseNI ACTGG 1 cut(s) 681
BseRI GAGGAG 3 cut(s) 63, 153, 765
BseYI CCCAGC 2 cut(s) 356, 649
BshTI ACCGGT 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 567
BsiHKCI CYCGRG 1 cut(s) 18
BsiSI CCGG 1 cut(s) 34
BslFI GGGAC 1 cut(s) 709
BslI CCNNNNNNNGG 1 cut(s) 440
BsmAI GTCTC 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 709
Bso31I GGTCTC 1 cut(s) 42
BsoBI CYCGRG 1 cut(s) 18
Bsp1286I GDGCHC 1 cut(s) 567
Bsp143I GATC 6 cut(s) 186, 281, 340, 437, 540, 641
BspACI CCGC 9 cut(s) 54, 57, 291, 303, 351, 416, 522, 525, 984
BspCNI CTCAG 3 cut(s) 490, 637, 993
BspPI GGATC 3 cut(s) 194, 348, 535
BspTNI GGTCTC 1 cut(s) 42
BsrFI RCCGGY 1 cut(s) 33
BsrI ACTGG 1 cut(s) 681
BssAI RCCGGY 1 cut(s) 33
BssMI GATC 6 cut(s) 186, 281, 340, 437, 540, 641
Bst4CI ACNGT 2 cut(s) 859, 927
Bst6I CTCTTC 4 cut(s) 91, 610, 800, 809
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 4 cut(s) 498, 645, 776, 980
BstEII GGTNACC 1 cut(s) 886
BstF5I GGATG 3 cut(s) 380, 453, 611
BstH2I RGCGCY 1 cut(s) 357
BstHHI GCGC 1 cut(s) 356
BstKTI GATC 6 cut(s) 189, 284, 343, 440, 543, 644
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 6 cut(s) 186, 281, 340, 437, 540, 641
BstMWI GCNNNNNNNGC 1 cut(s) 362
BstNSI RCATGY 1 cut(s) 257
BstPI GGTNACC 1 cut(s) 886
BstV2I GAAGAC 2 cut(s) 486, 828
BstX2I RGATCY 4 cut(s) 186, 281, 340, 641
BstXI CCANNNNNNTGG 1 cut(s) 407
BstYI RGATCY 4 cut(s) 186, 281, 340, 641
BtsCI GGATG 3 cut(s) 380, 453, 611
BtsI GCAGTG 2 cut(s) 223, 271
BtsIMutI CAGTG 2 cut(s) 223, 271
Cac8I GCNNGC 1 cut(s) 255
CfoI GCGC 1 cut(s) 356
Cfr10I RCCGGY 1 cut(s) 33
Csp6I GTAC 3 cut(s) 674, 711, 773
CspAI ACCGGT 1 cut(s) 33
CspCI CAANNNNNGTGG 2 cut(s) 979, 1014
CviAII CATG 5 cut(s) 254, 407, 545, 589, 706
CviJI RGCY 7 cut(s) 309, 424, 444, 452, 528, 649, 994
CviKI_1 RGCY 7 cut(s) 309, 424, 444, 452, 528, 649, 994
CviQI GTAC 3 cut(s) 674, 711, 773
DdeI CTNAG 4 cut(s) 498, 645, 776, 980
DpnI GATC 6 cut(s) 188, 283, 342, 439, 542, 643
DpnII GATC 6 cut(s) 186, 281, 340, 437, 540, 641
Eam1104I CTCTTC 4 cut(s) 91, 610, 800, 809
EarI CTCTTC 4 cut(s) 91, 610, 800, 809
Eco31I GGTCTC 1 cut(s) 42
Eco32I GATATC 1 cut(s) 1043
Eco57I CTGAAG 1 cut(s) 684
Eco88I CYCGRG 1 cut(s) 18
Eco91I GGTNACC 1 cut(s) 886
EcoO65I GGTNACC 1 cut(s) 886
EcoRV GATATC 1 cut(s) 1043
EcoT22I ATGCAT 1 cut(s) 1062
FaeI CATG 5 cut(s) 257, 410, 548, 592, 709
FaqI GGGAC 1 cut(s) 709
FatI CATG 5 cut(s) 253, 406, 544, 588, 705
FauI CCCGC 1 cut(s) 409
Fnu4HI GCNGC 5 cut(s) 55, 58, 352, 523, 526
FokI GGATG 3 cut(s) 387, 460, 598
Fsp4HI GCNGC 5 cut(s) 55, 58, 352, 523, 526
FspBI CTAG 4 cut(s) 176, 453, 795, 1032
GlaI GCGC 1 cut(s) 355
GluI GCNGC 5 cut(s) 55, 58, 352, 523, 526
GsaI CCCAGC 2 cut(s) 360, 653
GsuI CTGGAG 1 cut(s) 264
HaeII RGCGCY 1 cut(s) 357
HapII CCGG 1 cut(s) 34
HhaI GCGC 1 cut(s) 356
Hin1II CATG 5 cut(s) 257, 410, 548, 592, 709
Hin6I GCGC 1 cut(s) 354
HinP1I GCGC 1 cut(s) 354
HincII GTYRAC 1 cut(s) 490
HindII GTYRAC 1 cut(s) 490
HindIII AAGCTT 1 cut(s) 422
HpaII CCGG 1 cut(s) 34
HphI GGTGA 4 cut(s) 23, 176, 305, 893
Hpy166II GTNNAC 2 cut(s) 269, 490
Hpy188III TCNNGA 4 cut(s) 18, 20, 795, 1024
Hpy8I GTNNAC 2 cut(s) 269, 490
Hpy99I CGWCG 3 cut(s) 101, 104, 488
HpyAV CCTTC 6 cut(s) 664, 680, 689, 801, 872, 910
HpyCH4III ACNGT 2 cut(s) 859, 927
HpyCH4IV ACGT 1 cut(s) 486
HpyCH4V TGCA 5 cut(s) 257, 596, 854, 963, 1060
HpyF10VI GCNNNNNNNGC 1 cut(s) 362
HpyF3I CTNAG 4 cut(s) 498, 645, 776, 980
HpySE526I ACGT 1 cut(s) 486
Hsp92II CATG 5 cut(s) 257, 410, 548, 592, 709
HspAI GCGC 1 cut(s) 354
Kzo9I GATC 6 cut(s) 186, 281, 340, 437, 540, 641
LweI GCATC 1 cut(s) 605
MaeI CTAG 4 cut(s) 176, 453, 795, 1032
MaeII ACGT 1 cut(s) 486
MaeIII GTNAC 1 cut(s) 886
MalI GATC 6 cut(s) 188, 283, 342, 439, 542, 643
MboI GATC 6 cut(s) 186, 281, 340, 437, 540, 641
MfeI CAATTG 1 cut(s) 210
MflI RGATCY 4 cut(s) 186, 281, 340, 641
MhlI GDGCHC 1 cut(s) 567
MluCI AATT 7 cut(s) 210, 235, 328, 366, 468, 624, 728
MlyI GAGTC 6 cut(s) 4, 401, 546, 593, 731, 996
MmeI TCCRAC 2 cut(s) 32, 254
Mph1103I ATGCAT 1 cut(s) 1062
MroXI GAANNNNTTC 1 cut(s) 273
MslI CAYNNNNRTG 1 cut(s) 405
MspA1I CMGCKG 1 cut(s) 984
MspI CCGG 1 cut(s) 34
MunI CAATTG 1 cut(s) 210
MwoI GCNNNNNNNGC 1 cut(s) 362
NdeII GATC 6 cut(s) 186, 281, 340, 437, 540, 641
NlaIII CATG 5 cut(s) 257, 410, 548, 592, 709
NmeAIII GCCGAG 1 cut(s) 1020
NsiI ATGCAT 1 cut(s) 1062
NspI RCATGY 1 cut(s) 257
PaeI GCATGC 1 cut(s) 257
PaeR7I CTCGAG 1 cut(s) 18
PdmI GAANNNNTTC 1 cut(s) 273
PfeI GAWTC 3 cut(s) 204, 274, 335
PinAI ACCGGT 1 cut(s) 33
PkrI GCNGC 5 cut(s) 56, 59, 353, 524, 527
PleI GAGTC 6 cut(s) 4, 400, 546, 592, 730, 995
PpsI GAGTC 6 cut(s) 4, 400, 546, 592, 730, 995
PspEI GGTNACC 1 cut(s) 886
PspFI CCCAGC 2 cut(s) 356, 649
PsuI RGATCY 4 cut(s) 186, 281, 340, 641
RsaI GTAC 3 cut(s) 675, 712, 774
RsaNI GTAC 3 cut(s) 674, 711, 773
RseI CAYNNNNRTG 1 cut(s) 405
SatI GCNGC 5 cut(s) 55, 58, 352, 523, 526
Sau3AI GATC 6 cut(s) 186, 281, 340, 437, 540, 641
SchI GAGTC 6 cut(s) 4, 401, 546, 593, 731, 996
SduI GDGCHC 1 cut(s) 567
SetI ASST 8 cut(s) 250, 426, 489, 651, 675, 691, 883, 888
SfaNI GCATC 1 cut(s) 605
Sfr274I CTCGAG 1 cut(s) 18
SlaI CTCGAG 1 cut(s) 18
SmiMI CAYNNNNRTG 1 cut(s) 405
SmlI CTYRAG 1 cut(s) 18
SmoI CTYRAG 1 cut(s) 18
SpeI ACTAGT 1 cut(s) 1031
SphI GCATGC 1 cut(s) 257
Sse9I AATT 7 cut(s) 210, 235, 328, 366, 468, 624, 728
SsiI CCGC 9 cut(s) 54, 57, 291, 303, 351, 416, 522, 525, 984
SspMI CTAG 4 cut(s) 176, 453, 795, 1032
TaaI ACNGT 2 cut(s) 859, 927
TaiI ACGT 1 cut(s) 489
TaqI TCGA 1 cut(s) 19
TasI AATT 7 cut(s) 210, 235, 328, 366, 468, 624, 728
TatI WGTACW 2 cut(s) 710, 772
TauI GCSGC 5 cut(s) 57, 60, 354, 525, 528
TfiI GAWTC 3 cut(s) 204, 274, 335
TscAI CASTG 2 cut(s) 223, 271
TspDTI ATGAA 5 cut(s) 170, 528, 600, 888, 929
TspGWI ACGGA 2 cut(s) 385, 755
TspRI CASTG 2 cut(s) 223, 271
XbaI TCTAGA 1 cut(s) 794
XceI RCATGY 1 cut(s) 257
XcmI CCANNNNNNNNNTGG 1 cut(s) 441
XhoI CTCGAG 1 cut(s) 18
XmnI GAANNNNTTC 1 cut(s) 273
XspI CTAG 4 cut(s) 176, 453, 795, 1032
Zsp2I ATGCAT 1 cut(s) 1062
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.