Rh2CG610100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000442
Physical Location & Seq
Reverse (-)
78730621 .. 78731079
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG610100.1

Sequence Viewer

Length: 333 bp
ATGGCCACGCTACCATTTCCCAAGTTGTACCTTGAAAAGGTGAAGCTAGAGGCAGAACTGGACATTAAGAAGGCTTGGGTCAGAGAAGTACTTCAAGGGGCAATGAAGGTGGGCAAAGAATTCCACCATCCAGGATGGATTTGTAACTTCAGATTGTATTCGGATTCGGCAGGCATGGCCGCCCTACCATTTCCCAAGTTGTACCTTGAAGAGGTGAAGCTAGAGGCAGAACTGGACATTAAGAAGGCTTGGGTCAGAGTAGTACTTCAAGAGGCAATGAAGGTGGGCAAAGAATTCCACCATCCAGGATGGATTTGTAACTTCAGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.73

Weight (kDa)

8.53

Isoelectric Point (pI)

21.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 180
AcoI YGGCCR 2 cut(s) 3, 177
AcsI RAATTY 2 cut(s) 119, 293
AcuI CTGAAG 2 cut(s) 133, 307
AfaI GTAC 4 cut(s) 29, 90, 203, 264
AfiI CCNNNNNNNGG 2 cut(s) 37, 211
AgsI TTSAA 4 cut(s) 35, 95, 209, 269
AjnI CCWGG 2 cut(s) 130, 304
AluBI AGCT 2 cut(s) 46, 220
AluI AGCT 2 cut(s) 46, 220
AoxI GGCC 2 cut(s) 3, 177
ApoI RAATTY 2 cut(s) 119, 293
Asp700I GAANNNNTTC 1 cut(s) 90
AsuHPI GGTGA 2 cut(s) 52, 226
BalI TGGCCA 1 cut(s) 5
BccI CCATC 4 cut(s) 129, 135, 303, 309
BciT130I CCWGG 2 cut(s) 132, 306
BfaI CTAG 2 cut(s) 47, 221
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
BmcAI AGTACT 2 cut(s) 90, 264
Bme1390I CCNGG 2 cut(s) 132, 306
BmrFI CCNGG 2 cut(s) 132, 306
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 211
Bse1I ACTGG 2 cut(s) 63, 237
Bse3DI GCAATG 2 cut(s) 108, 282
BseBI CCWGG 2 cut(s) 132, 306
BseGI GGATG 4 cut(s) 127, 140, 301, 314
BseLI CCNNNNNNNGG 2 cut(s) 37, 211
BseMI GCAATG 2 cut(s) 108, 282
BseNI ACTGG 2 cut(s) 63, 237
BshFI GGCC 2 cut(s) 5, 179
BslI CCNNNNNNNGG 2 cut(s) 37, 211
BsnI GGCC 2 cut(s) 5, 179
BspACI CCGC 1 cut(s) 180
BspANI GGCC 2 cut(s) 5, 179
BsrDI GCAATG 2 cut(s) 108, 282
BsrI ACTGG 2 cut(s) 63, 237
Bst2UI CCWGG 2 cut(s) 132, 306
Bst6I CTCTTC 1 cut(s) 204
BstC8I GCNNGC 1 cut(s) 172
BstENI CCTNNNNNAGG 2 cut(s) 35, 209
BstF5I GGATG 4 cut(s) 127, 140, 301, 314
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNI CCWGG 2 cut(s) 132, 306
BstSCI CCNGG 2 cut(s) 130, 304
BsuRI GGCC 2 cut(s) 5, 179
BtsCI GGATG 4 cut(s) 127, 140, 301, 314
Cac8I GCNNGC 1 cut(s) 172
Csp6I GTAC 4 cut(s) 28, 89, 202, 263
CspCI CAANNNNNGTGG 4 cut(s) 90, 125, 264, 299
CviAII CATG 1 cut(s) 175
CviJI RGCY 6 cut(s) 5, 46, 74, 179, 220, 248
CviKI_1 RGCY 6 cut(s) 5, 46, 74, 179, 220, 248
CviQI GTAC 4 cut(s) 28, 89, 202, 263
EaeI YGGCCR 2 cut(s) 3, 177
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Eco57I CTGAAG 2 cut(s) 133, 307
EcoNI CCTNNNNNAGG 2 cut(s) 35, 209
EcoRI GAATTC 2 cut(s) 119, 293
EcoRII CCWGG 2 cut(s) 130, 304
FaeI CATG 1 cut(s) 178
FaiI YATR 1 cut(s) 176
FatI CATG 1 cut(s) 174
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 4 cut(s) 114, 147, 288, 321
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 2 cut(s) 47, 221
GluI GCNGC 1 cut(s) 180
HaeIII GGCC 2 cut(s) 5, 179
Hin1II CATG 1 cut(s) 178
HinfI GANTC 1 cut(s) 164
HphI GGTGA 2 cut(s) 52, 226
Hpy188I TCNGA 4 cut(s) 83, 152, 163, 257
Hpy188III TCNNGA 1 cut(s) 269
HpyAV CCTTC 4 cut(s) 64, 100, 238, 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
Hsp92II CATG 1 cut(s) 178
LpnPI CCDG 7 cut(s) 44, 117, 144, 156, 218, 291, 318
MaeI CTAG 2 cut(s) 47, 221
MaeIII GTNAC 2 cut(s) 143, 317
MboII GAAGA 1 cut(s) 221
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 119, 293
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 4 cut(s) 43, 205, 217, 265
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 90
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 66, 240
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 2 cut(s) 132, 306
MvaI CCWGG 2 cut(s) 132, 306
MwoI GCNNNNNNNGC 1 cut(s) 176
NlaIII CATG 1 cut(s) 178
PdmI GAANNNNTTC 1 cut(s) 90
PfeI GAWTC 1 cut(s) 164
PfoI TCCNGGA 2 cut(s) 130, 304
PkrI GCNGC 1 cut(s) 181
Psp6I CCWGG 2 cut(s) 130, 304
PspGI CCWGG 2 cut(s) 130, 304
RsaI GTAC 4 cut(s) 29, 90, 203, 264
RsaNI GTAC 4 cut(s) 28, 89, 202, 263
SaqAI TTAA 2 cut(s) 66, 240
SatI GCNGC 1 cut(s) 180
ScaI AGTACT 2 cut(s) 90, 264
ScrFI CCNGG 2 cut(s) 132, 306
SetI ASST 8 cut(s) 33, 42, 48, 111, 207, 216, 222, 285
Sse9I AATT 2 cut(s) 119, 293
SsiI CCGC 1 cut(s) 180
SspMI CTAG 2 cut(s) 47, 221
StyD4I CCNGG 2 cut(s) 130, 304
TasI AATT 2 cut(s) 119, 293
TatI WGTACW 2 cut(s) 88, 262
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 1 cut(s) 164
Tru1I TTAA 2 cut(s) 66, 240
Tru9I TTAA 2 cut(s) 66, 240
TspDTI ATGAA 2 cut(s) 119, 293
XagI CCTNNNNNAGG 2 cut(s) 35, 209
XapI RAATTY 2 cut(s) 119, 293
XmnI GAANNNNTTC 1 cut(s) 90
XspI CTAG 2 cut(s) 47, 221
ZrmI AGTACT 2 cut(s) 90, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.