Rw2G052290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000442
Physical Location & Seq
Reverse (-)
80269769 .. 80270705
937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G052290.1

Sequence Viewer

Length: 750 bp
ATGGGCATTGTTGGTGGATCCCTAGCTTTAAATCACATTAAAGTGATCGGTTATAGAGCTAGACTTCCACAAGATGAGTACAACTCCTCGGTGCATAAGAATTATATTGAGGGATACAAAGATTTCTTTGACGACTTATTTGGAGGCAGTAGTGAACCATTGGACGACGAGAATTATATAGACATCAAGTCATATGTGAAGGATTTGAAGACAATAGACCAAATGTTATTGCTGCTTCGCCACCCTTATTTTCAATCAGTGGATGAAGCTCTGAGATTCATTCCATCCGCCCTTAAATTACTTGATGGCTTATGGGATAAAAAGTTTCCACGTCCAAGAACAGGGGCTAGTCAAGCAACCCCCGATCAAGCAACAATAGTGCGTGTCGAAAATCAACGCAGTTGGAAACGTGTATACAAGACTGTATGCTGCGAAGATAGAGTTAATATTTCAGAGTCAATTGGCAGAATTGAATCTGAAGATTACAGACGTGGATTTACGTCTCTGTATAATGCTGAAAAGAATGGCACACCGTATGAAGACACCGATGTGATAGATGAGCTGAAATTTTATGGAAACGCGTGTAAACATCTAGTAAAACATATGAAGATACGTAGCGAAAGTGATTTATACCAAGCCTTGTGTCGGGCGTTTCCAGACGTGCCCAGAAAAGTGTTCAAGTTTTTCTGGACCTATGCAGGATATCACGACGGGCAAGTTAACTTGGAGTTTGTCAGACCTCTGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

249

Amino Acids

28.92

Weight (kDa)

6.6

Isoelectric Point (pI)

37.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 414
AccII CGCG 1 cut(s) 581
AciI CCGC 1 cut(s) 288
AclWI GGATC 2 cut(s) 12, 25
AcsI RAATTY 1 cut(s) 566
AcuI CTGAAG 1 cut(s) 498
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 2 cut(s) 341, 645
AflIII ACRYGT 2 cut(s) 409, 579
AgsI TTSAA 4 cut(s) 208, 254, 473, 679
AhdI GACNNNNNGTC 1 cut(s) 187
AjiI CACGTC 3 cut(s) 332, 491, 661
AleI CACNNNNGTG 1 cut(s) 548
AluBI AGCT 4 cut(s) 26, 59, 269, 562
AluI AGCT 4 cut(s) 26, 59, 269, 562
Alw26I GTCTC 1 cut(s) 507
AlwI GGATC 2 cut(s) 12, 25
ApeKI GCWGC 2 cut(s) 232, 429
ApoI RAATTY 1 cut(s) 566
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
AspS9I GGNCC 1 cut(s) 690
AvaII GGWCC 1 cut(s) 690
BaeGI GKGCMC 1 cut(s) 666
BamHI GGATCC 1 cut(s) 17
BbsI GAAGAC 2 cut(s) 215, 546
BbvI GCAGC 2 cut(s) 219, 416
BccI CCATC 2 cut(s) 292, 299
BciVI GTATCC 1 cut(s) 107
BcoDI GTCTC 1 cut(s) 507
BfaI CTAG 4 cut(s) 23, 60, 348, 593
BfuI GTATCC 1 cut(s) 107
BisI GCNGC 2 cut(s) 233, 430
BlsI GCNGC 2 cut(s) 234, 431
Bme18I GGWCC 1 cut(s) 690
BmeRI GACNNNNNGTC 1 cut(s) 187
BmgBI CACGTC 3 cut(s) 332, 491, 661
BmgT120I GGNCC 1 cut(s) 690
BmiI GGNNCC 1 cut(s) 19
BpiI GAAGAC 2 cut(s) 215, 546
BplI GAGNNNNNCTC 2 cut(s) 68, 100
BsaAI YACGTR 1 cut(s) 614
BsaJI CCNNGG 1 cut(s) 87
Bsc4I CCNNNNNNNGG 2 cut(s) 341, 645
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 2 cut(s) 268, 284
BseLI CCNNNNNNNGG 2 cut(s) 341, 645
BseMII CTCAG 1 cut(s) 263
BseRI GAGGAG 1 cut(s) 76
BseSI GKGCMC 1 cut(s) 666
BseXI GCAGC 2 cut(s) 219, 416
Bsh1236I CGCG 1 cut(s) 581
BslI CCNNNNNNNGG 2 cut(s) 341, 645
BsmAI GTCTC 1 cut(s) 507
BsmBI CGTCTC 1 cut(s) 507
Bsp1286I GDGCHC 1 cut(s) 666
Bsp143I GATC 3 cut(s) 17, 45, 364
BspACI CCGC 1 cut(s) 288
BspCNI CTCAG 1 cut(s) 264
BspFNI CGCG 1 cut(s) 581
BspLI GGNNCC 1 cut(s) 19
BspPI GGATC 2 cut(s) 12, 25
BssECI CCNNGG 1 cut(s) 87
BssMI GATC 3 cut(s) 17, 45, 364
BssNAI GTATAC 1 cut(s) 415
Bst1107I GTATAC 1 cut(s) 415
Bst4CI ACNGT 2 cut(s) 424, 534
BstBAI YACGTR 1 cut(s) 614
BstDEI CTNAG 1 cut(s) 272
BstF5I GGATG 2 cut(s) 268, 284
BstFNI CGCG 1 cut(s) 581
BstKTI GATC 3 cut(s) 20, 48, 367
BstMAI GTCTC 1 cut(s) 507
BstMBI GATC 3 cut(s) 17, 45, 364
BstMWI GCNNNNNNNGC 1 cut(s) 353
BstSLI GKGCMC 1 cut(s) 666
BstSNI TACGTA 1 cut(s) 614
BstUI CGCG 1 cut(s) 581
BstV1I GCAGC 2 cut(s) 219, 416
BstV2I GAAGAC 2 cut(s) 215, 546
BstX2I RGATCY 1 cut(s) 17
BstYI RGATCY 1 cut(s) 17
BstZ17I GTATAC 1 cut(s) 415
BsuI GTATCC 1 cut(s) 107
BtrI CACGTC 3 cut(s) 332, 491, 661
BtsCI GGATG 2 cut(s) 268, 284
BtsIMutI CAGTG 1 cut(s) 264
Cfr13I GGNCC 1 cut(s) 690
Csp6I GTAC 1 cut(s) 79
CviJI RGCY 7 cut(s) 26, 59, 269, 309, 347, 562, 638
CviKI_1 RGCY 7 cut(s) 26, 59, 269, 309, 347, 562, 638
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 1 cut(s) 272
DpnI GATC 3 cut(s) 19, 47, 366
DpnII GATC 3 cut(s) 17, 45, 364
DraI TTTAAA 1 cut(s) 30
DriI GACNNNNNGTC 1 cut(s) 187
Eam1105I GACNNNNNGTC 1 cut(s) 187
EciI GGCGGA 1 cut(s) 277
Eco105I TACGTA 1 cut(s) 614
Eco32I GATATC 1 cut(s) 704
Eco47I GGWCC 1 cut(s) 690
Eco57I CTGAAG 1 cut(s) 498
EcoRV GATATC 1 cut(s) 704
Esp3I CGTCTC 1 cut(s) 507
FauNDI CATATG 2 cut(s) 193, 603
FblI GTMKAC 1 cut(s) 414
Fnu4HI GCNGC 2 cut(s) 233, 430
FokI GGATG 2 cut(s) 271, 275
Fsp4HI GCNGC 2 cut(s) 233, 430
FspBI CTAG 4 cut(s) 23, 60, 348, 593
GluI GCNGC 2 cut(s) 233, 430
HincII GTYRAC 1 cut(s) 721
HindII GTYRAC 1 cut(s) 721
HinfI GANTC 3 cut(s) 276, 455, 473
HpaI GTTAAC 1 cut(s) 721
Hpy166II GTNNAC 4 cut(s) 155, 415, 587, 721
Hpy188I TCNGA 5 cut(s) 273, 454, 478, 737, 744
Hpy188III TCNNGA 3 cut(s) 656, 688, 707
Hpy8I GTNNAC 4 cut(s) 155, 415, 587, 721
Hpy99I CGWCG 2 cut(s) 170, 713
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 2 cut(s) 424, 534
HpyCH4IV ACGT 6 cut(s) 331, 409, 490, 500, 613, 660
HpyCH4V TGCA 2 cut(s) 94, 698
HpyF10VI GCNNNNNNNGC 1 cut(s) 353
HpyF3I CTNAG 1 cut(s) 272
HpySE526I ACGT 6 cut(s) 331, 409, 490, 500, 613, 660
KspAI GTTAAC 1 cut(s) 721
Kzo9I GATC 3 cut(s) 17, 45, 364
LpnPI CCDG 5 cut(s) 327, 669, 673, 679, 684
Lsp1109I GCAGC 2 cut(s) 219, 416
MaeI CTAG 4 cut(s) 23, 60, 348, 593
MaeII ACGT 6 cut(s) 331, 409, 490, 500, 613, 660
MalI GATC 3 cut(s) 19, 47, 366
MboI GATC 3 cut(s) 17, 45, 364
MboII GAAGA 5 cut(s) 220, 446, 491, 551, 619
MfeI CAATTG 1 cut(s) 459
MflI RGATCY 1 cut(s) 17
MhlI GDGCHC 1 cut(s) 666
MluCI AATT 6 cut(s) 100, 172, 296, 459, 468, 566
MluI ACGCGT 1 cut(s) 579
MlyI GAGTC 1 cut(s) 464
MmeI TCCRAC 1 cut(s) 383
MnlI CCTC 4 cut(s) 97, 103, 137, 750
MseI TTAA 5 cut(s) 29, 39, 294, 444, 720
MslI CAYNNNNRTG 2 cut(s) 41, 548
MunI CAATTG 1 cut(s) 459
MvnI CGCG 1 cut(s) 581
MwoI GCNNNNNNNGC 1 cut(s) 353
NdeI CATATG 2 cut(s) 193, 603
NdeII GATC 3 cut(s) 17, 45, 364
NlaIV GGNNCC 1 cut(s) 19
OliI CACNNNNGTG 1 cut(s) 548
PfeI GAWTC 2 cut(s) 276, 473
PkrI GCNGC 2 cut(s) 234, 431
PleI GAGTC 1 cut(s) 463
PpsI GAGTC 1 cut(s) 463
Ppu21I YACGTR 1 cut(s) 614
PspN4I GGNNCC 1 cut(s) 19
PspPI GGNCC 1 cut(s) 690
PsuI RGATCY 1 cut(s) 17
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
RseI CAYNNNNRTG 2 cut(s) 41, 548
SaqAI TTAA 5 cut(s) 29, 39, 294, 444, 720
SatI GCNGC 2 cut(s) 233, 430
Sau3AI GATC 3 cut(s) 17, 45, 364
Sau96I GGNCC 1 cut(s) 690
SchI GAGTC 1 cut(s) 464
SduI GDGCHC 1 cut(s) 666
SinI GGWCC 1 cut(s) 690
SmiMI CAYNNNNRTG 2 cut(s) 41, 548
SnaBI TACGTA 1 cut(s) 614
Sse9I AATT 6 cut(s) 100, 172, 296, 459, 468, 566
SsiI CCGC 1 cut(s) 288
SspI AATATT 1 cut(s) 448
SspMI CTAG 4 cut(s) 23, 60, 348, 593
TaaI ACNGT 2 cut(s) 424, 534
TaiI ACGT 6 cut(s) 334, 412, 493, 503, 616, 663
TaqI TCGA 1 cut(s) 387
TasI AATT 6 cut(s) 100, 172, 296, 459, 468, 566
TatI WGTACW 1 cut(s) 78
TfiI GAWTC 2 cut(s) 276, 473
Tru1I TTAA 5 cut(s) 29, 39, 294, 444, 720
Tru9I TTAA 5 cut(s) 29, 39, 294, 444, 720
TscAI CASTG 1 cut(s) 264
TseI GCWGC 2 cut(s) 232, 429
TspDTI ATGAA 4 cut(s) 268, 279, 552, 620
TspRI CASTG 1 cut(s) 264
VpaK11BI GGWCC 1 cut(s) 690
XapI RAATTY 1 cut(s) 566
XmiI GTMKAC 1 cut(s) 414
XspI CTAG 4 cut(s) 23, 60, 348, 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.