Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002378.1

Orthogroup ID

OG0015769

Physical Location & Seq

Genomic Coordinates Reverse (-)

89795 .. 90648

Gene Structure 854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002378.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atggaggtgatttggggattgaaagatcgacttacgattgtggcccaagatgatgagaggtttctgtttaagttcaaggtgaaaaaggattgcattacggtttttcatgggagaccttgggactacagaggaaaaatgttgtttcttgggcagtctgataggcttggcgacattggcagagtcccacttcattcacttaaaacatggggcattgatcaacatccggcgtccactatggagcagtcggagctttcagttcaaggtgggggagggggggggggtgaaggtgctatggtgatcccagcgatgatagtgctagggacgaggctagaaaaggtgcggcaaggagtgcaaaaggttccggagtcaacaatgatgaggtcattctcaatggcagatgcgaatgcaattccaggatgggattcagcgattggcaatgcgacacctatagagattgtgaagccggtggcggcgatggaagagccaaaggcggtgctatgtctttcaaaggtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4283

Protein Analysis

171

Amino Acids

18.71

Weight (kDa)

7.78

Isoelectric Point (pI)

30.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015769)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007775 RLG00000013915 RLG00000013916 RLG00000016936 RLG00000019193 RLG00000030532 RLG00000033599 RLG00000034539
rosa_multiflora	Rmu_sc0002378.1_g000019
rosa_roxburghii	Rroxscaffold_3G00219960 Rroxscaffold_4G00329080 Rroxscaffold_5G00343050
rosa_rugosa	Rorug02G0085600
rosa_samantha	Rh6AG180100 Rh6BG163900 Rh7AG490700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	361
AciI	CCGC	3 cut(s)	340, 470, 491
AclWI	GGATC	1 cut(s)	292
AcyI	GRCGYC	1 cut(s)	227
AgsI	TTSAA	4 cut(s)	22, 76, 260, 507
AjnI	CCWGG	1 cut(s)	412
AluBI	AGCT	1 cut(s)	250
AluI	AGCT	1 cut(s)	250
Alw26I	GTCTC	1 cut(s)	106
AlwI	GGATC	1 cut(s)	292
Aor13HI	TCCGGA	1 cut(s)	361
AoxI	GGCC	1 cut(s)	42
AspS9I	GGNCC	1 cut(s)	43
AsuHPI	GGTGA	4 cut(s)	19, 91, 293, 307
BccI	CCATC	2 cut(s)	411, 469
BcgI	CGANNNNNNTGC	2 cut(s)	295, 329
BciT130I	CCWGG	1 cut(s)	414
BclI	TGATCA	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	3 cut(s)	317, 329, 514
BfmI	CTRYAG	2 cut(s)	124, 447
BisI	GCNGC	2 cut(s)	341, 471
BlsI	GCNGC	2 cut(s)	342, 472
Bme1390I	CCNGG	1 cut(s)	414
BmgT120I	GGNCC	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	360
BmrFI	CCNGG	1 cut(s)	414
BmsI	GCATC	1 cut(s)	388
BsaBI	GATNNNNATC	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	227
BsaI	GGTCTC	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	116
BsaWI	WCCGGW	1 cut(s)	361
Bse118I	RCCGGY	1 cut(s)	463
Bse3DI	GCAATG	1 cut(s)	442
Bse8I	GATNNNNATC	1 cut(s)	219
BseAI	TCCGGA	1 cut(s)	361
BseBI	CCWGG	1 cut(s)	414
BseDI	CCNNGG	1 cut(s)	116
BseGI	GGATG	2 cut(s)	220, 422
BseJI	GATNNNNATC	1 cut(s)	219
BseMI	GCAATG	1 cut(s)	442
BseYI	CCCAGC	1 cut(s)	301
BshFI	GGCC	1 cut(s)	44
BsiSI	CCGG	3 cut(s)	224, 362, 464
BslFI	GGGAC	3 cut(s)	134, 167, 334
BsmAI	GTCTC	1 cut(s)	106
BsmFI	GGGAC	3 cut(s)	134, 167, 334
BsmI	GAATGC	1 cut(s)	409
BsnI	GGCC	1 cut(s)	44
Bso31I	GGTCTC	1 cut(s)	106
Bsp13I	TCCGGA	1 cut(s)	361
Bsp143I	GATC	3 cut(s)	25, 214, 297
BspACI	CCGC	3 cut(s)	340, 470, 491
BspANI	GGCC	1 cut(s)	44
BspEI	TCCGGA	1 cut(s)	361
BspLI	GGNNCC	1 cut(s)	360
BspPI	GGATC	1 cut(s)	292
BspQI	GCTCTTC	1 cut(s)	474
BspTNI	GGTCTC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	442
BsrFI	RCCGGY	1 cut(s)	463
BssAI	RCCGGY	1 cut(s)	463
BssECI	CCNNGG	1 cut(s)	116
BssMI	GATC	3 cut(s)	25, 214, 297
BssNI	GRCGYC	1 cut(s)	227
BssT1I	CCWWGG	1 cut(s)	116
Bst2UI	CCWGG	1 cut(s)	414
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	474
BstACI	GRCGYC	1 cut(s)	227
BstAPI	GCANNNNNTGC	1 cut(s)	349
BstF5I	GGATG	2 cut(s)	220, 422
BstKTI	GATC	3 cut(s)	28, 217, 300
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	3 cut(s)	25, 214, 297
BstMWI	GCNNNNNNNGC	3 cut(s)	174, 247, 349
BstNI	CCWGG	1 cut(s)	414
BstSCI	CCNGG	1 cut(s)	412
BstSFI	CTRYAG	2 cut(s)	124, 447
BsuRI	GGCC	1 cut(s)	44
BtgZI	GCGATG	2 cut(s)	320, 488
BtsCI	GGATG	2 cut(s)	220, 422
Cfr10I	RCCGGY	1 cut(s)	463
Cfr13I	GGNCC	1 cut(s)	43
CseI	GACGC	1 cut(s)	216
CviAII	CATG	2 cut(s)	107, 204
CviJI	RGCY	6 cut(s)	44, 163, 250, 328, 463, 484
CviKI_1	RGCY	6 cut(s)	44, 163, 250, 328, 463, 484
DpnI	GATC	3 cut(s)	27, 216, 299
DpnII	GATC	3 cut(s)	25, 214, 297
Eam1104I	CTCTTC	1 cut(s)	474
EarI	CTCTTC	1 cut(s)	474
Eco130I	CCWWGG	1 cut(s)	116
Eco31I	GGTCTC	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	412
EcoT14I	CCWWGG	1 cut(s)	116
ErhI	CCWWGG	1 cut(s)	116
FaeI	CATG	2 cut(s)	110, 207
FaiI	YATR	6 cut(s)	108, 205, 236, 293, 449, 499
FalI	AAGNNNNNCTT	2 cut(s)	15, 47
FaqI	GGGAC	3 cut(s)	134, 167, 334
FatI	CATG	2 cut(s)	106, 203
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	2 cut(s)	341, 471
FokI	GGATG	2 cut(s)	207, 429
Fsp4HI	GCNGC	2 cut(s)	341, 471
FspBI	CTAG	3 cut(s)	317, 329, 514
GluI	GCNGC	2 cut(s)	341, 471
GsaI	CCCAGC	1 cut(s)	305
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	3 cut(s)	224, 362, 464
HgaI	GACGC	1 cut(s)	216
Hin1I	GRCGYC	1 cut(s)	227
Hin1II	CATG	2 cut(s)	110, 207
HincII	GTYRAC	1 cut(s)	369
HindII	GTYRAC	1 cut(s)	369
HinfI	GANTC	3 cut(s)	180, 365, 422
HpaII	CCGG	3 cut(s)	224, 362, 464
HphI	GGTGA	4 cut(s)	19, 91, 293, 307
Hpy166II	GTNNAC	2 cut(s)	231, 369
Hpy188I	TCNGA	2 cut(s)	157, 247
Hpy188III	TCNNGA	1 cut(s)	362
Hpy8I	GTNNAC	2 cut(s)	231, 369
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4V	TGCA	3 cut(s)	93, 352, 407
HpyF10VI	GCNNNNNNNGC	3 cut(s)	174, 247, 349
Hsp92I	GRCGYC	1 cut(s)	227
Hsp92II	CATG	2 cut(s)	110, 207
Kpn2I	TCCGGA	1 cut(s)	361
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	3 cut(s)	25, 214, 297
LguI	GCTCTTC	1 cut(s)	474
LmnI	GCTCC	2 cut(s)	238, 247
LpnPI	CCDG	6 cut(s)	237, 315, 375, 399, 426, 477
LweI	GCATC	1 cut(s)	388
MaeI	CTAG	3 cut(s)	317, 329, 514
MalI	GATC	3 cut(s)	27, 216, 299
MboI	GATC	3 cut(s)	25, 214, 297
MboII	GAAGA	1 cut(s)	491
MluCI	AATT	1 cut(s)	408
MlyI	GAGTC	2 cut(s)	189, 374
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	5 cut(s)	51, 122, 263, 318, 372
MroI	TCCGGA	1 cut(s)	361
MseI	TTAA	2 cut(s)	69, 198
MspI	CCGG	3 cut(s)	224, 362, 464
MspR9I	CCNGG	1 cut(s)	414
Mva1269I	GAATGC	1 cut(s)	409
MvaI	CCWGG	1 cut(s)	414
MwoI	GCNNNNNNNGC	3 cut(s)	174, 247, 349
NdeII	GATC	3 cut(s)	25, 214, 297
NlaIII	CATG	2 cut(s)	110, 207
NlaIV	GGNNCC	1 cut(s)	360
PciSI	GCTCTTC	1 cut(s)	474
PctI	GAATGC	1 cut(s)	409
PfeI	GAWTC	1 cut(s)	422
PfoI	TCCNGGA	1 cut(s)	412
PkrI	GCNGC	2 cut(s)	342, 472
PleI	GAGTC	2 cut(s)	188, 373
PpsI	GAGTC	2 cut(s)	188, 373
Psp6I	CCWGG	1 cut(s)	412
PspFI	CCCAGC	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	412
PspN4I	GGNNCC	1 cut(s)	360
PspPI	GGNCC	1 cut(s)	43
SapI	GCTCTTC	1 cut(s)	474
SaqAI	TTAA	2 cut(s)	69, 198
SatI	GCNGC	2 cut(s)	341, 471
Sau3AI	GATC	3 cut(s)	25, 214, 297
Sau96I	GGNCC	1 cut(s)	43
SchI	GAGTC	2 cut(s)	189, 374
ScrFI	CCNGG	1 cut(s)	414
SfaNI	GCATC	1 cut(s)	388
SfcI	CTRYAG	2 cut(s)	124, 447
Sse9I	AATT	1 cut(s)	408
SsiI	CCGC	3 cut(s)	340, 470, 491
SspMI	CTAG	3 cut(s)	317, 329, 514
StyD4I	CCNGG	1 cut(s)	412
StyI	CCWWGG	1 cut(s)	116
TaaI	ACNGT	1 cut(s)	100
TaqI	TCGA	1 cut(s)	28
TasI	AATT	1 cut(s)	408
TauI	GCSGC	2 cut(s)	343, 473
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	2 cut(s)	69, 198
Tru9I	TTAA	2 cut(s)	69, 198
TspDTI	ATGAA	2 cut(s)	95, 179
XspI	CTAG	3 cut(s)	317, 329, 514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.