Rroxscaffold_5G00343050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0015769
Physical Location & Seq
Forward (+)
12243883 .. 12253819
9937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00343050.1

Sequence Viewer

Length: 366 bp
ATGATGAGGTTATTCTCAATGGCAGATGCGAATGCAATTCCAAGATGGGATTCGGTGATTGGAAATGCGTCACCTATAAAGATTGTGAAGCCGGTGGCGGCGATGGAAAAGCCAAAGGGGGTGCTATGTCTTTCAAAGAAAACGAGGATAGCAGTTGCTCCTTCAGTCCATGCCACCATGAGCACATCCTTGAAGCCTCCTTGCATTCTTGGAGCTTTGAAGACCTGCTGCCATGGCTTCCCTTCACCAGACTTCATTAAAACTTTCGTGGGTAGGCACGAGCATGACCCGTTTATTGACCCGGCACGAGCACAGCCCGACACAATATGGGCTCGGGCCATGGGCCGGACAGAGCTTAATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.18

Weight (kDa)

9.64

Isoelectric Point (pI)

34.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 233
AciI CCGC 1 cut(s) 98
AcuI CTGAAG 1 cut(s) 147
AfiI CCNNNNNNNGG 1 cut(s) 345
AgsI TTSAA 3 cut(s) 135, 193, 220
AjuI GAANNNNNNNTTGG 2 cut(s) 34, 66
AluBI AGCT 2 cut(s) 215, 355
AluI AGCT 2 cut(s) 215, 355
Alw21I GWGCWC 2 cut(s) 185, 313
Ama87I CYCGRG 1 cut(s) 333
AoxI GGCC 2 cut(s) 336, 343
ApeKI GCWGC 1 cut(s) 228
AspS9I GGNCC 2 cut(s) 336, 343
AsuC2I CCSGG 1 cut(s) 302
AsuHPI GGTGA 3 cut(s) 63, 67, 237
AvaI CYCGRG 1 cut(s) 333
BanII GRGCYC 1 cut(s) 334
BauI CACGAG 2 cut(s) 278, 306
BbsI GAAGAC 1 cut(s) 227
Bbv12I GWGCWC 2 cut(s) 185, 313
BbvI GCAGC 1 cut(s) 215
BccI CCATC 2 cut(s) 39, 97
BcnI CCSGG 1 cut(s) 302
BfuAI ACCTGC 1 cut(s) 233
BisI GCNGC 2 cut(s) 99, 229
BlsI GCNGC 2 cut(s) 100, 230
Bme1390I CCNGG 1 cut(s) 302
BmeT110I CYCGRG 1 cut(s) 333
BmgT120I GGNCC 2 cut(s) 336, 343
BmrFI CCNGG 1 cut(s) 302
BmsI GCATC 1 cut(s) 16
BpiI GAAGAC 1 cut(s) 227
BpuMI CCSGG 1 cut(s) 302
BsaJI CCNNGG 2 cut(s) 232, 339
Bsc4I CCNNNNNNNGG 1 cut(s) 345
Bse118I RCCGGY 1 cut(s) 91
BseDI CCNNGG 2 cut(s) 232, 339
BseGI GGATG 1 cut(s) 185
BseLI CCNNNNNNNGG 1 cut(s) 345
BseXI GCAGC 1 cut(s) 215
BshFI GGCC 2 cut(s) 338, 345
BsiHKAI GWGCWC 2 cut(s) 185, 313
BsiHKCI CYCGRG 1 cut(s) 333
BsiSI CCGG 3 cut(s) 92, 302, 346
BslI CCNNNNNNNGG 1 cut(s) 345
BsmI GAATGC 2 cut(s) 37, 204
BsnI GGCC 2 cut(s) 338, 345
BsoBI CYCGRG 1 cut(s) 333
Bsp1286I GDGCHC 3 cut(s) 185, 313, 334
Bsp19I CCATGG 2 cut(s) 232, 339
BspACI CCGC 1 cut(s) 98
BspANI GGCC 2 cut(s) 338, 345
BspMI ACCTGC 1 cut(s) 233
BsrFI RCCGGY 1 cut(s) 91
BssAI RCCGGY 1 cut(s) 91
BssECI CCNNGG 2 cut(s) 232, 339
BssSI CACGAG 2 cut(s) 278, 306
BssT1I CCWWGG 2 cut(s) 232, 339
Bst2BI CACGAG 2 cut(s) 278, 306
BstDSI CCRYGG 2 cut(s) 232, 339
BstF5I GGATG 1 cut(s) 185
BstMWI GCNNNNNNNGC 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 215
BstV2I GAAGAC 1 cut(s) 227
BsuRI GGCC 2 cut(s) 338, 345
BtgI CCRYGG 2 cut(s) 232, 339
BtgZI GCGATG 1 cut(s) 116
BtsCI GGATG 1 cut(s) 185
BveI ACCTGC 1 cut(s) 233
Cfr10I RCCGGY 1 cut(s) 91
Cfr13I GGNCC 2 cut(s) 336, 343
CseI GACGC 1 cut(s) 57
CviAII CATG 5 cut(s) 170, 178, 233, 284, 340
Eco130I CCWWGG 2 cut(s) 232, 339
Eco24I GRGCYC 1 cut(s) 334
Eco57I CTGAAG 1 cut(s) 147
Eco88I CYCGRG 1 cut(s) 333
EcoT14I CCWWGG 2 cut(s) 232, 339
EcoT38I GRGCYC 1 cut(s) 334
ErhI CCWWGG 2 cut(s) 232, 339
FaeI CATG 5 cut(s) 173, 181, 236, 287, 343
FaiI YATR 8 cut(s) 77, 127, 171, 179, 234, 285, 328, 341
FatI CATG 5 cut(s) 169, 177, 232, 283, 339
Fnu4HI GCNGC 2 cut(s) 99, 229
FokI GGATG 1 cut(s) 172
FriOI GRGCYC 1 cut(s) 334
Fsp4HI GCNGC 2 cut(s) 99, 229
GluI GCNGC 2 cut(s) 99, 229
HaeIII GGCC 2 cut(s) 338, 345
HapII CCGG 3 cut(s) 92, 302, 346
HgaI GACGC 1 cut(s) 57
Hin1II CATG 5 cut(s) 173, 181, 236, 287, 343
HinfI GANTC 1 cut(s) 50
HpaII CCGG 3 cut(s) 92, 302, 346
HphI GGTGA 3 cut(s) 63, 67, 237
HpyAV CCTTC 2 cut(s) 171, 252
HpyCH4V TGCA 2 cut(s) 35, 204
HpyF10VI GCNNNNNNNGC 1 cut(s) 234
Hsp92II CATG 5 cut(s) 173, 181, 236, 287, 343
LmnI GCTCC 2 cut(s) 163, 212
LpnPI CCDG 5 cut(s) 105, 238, 261, 315, 359
Lsp1109I GCAGC 1 cut(s) 215
LweI GCATC 1 cut(s) 16
MaeIII GTNAC 1 cut(s) 69
MboII GAAGA 1 cut(s) 232
MhlI GDGCHC 3 cut(s) 185, 313, 334
MluCI AATT 1 cut(s) 36
MnlI CCTC 2 cut(s) 138, 207
MseI TTAA 3 cut(s) 258, 357, 364
MslI CAYNNNNRTG 1 cut(s) 282
MspI CCGG 3 cut(s) 92, 302, 346
MspR9I CCNGG 1 cut(s) 302
Mva1269I GAATGC 2 cut(s) 37, 204
MwoI GCNNNNNNNGC 1 cut(s) 234
NciI CCSGG 1 cut(s) 302
NcoI CCATGG 2 cut(s) 232, 339
NlaIII CATG 5 cut(s) 173, 181, 236, 287, 343
NmuCI GTSAC 1 cut(s) 69
PctI GAATGC 2 cut(s) 37, 204
PfeI GAWTC 1 cut(s) 50
PkrI GCNGC 2 cut(s) 100, 230
PspPI GGNCC 2 cut(s) 336, 343
RseI CAYNNNNRTG 1 cut(s) 282
SaqAI TTAA 3 cut(s) 258, 357, 364
SatI GCNGC 2 cut(s) 99, 229
Sau96I GGNCC 2 cut(s) 336, 343
ScrFI CCNGG 1 cut(s) 302
SduI GDGCHC 3 cut(s) 185, 313, 334
SetI ASST 5 cut(s) 11, 76, 217, 227, 357
SfaNI GCATC 1 cut(s) 16
SmiMI CAYNNNNRTG 1 cut(s) 282
Sse9I AATT 1 cut(s) 36
SsiI CCGC 1 cut(s) 98
StyD4I CCNGG 1 cut(s) 300
StyI CCWWGG 2 cut(s) 232, 339
TasI AATT 1 cut(s) 36
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 3 cut(s) 258, 357, 364
Tru9I TTAA 3 cut(s) 258, 357, 364
TseFI GTSAC 1 cut(s) 69
TseI GCWGC 1 cut(s) 228
Tsp45I GTSAC 1 cut(s) 69
TspDTI ATGAA 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.