Rroxscaffold_4G00329080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0015769
Physical Location & Seq
Reverse (-)
62282721 .. 62288815
6095 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00329080.1

Sequence Viewer

Length: 420 bp
ATGGACAAACTGAATTTGTCCAATCTGAACCGTGCTAACTTTAAGGCAAGATGCGTTATCACCCTCAATGTCAATGCATTGCCGTCCTTTTGCTTGGCAAACAACACTCGTCTCAATGCAAGAGCTCCACGTGAATTGCAGAGGAAACTCCACTTACAATCTTACATATTTGCTGAAGCTAGGCACCTAAACAATAGCCGTCTGCGTCACGCATTACTCGACCTATTCCCCATTTCCACAGCCCTCCACAAAGGACCCAATTGGCTTCACCGAGCTTCACCTCCTACTTTGTCGGGGAATTGTCGTGAAGCCCGGTCTAAATTGGTTAGGGTTGTCAAGAAGCCTATGTTGGGGAAGGGAGTTGTCTTGGGCCCCTTGACCTTTGAACGGGCTTCGATCTTCCAAATACTAACGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.73

Weight (kDa)

11.59

Isoelectric Point (pI)

31.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 183
AcsI RAATTY 1 cut(s) 13
AcuI CTGAAG 1 cut(s) 195
AcvI CACGTG 1 cut(s) 131
AfiI CCNNNNNNNGG 2 cut(s) 350, 387
AgsI TTSAA 1 cut(s) 386
AjuI GAANNNNNNNTTGG 2 cut(s) 332, 364
AluBI AGCT 3 cut(s) 125, 179, 275
AluI AGCT 3 cut(s) 125, 179, 275
Alw21I GWGCWC 1 cut(s) 127
Alw26I GTCTC 1 cut(s) 116
AoxI GGCC 1 cut(s) 370
ApaI GGGCCC 1 cut(s) 374
ApoI RAATTY 1 cut(s) 13
AspS9I GGNCC 3 cut(s) 254, 370, 371
AsuC2I CCSGG 1 cut(s) 313
AsuHPI GGTGA 3 cut(s) 52, 260, 270
AvaII GGWCC 1 cut(s) 254
BaeGI GKGCMC 1 cut(s) 374
BanI GGYRCC 1 cut(s) 183
BanII GRGCYC 2 cut(s) 127, 374
BbrPI CACGTG 1 cut(s) 131
Bbv12I GWGCWC 1 cut(s) 127
BceAI ACGGC 2 cut(s) 67, 183
BcnI CCSGG 1 cut(s) 313
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 1 cut(s) 180
Bme1390I CCNGG 1 cut(s) 313
Bme18I GGWCC 1 cut(s) 254
BmgT120I GGNCC 3 cut(s) 254, 370, 371
BmiI GGNNCC 4 cut(s) 185, 256, 372, 373
BmrFI CCNGG 1 cut(s) 313
BmsI GCATC 1 cut(s) 41
BpuMI CCSGG 1 cut(s) 313
BsaAI YACGTR 1 cut(s) 131
Bsc4I CCNNNNNNNGG 2 cut(s) 350, 387
Bse3DI GCAATG 1 cut(s) 77
BseLI CCNNNNNNNGG 2 cut(s) 350, 387
BseMI GCAATG 1 cut(s) 77
BseSI GKGCMC 1 cut(s) 374
BshFI GGCC 1 cut(s) 372
BshNI GGYRCC 1 cut(s) 183
BsiHKAI GWGCWC 1 cut(s) 127
BsiSI CCGG 1 cut(s) 313
BslI CCNNNNNNNGG 2 cut(s) 350, 387
BsmAI GTCTC 1 cut(s) 116
BsmBI CGTCTC 1 cut(s) 116
BsnI GGCC 1 cut(s) 372
Bsp120I GGGCCC 1 cut(s) 370
Bsp1286I GDGCHC 2 cut(s) 127, 374
Bsp143I GATC 1 cut(s) 396
BspANI GGCC 1 cut(s) 372
BspLI GGNNCC 4 cut(s) 185, 256, 372, 373
BspT107I GGYRCC 1 cut(s) 183
BsrDI GCAATG 1 cut(s) 77
BssMI GATC 1 cut(s) 396
Bst4CI ACNGT 1 cut(s) 32
BstBAI YACGTR 1 cut(s) 131
BstKTI GATC 1 cut(s) 399
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 1 cut(s) 396
BstSCI CCNGG 1 cut(s) 311
BstSLI GKGCMC 1 cut(s) 374
BsuRI GGCC 1 cut(s) 372
Cfr13I GGNCC 3 cut(s) 254, 370, 371
CseI GACGC 1 cut(s) 194
CspCI CAANNNNNGTGG 2 cut(s) 117, 152
DpnI GATC 1 cut(s) 398
DpnII GATC 1 cut(s) 396
Ecl136II GAGCTC 1 cut(s) 125
Eco24I GRGCYC 2 cut(s) 127, 374
Eco47I GGWCC 1 cut(s) 254
Eco53kI GAGCTC 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 195
Eco72I CACGTG 1 cut(s) 131
EcoICRI GAGCTC 1 cut(s) 125
EcoO109I RGGNCCY 2 cut(s) 254, 371
EcoT22I ATGCAT 1 cut(s) 79
EcoT38I GRGCYC 2 cut(s) 127, 374
Esp3I CGTCTC 1 cut(s) 116
FaiI YATR 2 cut(s) 167, 347
FriOI GRGCYC 2 cut(s) 127, 374
FspBI CTAG 1 cut(s) 180
HaeIII GGCC 1 cut(s) 372
HapII CCGG 1 cut(s) 313
HgaI GACGC 1 cut(s) 194
HpaII CCGG 1 cut(s) 313
HphI GGTGA 3 cut(s) 52, 260, 270
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 2 cut(s) 305, 337
HpyAV CCTTC 1 cut(s) 349
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4IV ACGT 1 cut(s) 130
HpyCH4V TGCA 3 cut(s) 77, 119, 139
HpySE526I ACGT 1 cut(s) 130
Kzo9I GATC 1 cut(s) 396
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 1 cut(s) 326
LweI GCATC 1 cut(s) 41
MaeI CTAG 1 cut(s) 180
MaeII ACGT 1 cut(s) 130
MaeIII GTNAC 1 cut(s) 206
MalI GATC 1 cut(s) 398
MboI GATC 1 cut(s) 396
MboII GAAGA 1 cut(s) 391
MfeI CAATTG 1 cut(s) 259
MhlI GDGCHC 2 cut(s) 127, 374
MluCI AATT 5 cut(s) 13, 134, 259, 298, 320
MnlI CCTC 5 cut(s) 74, 135, 254, 291, 408
Mph1103I ATGCAT 1 cut(s) 79
MseI TTAA 1 cut(s) 42
MspI CCGG 1 cut(s) 313
MspR9I CCNGG 1 cut(s) 313
MunI CAATTG 1 cut(s) 259
NciI CCSGG 1 cut(s) 313
NdeII GATC 1 cut(s) 396
NlaIV GGNNCC 4 cut(s) 185, 256, 372, 373
NmuCI GTSAC 1 cut(s) 206
NsiI ATGCAT 1 cut(s) 79
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PmaCI CACGTG 1 cut(s) 131
PmlI CACGTG 1 cut(s) 131
Ppu21I YACGTR 1 cut(s) 131
PpuMI RGGWCCY 1 cut(s) 254
Psp124BI GAGCTC 1 cut(s) 127
Psp5II RGGWCCY 1 cut(s) 254
PspCI CACGTG 1 cut(s) 131
PspN4I GGNNCC 4 cut(s) 185, 256, 372, 373
PspOMI GGGCCC 1 cut(s) 370
PspPI GGNCC 3 cut(s) 254, 370, 371
PspPPI RGGWCCY 1 cut(s) 254
SacI GAGCTC 1 cut(s) 127
SaqAI TTAA 1 cut(s) 42
Sau3AI GATC 1 cut(s) 396
Sau96I GGNCC 3 cut(s) 254, 370, 371
ScrFI CCNGG 1 cut(s) 313
SduI GDGCHC 2 cut(s) 127, 374
SetI ASST 9 cut(s) 127, 133, 181, 189, 225, 277, 283, 383, 419
SfaNI GCATC 1 cut(s) 41
SinI GGWCC 1 cut(s) 254
Sse9I AATT 5 cut(s) 13, 134, 259, 298, 320
SspMI CTAG 1 cut(s) 180
SstI GAGCTC 1 cut(s) 127
StyD4I CCNGG 1 cut(s) 311
TaaI ACNGT 1 cut(s) 32
TaiI ACGT 1 cut(s) 133
TaqI TCGA 2 cut(s) 219, 395
TasI AATT 5 cut(s) 13, 134, 259, 298, 320
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TseFI GTSAC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 206
VpaK11BI GGWCC 1 cut(s) 254
XapI RAATTY 1 cut(s) 13
XspI CTAG 1 cut(s) 180
Zsp2I ATGCAT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.