Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0015769

Physical Location & Seq

Genomic Coordinates Forward (+)

44227543 .. 44228883

Gene Structure 1341 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013915

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCGGAGGAGATGGCAGCACGTTTGTCAGCAGCGTTGGCGTTAACGGAGGCAGCAGTGGTGGATTTTGGTTCTCTGGGTTCGACAACGGTGGCAGAGGATGGATACTATCTGAGAGAGAAGCCAGTTCCGGCGGTGGCACTGGCATTGGCGGCACCGTGCTTAGGGGCGTTGTCCTCTGGTTTGCGTGGTAATGGGTCATCGGCCTCTCAGGGCAAGGAGAAACAGATCTTGGAAGTTGTAACAAGGGTTGCGAACCCTAACGGAGACAAGATGAAAGTGCAGAGTAGGCCCATGCTGGGGGGTCTAGCTTTGAGTCTTTTGTTTAAGACTGCTGACTTGGAAGCTATCCCAAGTTGGACTTATGTGGCTAAGCTGGAAGAAGGAGTTGTCTCGGAGCCATTGACCTTTGAACCGGGCTTCGAACTTCCAAATACTAATGGGGTGATCTACCTATCCCCAAAGAAGCGGCGACGGCCCAAAGGTAGCAGAAATTTAGCAAAGGCTGGGCTAGGGTTGCCAAAACCTAAAAAGAAGAGGTTTCCCAAGACGACTGGGGAATCCAAGGAGATGGAGGTGGGGGTGAGTTCATCTTCCTCAGAGCCAGTGTATGAGAAGGCTATTGGGTTCGCGGTTGGAGAAACAGTGGATGGGGCCAATCCTCCGGCATTGGCATCAGGTGCAAATACAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

232

Amino Acids

24.09

Weight (kDa)

9.08

Isoelectric Point (pI)

43.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015769)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007775 RLG00000013915 RLG00000013916 RLG00000016936 RLG00000019193 RLG00000030532 RLG00000033599 RLG00000034539
rosa_multiflora	Rmu_sc0002378.1_g000019
rosa_roxburghii	Rroxscaffold_3G00219960 Rroxscaffold_4G00329080 Rroxscaffold_5G00343050
rosa_rugosa	Rorug02G0085600
rosa_samantha	Rh6AG180100 Rh6BG163900 Rh7AG490700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	154
AccII	CGCG	1 cut(s)	632
AciI	CCGC	5 cut(s)	5, 134, 152, 469, 632
AcsI	RAATTY	1 cut(s)	493
AfiI	CCNNNNNNNGG	3 cut(s)	164, 299, 300
AgsI	TTSAA	1 cut(s)	413
AjuI	GAANNNNNNNTTGG	2 cut(s)	215, 247
AluBI	AGCT	3 cut(s)	311, 347, 376
AluI	AGCT	3 cut(s)	311, 347, 376
Alw26I	GTCTC	2 cut(s)	261, 397
AoxI	GGCC	4 cut(s)	204, 290, 476, 654
ApeKI	GCWGC	3 cut(s)	17, 32, 53
ApoI	RAATTY	1 cut(s)	493
AspS9I	GGNCC	3 cut(s)	291, 477, 654
AsuC2I	CCSGG	1 cut(s)	417
AsuHPI	GGTGA	2 cut(s)	457, 595
AsuII	TTCGAA	1 cut(s)	423
BanI	GGYRCC	1 cut(s)	154
BbvI	GCAGC	3 cut(s)	29, 44, 65
BccI	CCATC	4 cut(s)	7, 95, 565, 644
BceAI	ACGGC	1 cut(s)	491
BciVI	GTATCC	1 cut(s)	98
BcnI	CCSGG	1 cut(s)	417
BcoDI	GTCTC	2 cut(s)	261, 397
BfaI	CTAG	2 cut(s)	308, 512
BfuI	GTATCC	1 cut(s)	98
BglII	AGATCT	1 cut(s)	228
BisI	GCNGC	5 cut(s)	18, 33, 54, 153, 470
BlpI	GCTNAGC	1 cut(s)	372
BlsI	GCNGC	5 cut(s)	19, 34, 55, 154, 471
Bme1390I	CCNGG	1 cut(s)	417
BmgT120I	GGNCC	3 cut(s)	291, 477, 654
BmiI	GGNNCC	3 cut(s)	156, 399, 655
BmrFI	CCNGG	1 cut(s)	417
BmrI	ACTGGG	1 cut(s)	564
BmsI	GCATC	1 cut(s)	683
BmuI	ACTGGG	1 cut(s)	564
Bpu10I	CCTNAGC	1 cut(s)	163
Bpu1102I	GCTNAGC	1 cut(s)	372
Bpu14I	TTCGAA	1 cut(s)	423
BpuMI	CCSGG	1 cut(s)	417
BsaJI	CCNNGG	1 cut(s)	564
BsaXI	ACNNNNNCTCC	2 cut(s)	630, 660
Bsc4I	CCNNNNNNNGG	3 cut(s)	164, 299, 300
Bse1I	ACTGG	4 cut(s)	125, 147, 559, 605
BseDI	CCNNGG	1 cut(s)	564
BseGI	GGATG	2 cut(s)	106, 655
BseLI	CCNNNNNNNGG	3 cut(s)	164, 299, 300
BseMII	CTCAG	3 cut(s)	104, 224, 612
BseNI	ACTGG	4 cut(s)	125, 147, 559, 605
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	3 cut(s)	29, 44, 65
BseYI	CCCAGC	2 cut(s)	298, 506
BsgI	GTGCAG	1 cut(s)	302
Bsh1236I	CGCG	1 cut(s)	632
BshFI	GGCC	4 cut(s)	206, 292, 478, 656
BshNI	GGYRCC	1 cut(s)	154
BsiSI	CCGG	3 cut(s)	131, 416, 665
BslI	CCNNNNNNNGG	3 cut(s)	164, 299, 300
BsmAI	GTCTC	2 cut(s)	261, 397
BsnI	GGCC	4 cut(s)	206, 292, 478, 656
Bsp119I	TTCGAA	1 cut(s)	423
Bsp143I	GATC	2 cut(s)	228, 447
Bsp1720I	GCTNAGC	1 cut(s)	372
BspACI	CCGC	5 cut(s)	5, 134, 152, 469, 632
BspANI	GGCC	4 cut(s)	206, 292, 478, 656
BspCNI	CTCAG	3 cut(s)	105, 223, 611
BspFNI	CGCG	1 cut(s)	632
BspLI	GGNNCC	3 cut(s)	156, 399, 655
BspT104I	TTCGAA	1 cut(s)	423
BspT107I	GGYRCC	1 cut(s)	154
BsrI	ACTGG	4 cut(s)	125, 147, 559, 605
BssECI	CCNNGG	1 cut(s)	564
BssMI	GATC	2 cut(s)	228, 447
BssT1I	CCWWGG	1 cut(s)	564
Bst4CI	ACNGT	4 cut(s)	91, 159, 646, 691
Bst6I	CTCTTC	1 cut(s)	530
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstBI	TTCGAA	1 cut(s)	423
BstDEI	CTNAG	5 cut(s)	113, 163, 210, 372, 598
BstF5I	GGATG	2 cut(s)	106, 655
BstFNI	CGCG	1 cut(s)	632
BstKTI	GATC	2 cut(s)	231, 450
BstMAI	GTCTC	2 cut(s)	261, 397
BstMBI	GATC	2 cut(s)	228, 447
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 152, 289, 475, 517, 680
BstSCI	CCNGG	1 cut(s)	415
BstUI	CGCG	1 cut(s)	632
BstV1I	GCAGC	3 cut(s)	29, 44, 65
BstX2I	RGATCY	1 cut(s)	228
BstXI	CCANNNNNNTGG	1 cut(s)	571
BstYI	RGATCY	1 cut(s)	228
BsuI	GTATCC	1 cut(s)	98
BsuRI	GGCC	4 cut(s)	206, 292, 478, 656
BtsCI	GGATG	2 cut(s)	106, 655
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	4 cut(s)	63, 140, 612, 651
Cfr13I	GGNCC	3 cut(s)	291, 477, 654
CviAII	CATG	1 cut(s)	295
DdeI	CTNAG	5 cut(s)	113, 163, 210, 372, 598
DpnI	GATC	2 cut(s)	230, 449
DpnII	GATC	2 cut(s)	228, 447
Eam1104I	CTCTTC	1 cut(s)	530
EarI	CTCTTC	1 cut(s)	530
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	564
EcoT14I	CCWWGG	1 cut(s)	564
ErhI	CCWWGG	1 cut(s)	564
FaeI	CATG	1 cut(s)	298
FaiI	YATR	3 cut(s)	296, 366, 612
FalI	AAGNNNNNCTT	2 cut(s)	346, 378
FatI	CATG	1 cut(s)	294
Fnu4HI	GCNGC	5 cut(s)	18, 33, 54, 153, 470
FokI	GGATG	2 cut(s)	113, 662
Fsp4HI	GCNGC	5 cut(s)	18, 33, 54, 153, 470
FspBI	CTAG	2 cut(s)	308, 512
GluI	GCNGC	5 cut(s)	18, 33, 54, 153, 470
GsaI	CCCAGC	2 cut(s)	302, 510
HaeIII	GGCC	4 cut(s)	206, 292, 478, 656
HapII	CCGG	3 cut(s)	131, 416, 665
Hin1II	CATG	1 cut(s)	298
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HinfI	GANTC	2 cut(s)	316, 560
HpaI	GTTAAC	1 cut(s)	45
HpaII	CCGG	3 cut(s)	131, 416, 665
HphI	GGTGA	2 cut(s)	457, 595
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188I	TCNGA	3 cut(s)	114, 397, 601
Hpy8I	GTNNAC	1 cut(s)	45
Hpy99I	CGWCG	1 cut(s)	477
HpyAV	CCTTC	2 cut(s)	377, 610
HpyCH4III	ACNGT	4 cut(s)	91, 159, 646, 691
HpyCH4IV	ACGT	1 cut(s)	22
HpyCH4V	TGCA	2 cut(s)	283, 683
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 152, 289, 475, 517, 680
HpyF3I	CTNAG	5 cut(s)	113, 163, 210, 372, 598
HpySE526I	ACGT	1 cut(s)	22
Hsp92II	CATG	1 cut(s)	298
KspAI	GTTAAC	1 cut(s)	45
Kzo9I	GATC	2 cut(s)	228, 447
LmnI	GCTCC	1 cut(s)	397
Lsp1109I	GCAGC	3 cut(s)	29, 44, 65
LweI	GCATC	1 cut(s)	683
MaeI	CTAG	2 cut(s)	308, 512
MaeII	ACGT	1 cut(s)	22
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	2 cut(s)	230, 449
MboI	GATC	2 cut(s)	228, 447
MboII	GAAGA	3 cut(s)	392, 547, 585
MflI	RGATCY	1 cut(s)	228
MluCI	AATT	1 cut(s)	493
MlyI	GAGTC	1 cut(s)	325
MmeI	TCCRAC	2 cut(s)	338, 616
MnlI	CCTC	8 cut(s)	43, 91, 187, 217, 531, 568, 607, 672
MseI	TTAA	2 cut(s)	44, 327
MspI	CCGG	3 cut(s)	131, 416, 665
MspR9I	CCNGG	1 cut(s)	417
MvnI	CGCG	1 cut(s)	632
MwoI	GCNNNNNNNGC	6 cut(s)	38, 152, 289, 475, 517, 680
NciI	CCSGG	1 cut(s)	417
NdeII	GATC	2 cut(s)	228, 447
NlaIII	CATG	1 cut(s)	298
NlaIV	GGNNCC	3 cut(s)	156, 399, 655
NspV	TTCGAA	1 cut(s)	423
PfeI	GAWTC	1 cut(s)	560
PkrI	GCNGC	5 cut(s)	19, 34, 55, 154, 471
PleI	GAGTC	1 cut(s)	324
PpsI	GAGTC	1 cut(s)	324
PspFI	CCCAGC	2 cut(s)	298, 506
PspN4I	GGNNCC	3 cut(s)	156, 399, 655
PspPI	GGNCC	3 cut(s)	291, 477, 654
PsuI	RGATCY	1 cut(s)	228
SaqAI	TTAA	2 cut(s)	44, 327
SatI	GCNGC	5 cut(s)	18, 33, 54, 153, 470
Sau3AI	GATC	2 cut(s)	228, 447
Sau96I	GGNCC	3 cut(s)	291, 477, 654
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	1 cut(s)	417
SfaNI	GCATC	1 cut(s)	683
SfuI	TTCGAA	1 cut(s)	423
Sse9I	AATT	1 cut(s)	493
SsiI	CCGC	5 cut(s)	5, 134, 152, 469, 632
SspMI	CTAG	2 cut(s)	308, 512
StyD4I	CCNGG	1 cut(s)	415
StyI	CCWWGG	1 cut(s)	564
TaaI	ACNGT	4 cut(s)	91, 159, 646, 691
TaiI	ACGT	1 cut(s)	25
TaqI	TCGA	2 cut(s)	83, 423
TasI	AATT	1 cut(s)	493
TauI	GCSGC	2 cut(s)	155, 472
TfiI	GAWTC	1 cut(s)	560
Tru1I	TTAA	2 cut(s)	44, 327
Tru9I	TTAA	2 cut(s)	44, 327
TscAI	CASTG	4 cut(s)	63, 147, 612, 651
TseI	GCWGC	3 cut(s)	17, 32, 53
TspDTI	ATGAA	2 cut(s)	290, 579
TspGWI	ACGGA	2 cut(s)	62, 279
TspRI	CASTG	4 cut(s)	63, 147, 612, 651
XapI	RAATTY	1 cut(s)	493
XspI	CTAG	2 cut(s)	308, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.