Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0015769

Physical Location & Seq

Genomic Coordinates Reverse (-)

63079140 .. 63080505

Gene Structure 1366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030532

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCAGCACGTGTGTCAGCAGCACTGGCTTTAACGGAGGCAGCAGTGGTGGATTTTGGATCGTTGGGTCGAAAGCGGTGGTGGAGGATGGATACTATCTGGGTTGGCAAGAAGGCTAAGCTGGGGAAGGGAGTTGTCTTGGGCCCATTGACCTTTGAACTGGGCTTCGATCTTCCAAATACTAACGGGGTGATCTACCTATCCCCAAAGAAGTGGGGACGGCCTAAAGGCAGCAAAAATTTAGCAAAGGCTGGGGTAGGGATGCCAACGCCTAAAAAGAAGAGGTTTCCCAAGAAGACTGGGGAATCAAAGGACATGGAGGTGGGGGTGAGTTCATCTTCCTCAGAGGTAGTGTATGAGAAGGCCATTGGGTCCAAGGTAGGAGAAACAGTGGATGAGGCCTATGTTCCGGAATTGGCATTAGGAGCCAATAAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

15.62

Weight (kDa)

9.92

Isoelectric Point (pI)

27.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015769)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007775 RLG00000013915 RLG00000013916 RLG00000016936 RLG00000019193 RLG00000030532 RLG00000033599 RLG00000034539
rosa_multiflora	Rmu_sc0002378.1_g000019
rosa_roxburghii	Rroxscaffold_3G00219960 Rroxscaffold_4G00329080 Rroxscaffold_5G00343050
rosa_rugosa	Rorug02G0085600
rosa_samantha	Rh6AG180100 Rh6BG163900 Rh7AG490700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	409
AciI	CCGC	1 cut(s)	76
AclWI	GGATC	1 cut(s)	67
AcsI	RAATTY	1 cut(s)	238
AcvI	CACGTG	1 cut(s)	11
AflIII	ACRYGT	1 cut(s)	10
AgsI	TTSAA	1 cut(s)	158
AluBI	AGCT	1 cut(s)	121
AluI	AGCT	1 cut(s)	121
AlwI	GGATC	1 cut(s)	67
Aor13HI	TCCGGA	1 cut(s)	409
AoxI	GGCC	4 cut(s)	142, 221, 363, 399
ApaI	GGGCCC	1 cut(s)	146
ApeKI	GCWGC	4 cut(s)	5, 20, 41, 231
ApoI	RAATTY	1 cut(s)	238
AspS9I	GGNCC	3 cut(s)	142, 143, 372
AsuHPI	GGTGA	2 cut(s)	202, 340
AvaII	GGWCC	1 cut(s)	372
BaeGI	GKGCMC	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	146
BbrPI	CACGTG	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	302
BbvI	GCAGC	4 cut(s)	17, 32, 53, 243
BccI	CCATC	1 cut(s)	82
BceAI	ACGGC	1 cut(s)	236
BciVI	GTATCC	1 cut(s)	85
BfuI	GTATCC	1 cut(s)	85
BisI	GCNGC	4 cut(s)	6, 21, 42, 232
BlpI	GCTNAGC	1 cut(s)	117
BlsI	GCNGC	4 cut(s)	7, 22, 43, 233
Bme18I	GGWCC	1 cut(s)	372
BmgT120I	GGNCC	3 cut(s)	142, 143, 372
BmiI	GGNNCC	3 cut(s)	144, 373, 427
BmrI	ACTGGG	2 cut(s)	170, 309
BmsI	GCATC	1 cut(s)	252
BmuI	ACTGGG	2 cut(s)	170, 309
BpiI	GAAGAC	1 cut(s)	302
Bpu1102I	GCTNAGC	1 cut(s)	117
BsaAI	YACGTR	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	375
BsaWI	WCCGGW	1 cut(s)	409
BsaXI	ACNNNNNCTCC	2 cut(s)	375, 405
Bse1I	ACTGG	3 cut(s)	30, 165, 304
BseAI	TCCGGA	1 cut(s)	409
BseDI	CCNNGG	1 cut(s)	375
BseGI	GGATG	3 cut(s)	93, 267, 400
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	3 cut(s)	30, 165, 304
BseSI	GKGCMC	1 cut(s)	146
BseXI	GCAGC	4 cut(s)	17, 32, 53, 243
BseYI	CCCAGC	2 cut(s)	121, 251
BshFI	GGCC	4 cut(s)	144, 223, 365, 401
BsiSI	CCGG	1 cut(s)	410
BslFI	GGGAC	1 cut(s)	231
BsmFI	GGGAC	1 cut(s)	231
BsnI	GGCC	4 cut(s)	144, 223, 365, 401
Bsp120I	GGGCCC	1 cut(s)	142
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp13I	TCCGGA	1 cut(s)	409
Bsp143I	GATC	3 cut(s)	59, 169, 192
Bsp1720I	GCTNAGC	1 cut(s)	117
BspACI	CCGC	1 cut(s)	76
BspANI	GGCC	4 cut(s)	144, 223, 365, 401
BspCNI	CTCAG	1 cut(s)	356
BspEI	TCCGGA	1 cut(s)	409
BspLI	GGNNCC	3 cut(s)	144, 373, 427
BspPI	GGATC	1 cut(s)	67
BsrI	ACTGG	3 cut(s)	30, 165, 304
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	3 cut(s)	59, 169, 192
BssT1I	CCWWGG	1 cut(s)	375
Bst4CI	ACNGT	1 cut(s)	391
Bst6I	CTCTTC	1 cut(s)	275
BstBAI	YACGTR	1 cut(s)	11
BstDEI	CTNAG	2 cut(s)	117, 343
BstF5I	GGATG	3 cut(s)	93, 267, 400
BstKTI	GATC	3 cut(s)	62, 172, 195
BstMBI	GATC	3 cut(s)	59, 169, 192
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 425
BstSLI	GKGCMC	1 cut(s)	146
BstV1I	GCAGC	4 cut(s)	17, 32, 53, 243
BstV2I	GAAGAC	1 cut(s)	302
BstXI	CCANNNNNNTGG	1 cut(s)	213
BsuI	GTATCC	1 cut(s)	85
BsuRI	GGCC	4 cut(s)	144, 223, 365, 401
BtsCI	GGATG	3 cut(s)	93, 267, 400
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	3 cut(s)	23, 51, 396
Cfr13I	GGNCC	3 cut(s)	142, 143, 372
CviAII	CATG	1 cut(s)	316
DdeI	CTNAG	2 cut(s)	117, 343
DpnI	GATC	3 cut(s)	61, 171, 194
DpnII	GATC	3 cut(s)	59, 169, 192
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	375
Eco147I	AGGCCT	1 cut(s)	401
Eco24I	GRGCYC	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	372
Eco72I	CACGTG	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	375
EcoT38I	GRGCYC	1 cut(s)	146
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	1 cut(s)	319
FaiI	YATR	3 cut(s)	317, 357, 405
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	1 cut(s)	315
Fnu4HI	GCNGC	4 cut(s)	6, 21, 42, 232
FokI	GGATG	3 cut(s)	100, 274, 407
FriOI	GRGCYC	1 cut(s)	146
Fsp4HI	GCNGC	4 cut(s)	6, 21, 42, 232
GluI	GCNGC	4 cut(s)	6, 21, 42, 232
GsaI	CCCAGC	2 cut(s)	125, 255
HaeIII	GGCC	4 cut(s)	144, 223, 365, 401
HapII	CCGG	1 cut(s)	410
Hin1II	CATG	1 cut(s)	319
HinfI	GANTC	1 cut(s)	305
HpaII	CCGG	1 cut(s)	410
HphI	GGTGA	2 cut(s)	202, 340
Hpy188I	TCNGA	1 cut(s)	346
Hpy188III	TCNNGA	1 cut(s)	410
HpyAV	CCTTC	3 cut(s)	106, 121, 355
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4IV	ACGT	1 cut(s)	10
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 425
HpyF3I	CTNAG	2 cut(s)	117, 343
HpySE526I	ACGT	1 cut(s)	10
Hsp92II	CATG	1 cut(s)	319
Kpn2I	TCCGGA	1 cut(s)	409
Kzo9I	GATC	3 cut(s)	59, 169, 192
LmnI	GCTCC	1 cut(s)	425
LpnPI	CCDG	7 cut(s)	11, 85, 107, 146, 237, 285, 423
Lsp1109I	GCAGC	4 cut(s)	17, 32, 53, 243
LweI	GCATC	1 cut(s)	252
MaeII	ACGT	1 cut(s)	10
MalI	GATC	3 cut(s)	61, 171, 194
MboI	GATC	3 cut(s)	59, 169, 192
MboII	GAAGA	4 cut(s)	164, 292, 307, 330
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	2 cut(s)	238, 413
MnlI	CCTC	7 cut(s)	31, 78, 276, 313, 340, 352, 391
MroI	TCCGGA	1 cut(s)	409
MseI	TTAA	1 cut(s)	32
MslI	CAYNNNNRTG	1 cut(s)	320
MspI	CCGG	1 cut(s)	410
MwoI	GCNNNNNNNGC	2 cut(s)	26, 425
NdeII	GATC	3 cut(s)	59, 169, 192
NlaIII	CATG	1 cut(s)	319
NlaIV	GGNNCC	3 cut(s)	144, 373, 427
PceI	AGGCCT	1 cut(s)	401
PfeI	GAWTC	1 cut(s)	305
PkrI	GCNGC	4 cut(s)	7, 22, 43, 233
PmaCI	CACGTG	1 cut(s)	11
PmlI	CACGTG	1 cut(s)	11
Ppu21I	YACGTR	1 cut(s)	11
PspCI	CACGTG	1 cut(s)	11
PspFI	CCCAGC	2 cut(s)	121, 251
PspN4I	GGNNCC	3 cut(s)	144, 373, 427
PspOMI	GGGCCC	1 cut(s)	142
PspPI	GGNCC	3 cut(s)	142, 143, 372
RseI	CAYNNNNRTG	1 cut(s)	320
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	4 cut(s)	6, 21, 42, 232
Sau3AI	GATC	3 cut(s)	59, 169, 192
Sau96I	GGNCC	3 cut(s)	142, 143, 372
SduI	GDGCHC	1 cut(s)	146
SetI	ASST	9 cut(s)	13, 123, 155, 201, 287, 324, 351, 381, 438
SfaNI	GCATC	1 cut(s)	252
SinI	GGWCC	1 cut(s)	372
SmiMI	CAYNNNNRTG	1 cut(s)	320
Sse9I	AATT	2 cut(s)	238, 413
SseBI	AGGCCT	1 cut(s)	401
SsiI	CCGC	1 cut(s)	76
StuI	AGGCCT	1 cut(s)	401
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	1 cut(s)	391
TaiI	ACGT	1 cut(s)	13
TaqI	TCGA	2 cut(s)	70, 168
TasI	AATT	2 cut(s)	238, 413
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TscAI	CASTG	3 cut(s)	30, 51, 396
TseI	GCWGC	4 cut(s)	5, 20, 41, 231
TspDTI	ATGAA	1 cut(s)	324
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	3 cut(s)	30, 51, 396
VpaK11BI	GGWCC	1 cut(s)	372
XapI	RAATTY	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.