Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0015769

Physical Location & Seq

Genomic Coordinates Reverse (-)

69112877 .. 69114722

Gene Structure 1846 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG490700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCGCTGTTCTTAGACGTCGACGGTATGGAACCCTATATCAGTAGGAAAGATGCTCCACTTATCACAAACATGAGCAAATCACTCCCCTATTTGAGAACAAATAAGTTTATGTGGACCACACGAAAAGGCCAGGATCTCGGCGAAGCGGAGGGCTGTGATAAGTTTCTGATGATCCAGAGAGGAAAGAAAACTCCGAAGGTGGCTCTGGCGGTGGTGGGACCGTGCTTGGGGGCGTCGTCCTCTATTTTGCATGGCAATGGGTCGATGGCGTCTCGGGACAAGGAGAAACCGGTTTCGGAGATGGCTGCAGCAAAGGATTCGAACCCTAACAGAGATAAGATGAAAGGGCAGAGCAGTTCCGAGGTGGGTGGCCCGGGAACAGTGGAACCCTCATCGGTGGTGGTATTGGCCTCACCTCCCAAACTATCGGGGAGTCGCCGTGAAGCCCAGTCTGAGTTGGCTAGGGTGGGTAAGAAGGCTAAGTTGGGGAAGGGAGTTGTTTCAGGCCCATTGACCTTTCAACCGAGCGTCGATCTTCCAAATATTAATGGGGTAATCTATTTATCCCCAAAGAAGCGAGGCCGGCCCAAAGGCAGCAGAAATGTAGCAAAGCTTGGGCTAGGGATGCCAAAGCCTAAAAAGAAGAGGTTTCCTAAGAAGACTGGGGAACCAAAGGAGATGGAGGTGGCGGTGAGTTCATCTTCCTCAAGGACAGTGCATGAGGAGGCCATAGGGCCCAAGGTAGGAGAAACAGTGGATGGTGCCACCATTCCGGCGATGGCATCAGGAGCCAATAAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

268

Amino Acids

28.37

Weight (kDa)

10.0

Isoelectric Point (pI)

44.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015769)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007775 RLG00000013915 RLG00000013916 RLG00000016936 RLG00000019193 RLG00000030532 RLG00000033599 RLG00000034539
rosa_multiflora	Rmu_sc0002378.1_g000019
rosa_roxburghii	Rroxscaffold_3G00219960 Rroxscaffold_4G00329080 Rroxscaffold_5G00343050
rosa_rugosa	Rorug02G0085600
rosa_samantha	Rh6AG180100 Rh6BG163900 Rh7AG490700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	21
AccB1I	GGYRCC	1 cut(s)	764
AccI	GTMKAC	1 cut(s)	21
AciI	CCGC	3 cut(s)	149, 212, 692
AclWI	GGATC	2 cut(s)	144, 169
AcyI	GRCGYC	3 cut(s)	18, 236, 272
AfiI	CCNNNNNNNGG	2 cut(s)	230, 746
AgeI	ACCGGT	1 cut(s)	292
AgsI	TTSAA	1 cut(s)	524
AjnI	CCWGG	1 cut(s)	132
AjuI	GAANNNNNNNTTGG	2 cut(s)	470, 502
AluBI	AGCT	1 cut(s)	616
AluI	AGCT	1 cut(s)	616
Alw26I	GTCTC	1 cut(s)	279
AlwI	GGATC	2 cut(s)	144, 169
Ama87I	CYCGRG	2 cut(s)	276, 376
AoxI	GGCC	8 cut(s)	130, 373, 411, 508, 583, 587, 729, 737
ApaI	GGGCCC	1 cut(s)	741
ApeKI	GCWGC	3 cut(s)	308, 311, 597
AseI	ATTAAT	1 cut(s)	549
AsiGI	ACCGGT	1 cut(s)	292
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	7 cut(s)	117, 221, 374, 509, 588, 737, 738
AsuC2I	CCSGG	2 cut(s)	377, 378
AsuHPI	GGTGA	2 cut(s)	408, 706
AsuII	TTCGAA	1 cut(s)	323
AvaI	CYCGRG	2 cut(s)	276, 376
AvaII	GGWCC	2 cut(s)	117, 221
BaeGI	GKGCMC	1 cut(s)	741
BanI	GGYRCC	1 cut(s)	764
BanII	GRGCYC	1 cut(s)	741
BbsI	GAAGAC	1 cut(s)	668
BbvI	GCAGC	3 cut(s)	295, 323, 609
BccI	CCATC	5 cut(s)	262, 298, 676, 755, 775
BceAI	ACGGC	1 cut(s)	426
BcgI	CGANNNNNNTGC	2 cut(s)	303, 337
BciT130I	CCWGG	1 cut(s)	134
BcnI	CCSGG	2 cut(s)	377, 378
BcoDI	GTCTC	1 cut(s)	279
BfaI	CTAG	2 cut(s)	465, 623
BfmI	CTRYAG	1 cut(s)	309
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	3 cut(s)	309, 312, 598
BlsI	GCNGC	3 cut(s)	310, 313, 599
Bme1390I	CCNGG	3 cut(s)	134, 377, 378
Bme18I	GGWCC	2 cut(s)	117, 221
BmeT110I	CYCGRG	2 cut(s)	276, 376
BmgT120I	GGNCC	7 cut(s)	117, 221, 374, 509, 588, 737, 738
BmiI	GGNNCC	7 cut(s)	33, 222, 390, 672, 739, 766, 793
BmrFI	CCNGG	3 cut(s)	134, 377, 378
BmrI	ACTGGG	2 cut(s)	445, 675
BmsI	GCATC	3 cut(s)	43, 618, 794
BmuI	ACTGGG	2 cut(s)	445, 675
BpiI	GAAGAC	1 cut(s)	668
Bpu14I	TTCGAA	1 cut(s)	323
BpuEI	CTTGAG	1 cut(s)	694
BpuMI	CCSGG	2 cut(s)	377, 378
BsaHI	GRCGYC	3 cut(s)	18, 236, 272
BsaJI	CCNNGG	3 cut(s)	363, 376, 741
BsaWI	WCCGGW	1 cut(s)	292
BsaXI	ACNNNNNCTCC	4 cut(s)	427, 457, 741, 771
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 746
Bse118I	RCCGGY	2 cut(s)	292, 585
Bse1I	ACTGG	2 cut(s)	451, 670
Bse3DI	GCAATG	1 cut(s)	265
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	3 cut(s)	363, 376, 741
BseGI	GGATG	2 cut(s)	633, 766
BseLI	CCNNNNNNNGG	2 cut(s)	230, 746
BseMI	GCAATG	1 cut(s)	265
BseMII	CTCAG	1 cut(s)	447
BseNI	ACTGG	2 cut(s)	451, 670
BseRI	GAGGAG	1 cut(s)	740
BseSI	GKGCMC	1 cut(s)	741
BseXI	GCAGC	3 cut(s)	295, 323, 609
BshFI	GGCC	8 cut(s)	132, 375, 413, 510, 585, 589, 731, 739
BshNI	GGYRCC	1 cut(s)	764
BshTI	ACCGGT	1 cut(s)	292
BsiHKCI	CYCGRG	2 cut(s)	276, 376
BsiSI	CCGG	4 cut(s)	293, 377, 586, 776
BslFI	GGGAC	2 cut(s)	234, 293
BslI	CCNNNNNNNGG	2 cut(s)	230, 746
BsmAI	GTCTC	1 cut(s)	279
BsmBI	CGTCTC	1 cut(s)	279
BsmFI	GGGAC	2 cut(s)	234, 293
BsnI	GGCC	8 cut(s)	132, 375, 413, 510, 585, 589, 731, 739
BsoBI	CYCGRG	2 cut(s)	276, 376
Bsp119I	TTCGAA	1 cut(s)	323
Bsp120I	GGGCCC	1 cut(s)	737
Bsp1286I	GDGCHC	1 cut(s)	741
Bsp143I	GATC	3 cut(s)	136, 174, 535
BspACI	CCGC	3 cut(s)	149, 212, 692
BspANI	GGCC	8 cut(s)	132, 375, 413, 510, 585, 589, 731, 739
BspCNI	CTCAG	1 cut(s)	448
BspLI	GGNNCC	7 cut(s)	33, 222, 390, 672, 739, 766, 793
BspMAI	CTGCAG	1 cut(s)	313
BspPI	GGATC	2 cut(s)	144, 169
BspT104I	TTCGAA	1 cut(s)	323
BspT107I	GGYRCC	1 cut(s)	764
BsrDI	GCAATG	1 cut(s)	265
BsrFI	RCCGGY	2 cut(s)	292, 585
BsrI	ACTGG	2 cut(s)	451, 670
BssAI	RCCGGY	2 cut(s)	292, 585
BssECI	CCNNGG	3 cut(s)	363, 376, 741
BssMI	GATC	3 cut(s)	136, 174, 535
BssNI	GRCGYC	3 cut(s)	18, 236, 272
BssT1I	CCWWGG	1 cut(s)	741
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	5 cut(s)	26, 225, 385, 718, 757
Bst6I	CTCTTC	1 cut(s)	641
BstACI	GRCGYC	3 cut(s)	18, 236, 272
BstBI	TTCGAA	1 cut(s)	323
BstC8I	GCNNGC	1 cut(s)	587
BstDEI	CTNAG	4 cut(s)	13, 456, 483, 657
BstF5I	GGATG	2 cut(s)	633, 766
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	3 cut(s)	139, 177, 538
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	3 cut(s)	136, 174, 535
BstMWI	GCNNNNNNNGC	3 cut(s)	586, 628, 791
BstNI	CCWGG	1 cut(s)	134
BstSCI	CCNGG	3 cut(s)	132, 375, 376
BstSFI	CTRYAG	1 cut(s)	309
BstSLI	GKGCMC	1 cut(s)	741
BstV1I	GCAGC	3 cut(s)	295, 323, 609
BstV2I	GAAGAC	1 cut(s)	668
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BsuRI	GGCC	8 cut(s)	132, 375, 413, 510, 585, 589, 731, 739
BtgZI	GCGATG	1 cut(s)	794
BtsCI	GGATG	2 cut(s)	633, 766
BtsIMutI	CAGTG	3 cut(s)	390, 723, 762
Cac8I	GCNNGC	1 cut(s)	587
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	2 cut(s)	292, 585
Cfr13I	GGNCC	7 cut(s)	117, 221, 374, 509, 588, 737, 738
Cfr9I	CCCGGG	1 cut(s)	376
CseI	GACGC	3 cut(s)	225, 261, 520
CspAI	ACCGGT	1 cut(s)	292
CviAII	CATG	3 cut(s)	73, 254, 722
DdeI	CTNAG	4 cut(s)	13, 456, 483, 657
DpnI	GATC	3 cut(s)	138, 176, 537
DpnII	GATC	3 cut(s)	136, 174, 535
Eam1104I	CTCTTC	1 cut(s)	641
EarI	CTCTTC	1 cut(s)	641
Eco130I	CCWWGG	1 cut(s)	741
Eco24I	GRGCYC	1 cut(s)	741
Eco47I	GGWCC	2 cut(s)	117, 221
Eco88I	CYCGRG	2 cut(s)	276, 376
EcoO109I	RGGNCCY	1 cut(s)	737
EcoRII	CCWGG	1 cut(s)	132
EcoT14I	CCWWGG	1 cut(s)	741
EcoT38I	GRGCYC	1 cut(s)	741
ErhI	CCWWGG	1 cut(s)	741
Esp3I	CGTCTC	1 cut(s)	279
FaeI	CATG	3 cut(s)	76, 257, 725
FaiI	YATR	7 cut(s)	29, 39, 74, 113, 255, 723, 734
FaqI	GGGAC	2 cut(s)	234, 293
FatI	CATG	3 cut(s)	72, 253, 721
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	3 cut(s)	309, 312, 598
FokI	GGATG	2 cut(s)	640, 773
FriOI	GRGCYC	1 cut(s)	741
FseI	GGCCGGCC	1 cut(s)	589
Fsp4HI	GCNGC	3 cut(s)	309, 312, 598
FspBI	CTAG	2 cut(s)	465, 623
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	3 cut(s)	309, 312, 598
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	8 cut(s)	132, 375, 413, 510, 585, 589, 731, 739
HapII	CCGG	4 cut(s)	293, 377, 586, 776
HgaI	GACGC	3 cut(s)	225, 261, 520
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	3 cut(s)	18, 236, 272
Hin1II	CATG	3 cut(s)	76, 257, 725
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HindIII	AAGCTT	1 cut(s)	614
HinfI	GANTC	2 cut(s)	320, 436
HpaII	CCGG	4 cut(s)	293, 377, 586, 776
HphI	GGTGA	2 cut(s)	408, 706
Hpy166II	GTNNAC	2 cut(s)	22, 117
Hpy188I	TCNGA	5 cut(s)	171, 198, 301, 364, 457
Hpy188III	TCNNGA	3 cut(s)	178, 278, 789
Hpy8I	GTNNAC	2 cut(s)	22, 117
Hpy99I	CGWCG	4 cut(s)	23, 26, 241, 536
HpyAV	CCTTC	3 cut(s)	193, 472, 487
HpyCH4III	ACNGT	5 cut(s)	26, 225, 385, 718, 757
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	3 cut(s)	253, 311, 721
HpyF10VI	GCNNNNNNNGC	3 cut(s)	586, 628, 791
HpyF3I	CTNAG	4 cut(s)	13, 456, 483, 657
HpySE526I	ACGT	1 cut(s)	18
Hsp92I	GRCGYC	3 cut(s)	18, 236, 272
Hsp92II	CATG	3 cut(s)	76, 257, 725
HspAI	GCGC	1 cut(s)	5
KroI	GCCGGC	1 cut(s)	585
KroNI	GCCGGC	1 cut(s)	587
Kzo9I	GATC	3 cut(s)	136, 174, 535
LmnI	GCTCC	2 cut(s)	61, 791
Lsp1109I	GCAGC	3 cut(s)	295, 323, 609
LweI	GCATC	3 cut(s)	43, 618, 794
MaeI	CTAG	2 cut(s)	465, 623
MaeII	ACGT	1 cut(s)	18
MalI	GATC	3 cut(s)	138, 176, 537
MboI	GATC	3 cut(s)	136, 174, 535
MboII	GAAGA	4 cut(s)	530, 658, 673, 696
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	1 cut(s)	741
MlyI	GAGTC	1 cut(s)	445
MroNI	GCCGGC	1 cut(s)	585
MseI	TTAA	1 cut(s)	549
MslI	CAYNNNNRTG	2 cut(s)	71, 258
MspI	CCGG	4 cut(s)	293, 377, 586, 776
MspR9I	CCNGG	3 cut(s)	134, 377, 378
MvaI	CCWGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	3 cut(s)	586, 628, 791
NaeI	GCCGGC	1 cut(s)	587
NciI	CCSGG	2 cut(s)	377, 378
NdeII	GATC	3 cut(s)	136, 174, 535
NgoMIV	GCCGGC	1 cut(s)	585
NlaIII	CATG	3 cut(s)	76, 257, 725
NlaIV	GGNNCC	7 cut(s)	33, 222, 390, 672, 739, 766, 793
NmeAIII	GCCGAG	1 cut(s)	120
NspV	TTCGAA	1 cut(s)	323
PdiI	GCCGGC	1 cut(s)	587
PfeI	GAWTC	1 cut(s)	320
PinAI	ACCGGT	1 cut(s)	292
PkrI	GCNGC	3 cut(s)	310, 313, 599
PleI	GAGTC	1 cut(s)	444
PpsI	GAGTC	1 cut(s)	444
PshBI	ATTAAT	1 cut(s)	549
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	7 cut(s)	33, 222, 390, 672, 739, 766, 793
PspOMI	GGGCCC	1 cut(s)	737
PspPI	GGNCC	7 cut(s)	117, 221, 374, 509, 588, 737, 738
PstI	CTGCAG	1 cut(s)	313
PsuI	RGATCY	1 cut(s)	136
RigI	GGCCGGCC	1 cut(s)	589
RseI	CAYNNNNRTG	2 cut(s)	71, 258
SalI	GTCGAC	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	549
SatI	GCNGC	3 cut(s)	309, 312, 598
Sau3AI	GATC	3 cut(s)	136, 174, 535
Sau96I	GGNCC	7 cut(s)	117, 221, 374, 509, 588, 737, 738
SchI	GAGTC	1 cut(s)	445
ScrFI	CCNGG	3 cut(s)	134, 377, 378
SduI	GDGCHC	1 cut(s)	741
SfaNI	GCATC	3 cut(s)	43, 618, 794
SfcI	CTRYAG	1 cut(s)	309
SfuI	TTCGAA	1 cut(s)	323
SgrDI	CGTCGACG	1 cut(s)	20
SinI	GGWCC	2 cut(s)	117, 221
SmaI	CCCGGG	1 cut(s)	378
SmiMI	CAYNNNNRTG	2 cut(s)	71, 258
SmlI	CTYRAG	1 cut(s)	709
SmoI	CTYRAG	1 cut(s)	709
SsiI	CCGC	3 cut(s)	149, 212, 692
SspI	AATATT	1 cut(s)	547
SspMI	CTAG	2 cut(s)	465, 623
StyD4I	CCNGG	3 cut(s)	132, 375, 376
StyI	CCWWGG	1 cut(s)	741
TaaI	ACNGT	5 cut(s)	26, 225, 385, 718, 757
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	4 cut(s)	21, 266, 323, 534
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	1 cut(s)	549
Tru9I	TTAA	1 cut(s)	549
TscAI	CASTG	3 cut(s)	390, 723, 762
TseI	GCWGC	3 cut(s)	308, 311, 597
TspDTI	ATGAA	2 cut(s)	359, 690
TspMI	CCCGGG	1 cut(s)	376
TspRI	CASTG	3 cut(s)	390, 723, 762
VpaK11BI	GGWCC	2 cut(s)	117, 221
VspI	ATTAAT	1 cut(s)	549
XcmI	CCANNNNNNNNNTGG	1 cut(s)	778
XmaI	CCCGGG	1 cut(s)	376
XmiI	GTMKAC	1 cut(s)	21
XspI	CTAG	2 cut(s)	465, 623
ZraI	GACGTC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.