Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0009742

Physical Location & Seq

Genomic Coordinates Forward (+)

30489413 .. 30493222

Gene Structure 3810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008433

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTCTCAAGGTGTGAATCATAATTATGGAAGAAGAGCAGGAATGTACTATATTGATGCAGTTAGAGAAACTGAGCATGATGTACCAATTTACATAATATCTCCAACTACTCAAGGGCCCATTCCAGTTGCAGTTCATGGTCCGGTTCTAGAAGATGATGGCAACAGCCTTGCTGCAAAAGATGAGGAGCTAAATGAGAATATCCTTAAACAAAACAATGAAGACCAAATGATTGTAGAACAAGAACACTTCTCAGATAATGAAAATGATGGAGCTGCAAACTCGCCGGCAACTCCGTCGTCGTCGTCTTCCTGCTCGACTGGACCCTCCTCCAGATCAACTCGCACCTCCAATTCCTTCAACGGGTCCCTCTCCGATGATCGCGACCCGATCTTTGAAGCCCCGAAAGCCCAAGACTTTGAGAAGATCTTCGATGGCTCGGCCAAGTTCTCCATCAATTTCGAAGCTTTCAACTTGGATTCCATGTACGGTGGTGGTGGGCCCACTGATTCCTCCTCTAAGGTCTCCGATTCCTGCCCGGCGTTACTGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0016020 GO:0016192 GO:0031982 GO:0043226 GO:0043227 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

185

Amino Acids

19.73

Weight (kDa)

4.33

Isoelectric Point (pI)

59.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009742)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008433 RLG00000009204 RLG00000022305 RLG00000022729
rosa_multiflora	Rmu_sc0004660.1_g000015 Rmu_sc0027128.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433770 Rroxscaffold_4G00328040 Rroxscaffold_7G00174430
rosa_rugosa	Rorug02G0120600
rosa_samantha	Rh1BG041000 Rh1CG054600 Rh2CG176100 Rh2CG370700 Rh3AG328800 Rh4AG061900 Rh4BG059500 Rh4CG065200 Rh5AG130900 Rh5DG131000 Rh6CG359500 Rh7CG314700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	384
AcoI	YGGCCR	1 cut(s)	441
AfaI	GTAC	3 cut(s)	47, 84, 488
AfiI	CCNNNNNNNGG	1 cut(s)	363
AgsI	TTSAA	3 cut(s)	361, 398, 472
AluBI	AGCT	3 cut(s)	190, 275, 467
AluI	AGCT	3 cut(s)	190, 275, 467
Alw26I	GTCTC	2 cut(s)	9, 529
AoxI	GGCC	3 cut(s)	116, 441, 500
ApaI	GGGCCC	2 cut(s)	120, 504
ApeKI	GCWGC	2 cut(s)	173, 275
ArsI	GACNNNNNNTTYG	2 cut(s)	377, 409
Asp700I	GAANNNNTTC	1 cut(s)	428
AspS9I	GGNCC	7 cut(s)	116, 117, 140, 323, 366, 500, 501
AsuC2I	CCSGG	1 cut(s)	539
AsuII	TTCGAA	1 cut(s)	462
AvaII	GGWCC	3 cut(s)	140, 323, 366
BaeGI	GKGCMC	2 cut(s)	120, 504
BanII	GRGCYC	2 cut(s)	120, 504
BbsI	GAAGAC	2 cut(s)	228, 300
BbvI	GCAGC	2 cut(s)	160, 262
BccI	CCATC	4 cut(s)	152, 263, 428, 461
BcgI	CGANNNNNNTGC	2 cut(s)	279, 313
BcnI	CCSGG	1 cut(s)	539
BcoDI	GTCTC	2 cut(s)	9, 529
BfaI	CTAG	1 cut(s)	149
BglII	AGATCT	1 cut(s)	426
BisI	GCNGC	2 cut(s)	174, 276
BlsI	GCNGC	2 cut(s)	175, 277
Bme1390I	CCNGG	1 cut(s)	539
Bme18I	GGWCC	3 cut(s)	140, 323, 366
BmgT120I	GGNCC	7 cut(s)	116, 117, 140, 323, 366, 500, 501
BmiI	GGNNCC	5 cut(s)	118, 325, 367, 368, 502
BmrFI	CCNGG	1 cut(s)	539
BmsI	GCATC	1 cut(s)	46
BpiI	GAAGAC	2 cut(s)	228, 300
BpmI	CTGGAG	1 cut(s)	316
Bpu14I	TTCGAA	1 cut(s)	462
BpuEI	CTTGAG	1 cut(s)	96
BpuMI	CCSGG	1 cut(s)	539
BsaI	GGTCTC	1 cut(s)	529
BsaWI	WCCGGW	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	1 cut(s)	363
Bse118I	RCCGGY	1 cut(s)	286
Bse1I	ACTGG	3 cut(s)	125, 325, 552
BseLI	CCNNNNNNNGG	1 cut(s)	363
BseMII	CTCAG	2 cut(s)	63, 267
BseNI	ACTGG	3 cut(s)	125, 325, 552
BseRI	GAGGAG	3 cut(s)	200, 319, 505
BseSI	GKGCMC	2 cut(s)	120, 504
BseXI	GCAGC	2 cut(s)	160, 262
Bsh1236I	CGCG	1 cut(s)	384
BshFI	GGCC	3 cut(s)	118, 443, 502
BsiSI	CCGG	3 cut(s)	143, 287, 539
BslFI	GGGAC	1 cut(s)	352
BslI	CCNNNNNNNGG	1 cut(s)	363
BsmAI	GTCTC	2 cut(s)	9, 529
BsmFI	GGGAC	1 cut(s)	352
BsnI	GGCC	3 cut(s)	118, 443, 502
Bso31I	GGTCTC	1 cut(s)	529
Bsp119I	TTCGAA	1 cut(s)	462
Bsp120I	GGGCCC	2 cut(s)	116, 500
Bsp1286I	GDGCHC	2 cut(s)	120, 504
Bsp143I	GATC	4 cut(s)	335, 379, 390, 426
Bsp68I	TCGCGA	1 cut(s)	384
BspANI	GGCC	3 cut(s)	118, 443, 502
BspCNI	CTCAG	2 cut(s)	64, 266
BspFNI	CGCG	1 cut(s)	384
BspLI	GGNNCC	5 cut(s)	118, 325, 367, 368, 502
BspQI	GCTCTTC	1 cut(s)	28
BspT104I	TTCGAA	1 cut(s)	462
BspTNI	GGTCTC	1 cut(s)	529
BsrFI	RCCGGY	1 cut(s)	286
BsrI	ACTGG	3 cut(s)	125, 325, 552
BssAI	RCCGGY	1 cut(s)	286
BssMI	GATC	4 cut(s)	335, 379, 390, 426
Bst4CI	ACNGT	1 cut(s)	491
Bst6I	CTCTTC	1 cut(s)	28
BstBI	TTCGAA	1 cut(s)	462
BstC8I	GCNNGC	1 cut(s)	288
BstDEI	CTNAG	3 cut(s)	72, 253, 519
BstFNI	CGCG	1 cut(s)	384
BstKTI	GATC	4 cut(s)	338, 382, 393, 429
BstMAI	GTCTC	2 cut(s)	9, 529
BstMBI	GATC	4 cut(s)	335, 379, 390, 426
BstMWI	GCNNNNNNNGC	1 cut(s)	407
BstSCI	CCNGG	1 cut(s)	537
BstSLI	GKGCMC	2 cut(s)	120, 504
BstUI	CGCG	1 cut(s)	384
BstV1I	GCAGC	2 cut(s)	160, 262
BstV2I	GAAGAC	2 cut(s)	228, 300
BstX2I	RGATCY	1 cut(s)	426
BstYI	RGATCY	1 cut(s)	426
BsuRI	GGCC	3 cut(s)	118, 443, 502
BtsIMutI	CAGTG	1 cut(s)	504
BtuMI	TCGCGA	1 cut(s)	384
Cac8I	GCNNGC	1 cut(s)	288
Cfr10I	RCCGGY	1 cut(s)	286
Cfr13I	GGNCC	7 cut(s)	116, 117, 140, 323, 366, 500, 501
Csp6I	GTAC	3 cut(s)	46, 83, 487
CviAII	CATG	3 cut(s)	77, 137, 484
CviQI	GTAC	3 cut(s)	46, 83, 487
DdeI	CTNAG	3 cut(s)	72, 253, 519
DpnI	GATC	4 cut(s)	337, 381, 392, 428
DpnII	GATC	4 cut(s)	335, 379, 390, 426
EaeI	YGGCCR	1 cut(s)	441
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
Eco24I	GRGCYC	2 cut(s)	120, 504
Eco31I	GGTCTC	1 cut(s)	529
Eco47I	GGWCC	3 cut(s)	140, 323, 366
EcoO109I	RGGNCCY	2 cut(s)	116, 366
EcoT38I	GRGCYC	2 cut(s)	120, 504
FaeI	CATG	3 cut(s)	80, 140, 487
FaiI	YATR	7 cut(s)	21, 27, 51, 78, 95, 138, 485
FaqI	GGGAC	1 cut(s)	352
FatI	CATG	3 cut(s)	76, 136, 483
Fnu4HI	GCNGC	2 cut(s)	174, 276
FriOI	GRGCYC	2 cut(s)	120, 504
Fsp4HI	GCNGC	2 cut(s)	174, 276
FspBI	CTAG	1 cut(s)	149
GluI	GCNGC	2 cut(s)	174, 276
GsuI	CTGGAG	1 cut(s)	316
HaeIII	GGCC	3 cut(s)	118, 443, 502
HapII	CCGG	3 cut(s)	143, 287, 539
Hin1II	CATG	3 cut(s)	80, 140, 487
HindIII	AAGCTT	1 cut(s)	465
HinfI	GANTC	4 cut(s)	16, 479, 509, 530
HpaII	CCGG	3 cut(s)	143, 287, 539
Hpy188I	TCNGA	3 cut(s)	256, 376, 529
Hpy188III	TCNNGA	3 cut(s)	149, 333, 383
Hpy99I	CGWCG	3 cut(s)	301, 304, 307
HpyAV	CCTTC	1 cut(s)	367
HpyCH4III	ACNGT	1 cut(s)	491
HpyCH4V	TGCA	4 cut(s)	59, 131, 176, 278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	407
HpyF3I	CTNAG	3 cut(s)	72, 253, 519
Hsp92II	CATG	3 cut(s)	80, 140, 487
KflI	GGGWCCC	1 cut(s)	366
KroI	GCCGGC	1 cut(s)	286
KroNI	GCCGGC	1 cut(s)	288
Kzo9I	GATC	4 cut(s)	335, 379, 390, 426
LguI	GCTCTTC	1 cut(s)	28
LmnI	GCTCC	2 cut(s)	187, 272
LpnPI	CCDG	9 cut(s)	24, 138, 156, 300, 306, 325, 346, 533, 547
Lsp1109I	GCAGC	2 cut(s)	160, 262
LweI	GCATC	1 cut(s)	46
MaeI	CTAG	1 cut(s)	149
MaeIII	GTNAC	1 cut(s)	543
MalI	GATC	4 cut(s)	337, 381, 392, 428
MboI	GATC	4 cut(s)	335, 379, 390, 426
MboII	GAAGA	7 cut(s)	42, 45, 164, 233, 300, 421, 436
MflI	RGATCY	1 cut(s)	426
MhlI	GDGCHC	2 cut(s)	120, 504
MluCI	AATT	4 cut(s)	22, 87, 352, 457
MmeI	TCCRAC	1 cut(s)	128
MnlI	CCTC	7 cut(s)	178, 337, 340, 358, 380, 523, 526
MroNI	GCCGGC	1 cut(s)	286
MroXI	GAANNNNTTC	1 cut(s)	428
MseI	TTAA	1 cut(s)	207
MslI	CAYNNNNRTG	1 cut(s)	24
MspI	CCGG	3 cut(s)	143, 287, 539
MspR9I	CCNGG	1 cut(s)	539
MvnI	CGCG	1 cut(s)	384
MwoI	GCNNNNNNNGC	1 cut(s)	407
NaeI	GCCGGC	1 cut(s)	288
NciI	CCSGG	1 cut(s)	539
NdeII	GATC	4 cut(s)	335, 379, 390, 426
NgoMIV	GCCGGC	1 cut(s)	286
NlaIII	CATG	3 cut(s)	80, 140, 487
NlaIV	GGNNCC	5 cut(s)	118, 325, 367, 368, 502
NmeAIII	GCCGAG	1 cut(s)	419
NruI	TCGCGA	1 cut(s)	384
NspV	TTCGAA	1 cut(s)	462
PciSI	GCTCTTC	1 cut(s)	28
PdiI	GCCGGC	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	428
PfeI	GAWTC	4 cut(s)	16, 479, 509, 530
PkrI	GCNGC	2 cut(s)	175, 277
PpuMI	RGGWCCY	1 cut(s)	366
Psp5II	RGGWCCY	1 cut(s)	366
PspN4I	GGNNCC	5 cut(s)	118, 325, 367, 368, 502
PspOMI	GGGCCC	2 cut(s)	116, 500
PspPI	GGNCC	7 cut(s)	116, 117, 140, 323, 366, 500, 501
PspPPI	RGGWCCY	1 cut(s)	366
PsuI	RGATCY	1 cut(s)	426
RruI	TCGCGA	1 cut(s)	384
RsaI	GTAC	3 cut(s)	47, 84, 488
RsaNI	GTAC	3 cut(s)	46, 83, 487
RseI	CAYNNNNRTG	1 cut(s)	24
SapI	GCTCTTC	1 cut(s)	28
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	2 cut(s)	174, 276
Sau3AI	GATC	4 cut(s)	335, 379, 390, 426
Sau96I	GGNCC	7 cut(s)	116, 117, 140, 323, 366, 500, 501
ScrFI	CCNGG	1 cut(s)	539
SduI	GDGCHC	2 cut(s)	120, 504
SetI	ASST	6 cut(s)	13, 192, 277, 350, 469, 525
SfaNI	GCATC	1 cut(s)	46
SfuI	TTCGAA	1 cut(s)	462
SinI	GGWCC	3 cut(s)	140, 323, 366
SmiMI	CAYNNNNRTG	1 cut(s)	24
SmlI	CTYRAG	2 cut(s)	6, 111
SmoI	CTYRAG	2 cut(s)	6, 111
Sse9I	AATT	4 cut(s)	22, 87, 352, 457
SspMI	CTAG	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	537
TaaI	ACNGT	1 cut(s)	491
TaqI	TCGA	3 cut(s)	317, 432, 462
TasI	AATT	4 cut(s)	22, 87, 352, 457
TatI	WGTACW	1 cut(s)	45
TfiI	GAWTC	4 cut(s)	16, 479, 509, 530
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	1 cut(s)	511
TseI	GCWGC	2 cut(s)	173, 275
TspDTI	ATGAA	3 cut(s)	125, 234, 276
TspGWI	ACGGA	1 cut(s)	285
TspRI	CASTG	1 cut(s)	511
VpaK11BI	GGWCC	3 cut(s)	140, 323, 366
XbaI	TCTAGA	1 cut(s)	148
XmnI	GAANNNNTTC	1 cut(s)	428
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.