Auxilin-related protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_laevigata | RLG00000008433 RLG00000009204 RLG00000022305 RLG00000022729 |
| rosa_multiflora | Rmu_sc0004660.1_g000015 Rmu_sc0027128.1_g000001 |
| rosa_roxburghii | Rroxscaffold_160G00433770 Rroxscaffold_4G00328040 Rroxscaffold_7G00174430 |
| rosa_rugosa | Rorug02G0120600 |
| rosa_samantha | Rh1BG041000 Rh1CG054600 Rh2CG176100 Rh2CG370700 Rh3AG328800 Rh4AG061900 Rh4BG059500 Rh4CG065200 Rh5AG130900 Rh5DG131000 Rh6CG359500 Rh7CG314700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 51 |
| AciI | CCGC | 2 cut(s) | 249, 323 |
| AclWI | GGATC | 1 cut(s) | 136 |
| AcsI | RAATTY | 1 cut(s) | 278 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 14, 177 |
| AflII | CTTAAG | 1 cut(s) | 23 |
| AgsI | TTSAA | 5 cut(s) | 44, 105, 175, 277, 286 |
| AjnI | CCWGG | 1 cut(s) | 257 |
| AluBI | AGCT | 2 cut(s) | 28, 116 |
| AluI | AGCT | 2 cut(s) | 28, 116 |
| Alw26I | GTCTC | 2 cut(s) | 9, 24 |
| AlwI | GGATC | 1 cut(s) | 136 |
| Ama87I | CYCGRG | 1 cut(s) | 14 |
| Aor13HI | TCCGGA | 1 cut(s) | 51 |
| AoxI | GGCC | 3 cut(s) | 61, 310, 345 |
| ApaI | GGGCCC | 1 cut(s) | 314 |
| ApoI | RAATTY | 1 cut(s) | 278 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 191, 223 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 242 |
| AspS9I | GGNCC | 6 cut(s) | 62, 137, 180, 310, 311, 346 |
| AsuII | TTCGAA | 1 cut(s) | 210 |
| AvaI | CYCGRG | 1 cut(s) | 14 |
| AvaII | GGWCC | 2 cut(s) | 137, 180 |
| BaeGI | GKGCMC | 1 cut(s) | 314 |
| BanII | GRGCYC | 1 cut(s) | 314 |
| BbsI | GAAGAC | 1 cut(s) | 64 |
| BceAI | ACGGC | 1 cut(s) | 53 |
| BciT130I | CCWGG | 1 cut(s) | 259 |
| BcoDI | GTCTC | 2 cut(s) | 9, 24 |
| BfrI | CTTAAG | 1 cut(s) | 23 |
| BglII | AGATCT | 1 cut(s) | 204 |
| Bme1390I | CCNGG | 1 cut(s) | 259 |
| Bme18I | GGWCC | 2 cut(s) | 137, 180 |
| BmeT110I | CYCGRG | 1 cut(s) | 14 |
| BmgT120I | GGNCC | 6 cut(s) | 62, 137, 180, 310, 311, 346 |
| BmiI | GGNNCC | 5 cut(s) | 64, 139, 181, 312, 313 |
| BmrFI | CCNGG | 1 cut(s) | 259 |
| BpiI | GAAGAC | 1 cut(s) | 64 |
| BpmI | CTGGAG | 1 cut(s) | 130 |
| Bpu14I | TTCGAA | 1 cut(s) | 210 |
| BsaI | GGTCTC | 1 cut(s) | 24 |
| BsaJI | CCNNGG | 2 cut(s) | 297, 329 |
| BsaWI | WCCGGW | 2 cut(s) | 51, 134 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 14, 177 |
| Bse118I | RCCGGY | 1 cut(s) | 363 |
| BseAI | TCCGGA | 1 cut(s) | 51 |
| BseBI | CCWGG | 1 cut(s) | 259 |
| BseDI | CCNNGG | 2 cut(s) | 297, 329 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 14, 177 |
| BseRI | GAGGAG | 1 cut(s) | 133 |
| BseSI | GKGCMC | 1 cut(s) | 314 |
| BseYI | CCCAGC | 1 cut(s) | 112 |
| Bsh1285I | CGRYCG | 1 cut(s) | 196 |
| BshFI | GGCC | 3 cut(s) | 63, 312, 347 |
| BsiEI | CGRYCG | 1 cut(s) | 196 |
| BsiHKCI | CYCGRG | 1 cut(s) | 14 |
| BsiSI | CCGG | 3 cut(s) | 52, 135, 364 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 14, 177 |
| BsmAI | GTCTC | 2 cut(s) | 9, 24 |
| BsnI | GGCC | 3 cut(s) | 63, 312, 347 |
| Bso31I | GGTCTC | 1 cut(s) | 24 |
| BsoBI | CYCGRG | 1 cut(s) | 14 |
| Bsp119I | TTCGAA | 1 cut(s) | 210 |
| Bsp120I | GGGCCC | 1 cut(s) | 310 |
| Bsp1286I | GDGCHC | 1 cut(s) | 314 |
| Bsp13I | TCCGGA | 1 cut(s) | 51 |
| Bsp143I | GATC | 5 cut(s) | 121, 128, 149, 193, 204 |
| Bsp19I | CCATGG | 1 cut(s) | 297 |
| BspACI | CCGC | 2 cut(s) | 249, 323 |
| BspANI | GGCC | 3 cut(s) | 63, 312, 347 |
| BspEI | TCCGGA | 1 cut(s) | 51 |
| BspLI | GGNNCC | 5 cut(s) | 64, 139, 181, 312, 313 |
| BspPI | GGATC | 1 cut(s) | 136 |
| BspT104I | TTCGAA | 1 cut(s) | 210 |
| BspTI | CTTAAG | 1 cut(s) | 23 |
| BspTNI | GGTCTC | 1 cut(s) | 24 |
| BsrFI | RCCGGY | 1 cut(s) | 363 |
| BssAI | RCCGGY | 1 cut(s) | 363 |
| BssECI | CCNNGG | 2 cut(s) | 297, 329 |
| BssMI | GATC | 5 cut(s) | 121, 128, 149, 193, 204 |
| BssT1I | CCWWGG | 2 cut(s) | 297, 329 |
| Bst2UI | CCWGG | 1 cut(s) | 259 |
| Bst6I | CTCTTC | 1 cut(s) | 94 |
| BstAFI | CTTAAG | 1 cut(s) | 23 |
| BstBI | TTCGAA | 1 cut(s) | 210 |
| BstDSI | CCRYGG | 1 cut(s) | 297 |
| BstKTI | GATC | 5 cut(s) | 124, 131, 152, 196, 207 |
| BstMAI | GTCTC | 2 cut(s) | 9, 24 |
| BstMBI | GATC | 5 cut(s) | 121, 128, 149, 193, 204 |
| BstMCI | CGRYCG | 1 cut(s) | 196 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 221, 398 |
| BstNI | CCWGG | 1 cut(s) | 259 |
| BstSCI | CCNGG | 1 cut(s) | 257 |
| BstSLI | GKGCMC | 1 cut(s) | 314 |
| BstV2I | GAAGAC | 1 cut(s) | 64 |
| BstX2I | RGATCY | 2 cut(s) | 128, 204 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 304 |
| BstYI | RGATCY | 2 cut(s) | 128, 204 |
| BsuRI | GGCC | 3 cut(s) | 63, 312, 347 |
| BtgI | CCRYGG | 1 cut(s) | 297 |
| Cfr10I | RCCGGY | 1 cut(s) | 363 |
| Cfr13I | GGNCC | 6 cut(s) | 62, 137, 180, 310, 311, 346 |
| CviAII | CATG | 1 cut(s) | 298 |
| DpnI | GATC | 5 cut(s) | 123, 130, 151, 195, 206 |
| DpnII | GATC | 5 cut(s) | 121, 128, 149, 193, 204 |
| Eam1104I | CTCTTC | 1 cut(s) | 94 |
| EarI | CTCTTC | 1 cut(s) | 94 |
| EciI | GGCGGA | 1 cut(s) | 312 |
| Eco130I | CCWWGG | 2 cut(s) | 297, 329 |
| Eco24I | GRGCYC | 1 cut(s) | 314 |
| Eco31I | GGTCTC | 1 cut(s) | 24 |
| Eco47I | GGWCC | 2 cut(s) | 137, 180 |
| Eco88I | CYCGRG | 1 cut(s) | 14 |
| EcoO109I | RGGNCCY | 2 cut(s) | 180, 311 |
| EcoRII | CCWGG | 1 cut(s) | 257 |
| EcoT14I | CCWWGG | 2 cut(s) | 297, 329 |
| EcoT38I | GRGCYC | 1 cut(s) | 314 |
| ErhI | CCWWGG | 2 cut(s) | 297, 329 |
| FaeI | CATG | 1 cut(s) | 301 |
| FaiI | YATR | 1 cut(s) | 299 |
| FatI | CATG | 1 cut(s) | 297 |
| FriOI | GRGCYC | 1 cut(s) | 314 |
| GsaI | CCCAGC | 1 cut(s) | 116 |
| GsuI | CTGGAG | 1 cut(s) | 130 |
| HaeIII | GGCC | 3 cut(s) | 63, 312, 347 |
| HapII | CCGG | 3 cut(s) | 52, 135, 364 |
| Hin1II | CATG | 1 cut(s) | 301 |
| HindIII | AAGCTT | 1 cut(s) | 26 |
| HinfI | GANTC | 3 cut(s) | 293, 319, 340 |
| HpaII | CCGG | 3 cut(s) | 52, 135, 364 |
| Hpy166II | GTNNAC | 1 cut(s) | 369 |
| Hpy188I | TCNGA | 2 cut(s) | 128, 190 |
| Hpy188III | TCNNGA | 3 cut(s) | 52, 147, 197 |
| Hpy8I | GTNNAC | 1 cut(s) | 369 |
| Hpy99I | CGWCG | 1 cut(s) | 194 |
| HpyAV | CCTTC | 2 cut(s) | 181, 193 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 221, 398 |
| Hsp92II | CATG | 1 cut(s) | 301 |
| Kpn2I | TCCGGA | 1 cut(s) | 51 |
| Kzo9I | GATC | 5 cut(s) | 121, 128, 149, 193, 204 |
| MaeIII | GTNAC | 1 cut(s) | 197 |
| MalI | GATC | 5 cut(s) | 123, 130, 151, 195, 206 |
| MboI | GATC | 5 cut(s) | 121, 128, 149, 193, 204 |
| MflI | RGATCY | 2 cut(s) | 128, 204 |
| MhlI | GDGCHC | 1 cut(s) | 314 |
| MluCI | AATT | 3 cut(s) | 166, 271, 278 |
| MmeI | TCCRAC | 1 cut(s) | 213 |
| MnlI | CCTC | 6 cut(s) | 59, 97, 151, 154, 172, 336 |
| MroI | TCCGGA | 1 cut(s) | 51 |
| MroXI | GAANNNNTTC | 1 cut(s) | 242 |
| MseI | TTAA | 2 cut(s) | 24, 403 |
| MslI | CAYNNNNRTG | 1 cut(s) | 302 |
| MspCI | CTTAAG | 1 cut(s) | 23 |
| MspI | CCGG | 3 cut(s) | 52, 135, 364 |
| MspR9I | CCNGG | 1 cut(s) | 259 |
| MvaI | CCWGG | 1 cut(s) | 259 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 221, 398 |
| NcoI | CCATGG | 1 cut(s) | 297 |
| NdeII | GATC | 5 cut(s) | 121, 128, 149, 193, 204 |
| NlaIII | CATG | 1 cut(s) | 301 |
| NlaIV | GGNNCC | 5 cut(s) | 64, 139, 181, 312, 313 |
| NmuCI | GTSAC | 1 cut(s) | 197 |
| NspV | TTCGAA | 1 cut(s) | 210 |
| PdmI | GAANNNNTTC | 1 cut(s) | 242 |
| PfeI | GAWTC | 3 cut(s) | 293, 319, 340 |
| Ple19I | CGATCG | 1 cut(s) | 196 |
| PpuMI | RGGWCCY | 1 cut(s) | 180 |
| Psp5II | RGGWCCY | 1 cut(s) | 180 |
| Psp6I | CCWGG | 1 cut(s) | 257 |
| PspFI | CCCAGC | 1 cut(s) | 112 |
| PspGI | CCWGG | 1 cut(s) | 257 |
| PspN4I | GGNNCC | 5 cut(s) | 64, 139, 181, 312, 313 |
| PspOMI | GGGCCC | 1 cut(s) | 310 |
| PspPI | GGNCC | 6 cut(s) | 62, 137, 180, 310, 311, 346 |
| PspPPI | RGGWCCY | 1 cut(s) | 180 |
| PsuI | RGATCY | 2 cut(s) | 128, 204 |
| PvuI | CGATCG | 1 cut(s) | 196 |
| RseI | CAYNNNNRTG | 1 cut(s) | 302 |
| SaqAI | TTAA | 2 cut(s) | 24, 403 |
| Sau3AI | GATC | 5 cut(s) | 121, 128, 149, 193, 204 |
| Sau96I | GGNCC | 6 cut(s) | 62, 137, 180, 310, 311, 346 |
| ScrFI | CCNGG | 1 cut(s) | 259 |
| SduI | GDGCHC | 1 cut(s) | 314 |
| SetI | ASST | 4 cut(s) | 30, 118, 164, 335 |
| SfuI | TTCGAA | 1 cut(s) | 210 |
| SinI | GGWCC | 2 cut(s) | 137, 180 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 302 |
| SmlI | CTYRAG | 1 cut(s) | 23 |
| SmoI | CTYRAG | 1 cut(s) | 23 |
| Sse9I | AATT | 3 cut(s) | 166, 271, 278 |
| SsiI | CCGC | 2 cut(s) | 249, 323 |
| StyD4I | CCNGG | 1 cut(s) | 257 |
| StyI | CCWWGG | 2 cut(s) | 297, 329 |
| TaqI | TCGA | 4 cut(s) | 31, 120, 210, 356 |
| TasI | AATT | 3 cut(s) | 166, 271, 278 |
| TfiI | GAWTC | 3 cut(s) | 293, 319, 340 |
| Tru1I | TTAA | 2 cut(s) | 24, 403 |
| Tru9I | TTAA | 2 cut(s) | 24, 403 |
| TseFI | GTSAC | 1 cut(s) | 197 |
| Tsp45I | GTSAC | 1 cut(s) | 197 |
| Vha464I | CTTAAG | 1 cut(s) | 23 |
| VpaK11BI | GGWCC | 2 cut(s) | 137, 180 |
| XapI | RAATTY | 1 cut(s) | 278 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 304 |
| XmnI | GAANNNNTTC | 1 cut(s) | 242 |