Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0009742

Physical Location & Seq

Genomic Coordinates Forward (+)

10426385 .. 10426746

Gene Structure 362 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG054600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 362 bp

ATGGATCCGCAAGACCCAATGCCCCTGAAAACCCACTTCGTCTCCTCCACCGATTCTCCCGAGTTCACTCACCTAACCACCTCCTTGACTCTCTCCGCCATCATTTCCCTTAACGCCAAGTGGAATCCCCTCCGCTCCCACCACCCCACTTACCCAACCGTCCCTCTCCTCCAACTTGCCTGCCAACTCGGCCGCGAACTAGCCTGCGACTCAGTCGTCGTCGTCTTCCTACTCGACTGGCCCTCTTCCAGATCAACTCGCACCTCCAATTCCTTCGACGGGTCCTTCTCCAACGATCACGACCCGATCTTCGAAGCCCTGAAAGCCCAAGACTTTGAGAAGATCTTAGGCAGCTCGGCCAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1 Mut7-C

Protein Analysis

120

Amino Acids

13.27

Weight (kDa)

5.33

Isoelectric Point (pI)

56.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009742)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008433 RLG00000009204 RLG00000022305 RLG00000022729
rosa_multiflora	Rmu_sc0004660.1_g000015 Rmu_sc0027128.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433770 Rroxscaffold_4G00328040 Rroxscaffold_7G00174430
rosa_rugosa	Rorug02G0120600
rosa_samantha	Rh1BG041000 Rh1CG054600 Rh2CG176100 Rh2CG370700 Rh3AG328800 Rh4AG061900 Rh4BG059500 Rh4CG065200 Rh5AG130900 Rh5DG131000 Rh6CG359500 Rh7CG314700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	215
AccBSI	CCGCTC	1 cut(s)	135
AccII	CGCG	1 cut(s)	195
AciI	CCGC	4 cut(s)	8, 96, 133, 193
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	2 cut(s)	190, 357
AfiI	CCNNNNNNNGG	1 cut(s)	279
AluBI	AGCT	1 cut(s)	354
AluI	AGCT	1 cut(s)	354
Alw26I	GTCTC	1 cut(s)	46
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	59
AoxI	GGCC	3 cut(s)	190, 239, 357
ApeKI	GCWGC	1 cut(s)	351
ArsI	GACNNNNNNTTYG	2 cut(s)	293, 325
AspS9I	GGNCC	2 cut(s)	240, 282
AsuHPI	GGTGA	1 cut(s)	62
AsuII	TTCGAA	1 cut(s)	312
AvaI	CYCGRG	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	282
BamHI	GGATCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	217
BccI	CCATC	1 cut(s)	107
BcoDI	GTCTC	1 cut(s)	46
BfaI	CTAG	1 cut(s)	200
BglI	GCCNNNNNGGC	1 cut(s)	189
BglII	AGATCT	1 cut(s)	342
BisI	GCNGC	2 cut(s)	193, 352
BlsI	GCNGC	2 cut(s)	194, 353
Bme18I	GGWCC	1 cut(s)	282
BmeT110I	CYCGRG	1 cut(s)	59
BmgT120I	GGNCC	2 cut(s)	240, 282
BmiI	GGNNCC	2 cut(s)	6, 283
BpiI	GAAGAC	1 cut(s)	217
Bpu14I	TTCGAA	1 cut(s)	312
BsaXI	ACNNNNNCTCC	4 cut(s)	26, 40, 56, 70
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
Bse1I	ACTGG	1 cut(s)	242
BseLI	CCNNNNNNNGG	1 cut(s)	279
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	1 cut(s)	242
BseRI	GAGGAG	2 cut(s)	34, 158
BseX3I	CGGCCG	1 cut(s)	190
Bsh1236I	CGCG	1 cut(s)	195
Bsh1285I	CGRYCG	1 cut(s)	193
BshFI	GGCC	3 cut(s)	192, 241, 359
BsiEI	CGRYCG	1 cut(s)	193
BsiHKCI	CYCGRG	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	279
BsmAI	GTCTC	1 cut(s)	46
BsmBI	CGTCTC	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	146
BsnI	GGCC	3 cut(s)	192, 241, 359
BsoBI	CYCGRG	1 cut(s)	59
Bsp119I	TTCGAA	1 cut(s)	312
Bsp143I	GATC	5 cut(s)	4, 251, 295, 306, 342
BspACI	CCGC	4 cut(s)	8, 96, 133, 193
BspANI	GGCC	3 cut(s)	192, 241, 359
BspCNI	CTCAG	1 cut(s)	224
BspFNI	CGCG	1 cut(s)	195
BspLI	GGNNCC	2 cut(s)	6, 283
BspPI	GGATC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	312
BsrBI	CCGCTC	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	242
BssMI	GATC	5 cut(s)	4, 251, 295, 306, 342
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	1 cut(s)	250
BstBI	TTCGAA	1 cut(s)	312
BstC8I	GCNNGC	2 cut(s)	181, 205
BstDEI	CTNAG	2 cut(s)	211, 346
BstFNI	CGCG	1 cut(s)	195
BstKTI	GATC	5 cut(s)	7, 254, 298, 309, 345
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	5 cut(s)	4, 251, 295, 306, 342
BstMCI	CGRYCG	1 cut(s)	193
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 323
BstUI	CGCG	1 cut(s)	195
BstV2I	GAAGAC	1 cut(s)	217
BstX2I	RGATCY	2 cut(s)	4, 342
BstYI	RGATCY	2 cut(s)	4, 342
BstZI	CGGCCG	1 cut(s)	190
BsuRI	GGCC	3 cut(s)	192, 241, 359
Cac8I	GCNNGC	2 cut(s)	181, 205
Cfr13I	GGNCC	2 cut(s)	240, 282
CviJI	RGCY	7 cut(s)	192, 203, 241, 317, 326, 354, 359
CviKI_1	RGCY	7 cut(s)	192, 203, 241, 317, 326, 354, 359
DdeI	CTNAG	2 cut(s)	211, 346
DpnI	GATC	5 cut(s)	6, 253, 297, 308, 344
DpnII	GATC	5 cut(s)	4, 251, 295, 306, 342
DrdI	GACNNNNNNGTC	1 cut(s)	215
DseDI	GACNNNNNNGTC	1 cut(s)	215
EaeI	YGGCCR	2 cut(s)	190, 357
EagI	CGGCCG	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
EciI	GGCGGA	1 cut(s)	85
EclXI	CGGCCG	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	282
Eco52I	CGGCCG	1 cut(s)	190
Eco88I	CYCGRG	1 cut(s)	59
EcoO109I	RGGNCCY	1 cut(s)	282
Esp3I	CGTCTC	1 cut(s)	46
FaqI	GGGAC	1 cut(s)	146
Fnu4HI	GCNGC	2 cut(s)	193, 352
Fsp4HI	GCNGC	2 cut(s)	193, 352
FspBI	CTAG	1 cut(s)	200
GluI	GCNGC	2 cut(s)	193, 352
HaeIII	GGCC	3 cut(s)	192, 241, 359
HinfI	GANTC	4 cut(s)	53, 88, 124, 209
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188III	TCNNGA	3 cut(s)	59, 249, 299
Hpy8I	GTNNAC	1 cut(s)	66
Hpy99I	CGWCG	3 cut(s)	221, 224, 281
HpyAV	CCTTC	2 cut(s)	283, 295
HpyCH4III	ACNGT	1 cut(s)	160
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 323
HpyF3I	CTNAG	2 cut(s)	211, 346
Kzo9I	GATC	5 cut(s)	4, 251, 295, 306, 342
LmnI	GCTCC	1 cut(s)	140
LpnPI	CCDG	6 cut(s)	38, 193, 217, 223, 262, 332
MaeI	CTAG	1 cut(s)	200
MalI	GATC	5 cut(s)	6, 253, 297, 308, 344
MbiI	CCGCTC	1 cut(s)	135
MboI	GATC	5 cut(s)	4, 251, 295, 306, 342
MboII	GAAGA	4 cut(s)	217, 237, 301, 352
MflI	RGATCY	2 cut(s)	4, 342
MluCI	AATT	1 cut(s)	268
MlyI	GAGTC	2 cut(s)	82, 203
MmeI	TCCRAC	2 cut(s)	196, 315
MnlI	CCTC	7 cut(s)	55, 91, 140, 174, 179, 253, 274
MseI	TTAA	1 cut(s)	111
MvnI	CGCG	1 cut(s)	195
MwoI	GCNNNNNNNGC	2 cut(s)	189, 323
NdeII	GATC	5 cut(s)	4, 251, 295, 306, 342
NlaIV	GGNNCC	2 cut(s)	6, 283
NmeAIII	GCCGAG	2 cut(s)	168, 335
NspV	TTCGAA	1 cut(s)	312
PfeI	GAWTC	2 cut(s)	53, 124
PflFI	GACNNNGTC	1 cut(s)	212
PkrI	GCNGC	2 cut(s)	194, 353
PleI	GAGTC	2 cut(s)	82, 203
PpsI	GAGTC	2 cut(s)	82, 203
PpuMI	RGGWCCY	1 cut(s)	282
Psp5II	RGGWCCY	1 cut(s)	282
PspN4I	GGNNCC	2 cut(s)	6, 283
PspPI	GGNCC	2 cut(s)	240, 282
PspPPI	RGGWCCY	1 cut(s)	282
PsuI	RGATCY	2 cut(s)	4, 342
PsyI	GACNNNGTC	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	2 cut(s)	193, 352
Sau3AI	GATC	5 cut(s)	4, 251, 295, 306, 342
Sau96I	GGNCC	2 cut(s)	240, 282
SchI	GAGTC	2 cut(s)	82, 203
SetI	ASST	4 cut(s)	75, 83, 266, 356
SfuI	TTCGAA	1 cut(s)	312
SinI	GGWCC	1 cut(s)	282
Sse9I	AATT	1 cut(s)	268
SsiI	CCGC	4 cut(s)	8, 96, 133, 193
SspMI	CTAG	1 cut(s)	200
TaaI	ACNGT	1 cut(s)	160
TaqI	TCGA	3 cut(s)	234, 276, 312
TasI	AATT	1 cut(s)	268
TauI	GCSGC	1 cut(s)	195
TfiI	GAWTC	2 cut(s)	53, 124
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TseI	GCWGC	1 cut(s)	351
Tth111I	GACNNNGTC	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	282
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.