Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009742

Physical Location & Seq

Genomic Coordinates Forward (+)

82426546 .. 82429053

Gene Structure 2508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022305

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGAATTCAGAGGTGTGTCAGTGGAGCTCTGCGCCGGTTGGATTGTCGGAGTCGATGGAGAGCAGCTTAATCCGGTTTGGGGAGTTCGCTGAGAAACCAAACCTCCGGACTTGCTTCTCCGATTACAGTAATGCTCGCTTCAACATCTACAATCACAGATCTGCCCCAATGTCTTTTTTTTTTTTTTCTTCTTCAAAGCCCGCAGCTTTTGATCTCGGATCCACCACACCCTCCTCCATATCAACTCGCACCTCCAATTCCTTCAACGGGTCATTCTCGGACGATCGCGACCCACTCTTCAGAGTCCCGAAAGCCCAAGACTTTGAGAACATCTTCGGTGGCTCAGCTAGGTTCTCCAGCAATTCCAAAGCTTTCAATTTAGATTCCATCTACAGTGGTACTGTGGCGCACAAATTCCGGAACCTGAAGCTTATTTTCGAGCTTGATATCAGTAACAATCACTTCATTGGGAAGTTCCCGCATGTTGTGCTTCAGCAACGGGAGCTGAAATTCTTGGATATGAGGTTTAATGGGTTCAATGGGAGTGTGCTGAAGGAGCTGTTTGACAATGACTTGGATGCTATTTTCATCATCCACAATCGGTTCGGGTTCAATCTGCCGGATAATTTTAGTAACACGCCAGTCTCCGTCATCATTTTGGCCAACAACAAGTTGCATGTTGTGTTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005199 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0009505 GO:0009506 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8

Protein Analysis

231

Amino Acids

26.01

Weight (kDa)

7.02

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009742)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008433 RLG00000009204 RLG00000022305 RLG00000022729
rosa_multiflora	Rmu_sc0004660.1_g000015 Rmu_sc0027128.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433770 Rroxscaffold_4G00328040 Rroxscaffold_7G00174430
rosa_rugosa	Rorug02G0120600
rosa_samantha	Rh1BG041000 Rh1CG054600 Rh2CG176100 Rh2CG370700 Rh3AG328800 Rh4AG061900 Rh4BG059500 Rh4CG065200 Rh5AG130900 Rh5DG131000 Rh6CG359500 Rh7CG314700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	288
AccIII	TCCGGA	2 cut(s)	105, 417
AciI	CCGC	2 cut(s)	201, 479
AclWI	GGATC	2 cut(s)	213, 226
AcoI	YGGCCR	1 cut(s)	660
AcsI	RAATTY	3 cut(s)	4, 413, 509
AcuI	CTGAAG	4 cut(s)	283, 446, 476, 572
AfaI	GTAC	1 cut(s)	400
AfiI	CCNNNNNNNGG	2 cut(s)	79, 267
AgsI	TTSAA	6 cut(s)	142, 195, 265, 376, 538, 613
AluBI	AGCT	9 cut(s)	27, 66, 206, 347, 371, 430, 442, 505, 559
AluI	AGCT	9 cut(s)	27, 66, 206, 347, 371, 430, 442, 505, 559
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	1 cut(s)	649
AlwI	GGATC	2 cut(s)	213, 226
Aor13HI	TCCGGA	2 cut(s)	105, 417
AoxI	GGCC	1 cut(s)	660
ApeKI	GCWGC	2 cut(s)	63, 203
ApoI	RAATTY	3 cut(s)	4, 413, 509
Asp700I	GAANNNNTTC	1 cut(s)	332
AspLEI	GCGC	2 cut(s)	34, 409
BalI	TGGCCA	1 cut(s)	662
BamHI	GGATCC	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	2 cut(s)	75, 215
BccI	CCATC	2 cut(s)	49, 395
BcoDI	GTCTC	1 cut(s)	649
BfaI	CTAG	1 cut(s)	348
BfmI	CTRYAG	1 cut(s)	391
BglII	AGATCT	1 cut(s)	158
BisI	GCNGC	2 cut(s)	64, 204
BlpI	GCTNAGC	1 cut(s)	343
BlsI	GCNGC	2 cut(s)	65, 205
BmiI	GGNNCC	2 cut(s)	220, 422
BmsI	GCATC	1 cut(s)	568
BpmI	CTGGAG	1 cut(s)	340
Bpu1102I	GCTNAGC	1 cut(s)	343
BsaWI	WCCGGW	3 cut(s)	72, 105, 417
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 267
Bse118I	RCCGGY	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	641
BseAI	TCCGGA	2 cut(s)	105, 417
BseGI	GGATG	2 cut(s)	583, 591
BseLI	CCNNNNNNNGG	2 cut(s)	79, 267
BseMII	CTCAG	2 cut(s)	81, 357
BseNI	ACTGG	1 cut(s)	641
BseRI	GAGGAG	1 cut(s)	223
BseXI	GCAGC	2 cut(s)	75, 215
Bsh1236I	CGCG	1 cut(s)	288
Bsh1285I	CGRYCG	1 cut(s)	286
BshFI	GGCC	1 cut(s)	662
BsiEI	CGRYCG	1 cut(s)	286
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	5 cut(s)	35, 73, 106, 418, 620
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	2 cut(s)	79, 267
BsmAI	GTCTC	1 cut(s)	649
BsmFI	GGGAC	1 cut(s)	290
BsnI	GGCC	1 cut(s)	662
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp13I	TCCGGA	2 cut(s)	105, 417
Bsp143I	GATC	4 cut(s)	158, 211, 218, 283
Bsp1720I	GCTNAGC	1 cut(s)	343
Bsp68I	TCGCGA	1 cut(s)	288
BspACI	CCGC	2 cut(s)	201, 479
BspANI	GGCC	1 cut(s)	662
BspCNI	CTCAG	2 cut(s)	82, 356
BspEI	TCCGGA	2 cut(s)	105, 417
BspFNI	CGCG	1 cut(s)	288
BspLI	GGNNCC	2 cut(s)	220, 422
BspPI	GGATC	2 cut(s)	213, 226
BsrFI	RCCGGY	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	641
BssAI	RCCGGY	1 cut(s)	34
BssMI	GATC	4 cut(s)	158, 211, 218, 283
Bst4CI	ACNGT	3 cut(s)	128, 395, 403
Bst6I	CTCTTC	1 cut(s)	302
BstAPI	GCANNNNNTGC	1 cut(s)	487
BstC8I	GCNNGC	2 cut(s)	136, 201
BstDEI	CTNAG	2 cut(s)	90, 343
BstF5I	GGATG	2 cut(s)	583, 591
BstFNI	CGCG	1 cut(s)	288
BstHHI	GCGC	2 cut(s)	34, 409
BstKTI	GATC	4 cut(s)	161, 214, 221, 286
BstMAI	GTCTC	1 cut(s)	649
BstMBI	GATC	4 cut(s)	158, 211, 218, 283
BstMCI	CGRYCG	1 cut(s)	286
BstMWI	GCNNNNNNNGC	3 cut(s)	487, 502, 556
BstNSI	RCATGY	2 cut(s)	485, 680
BstSFI	CTRYAG	1 cut(s)	391
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	2 cut(s)	75, 215
BstX2I	RGATCY	2 cut(s)	158, 218
BstYI	RGATCY	2 cut(s)	158, 218
BsuRI	GGCC	1 cut(s)	662
BtsCI	GGATG	2 cut(s)	583, 591
BtsIMutI	CAGTG	2 cut(s)	26, 400
BtuMI	TCGCGA	1 cut(s)	288
Cac8I	GCNNGC	2 cut(s)	136, 201
CfoI	GCGC	2 cut(s)	34, 409
Cfr10I	RCCGGY	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	399
CviAII	CATG	2 cut(s)	482, 677
CviQI	GTAC	1 cut(s)	399
DdeI	CTNAG	2 cut(s)	90, 343
DpnI	GATC	4 cut(s)	160, 213, 220, 285
DpnII	GATC	4 cut(s)	158, 211, 218, 283
EaeI	YGGCCR	1 cut(s)	660
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
Ecl136II	GAGCTC	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	29
Eco32I	GATATC	1 cut(s)	448
Eco53kI	GAGCTC	1 cut(s)	27
Eco57I	CTGAAG	4 cut(s)	283, 446, 476, 572
EcoICRI	GAGCTC	1 cut(s)	27
EcoRI	GAATTC	1 cut(s)	4
EcoRV	GATATC	1 cut(s)	448
EcoT38I	GRGCYC	1 cut(s)	29
FaeI	CATG	2 cut(s)	485, 680
FaiI	YATR	4 cut(s)	239, 483, 521, 678
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	2 cut(s)	481, 676
FauI	CCCGC	2 cut(s)	208, 486
Fnu4HI	GCNGC	2 cut(s)	64, 204
FokI	GGATG	2 cut(s)	578, 590
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	2 cut(s)	64, 204
FspBI	CTAG	1 cut(s)	348
GlaI	GCGC	2 cut(s)	33, 408
GluI	GCNGC	2 cut(s)	64, 204
GsuI	CTGGAG	1 cut(s)	340
HaeIII	GGCC	1 cut(s)	662
HapII	CCGG	5 cut(s)	35, 73, 106, 418, 620
HhaI	GCGC	2 cut(s)	34, 409
Hin1II	CATG	2 cut(s)	485, 680
Hin6I	GCGC	2 cut(s)	32, 407
HinP1I	GCGC	2 cut(s)	32, 407
HindIII	AAGCTT	2 cut(s)	369, 428
HinfI	GANTC	3 cut(s)	50, 303, 383
HpaII	CCGG	5 cut(s)	35, 73, 106, 418, 620
Hpy188I	TCNGA	6 cut(s)	10, 49, 121, 218, 280, 302
Hpy188III	TCNNGA	4 cut(s)	106, 287, 307, 418
HpyAV	CCTTC	2 cut(s)	271, 547
HpyCH4III	ACNGT	3 cut(s)	128, 395, 403
HpyCH4V	TGCA	1 cut(s)	676
HpyF10VI	GCNNNNNNNGC	3 cut(s)	487, 502, 556
HpyF3I	CTNAG	2 cut(s)	90, 343
Hsp92II	CATG	2 cut(s)	485, 680
HspAI	GCGC	2 cut(s)	32, 407
Kpn2I	TCCGGA	2 cut(s)	105, 417
Kzo9I	GATC	4 cut(s)	158, 211, 218, 283
LmnI	GCTCC	3 cut(s)	24, 502, 556
LpnPI	CCDG	8 cut(s)	48, 86, 119, 370, 431, 437, 633, 654
Lsp1109I	GCAGC	2 cut(s)	75, 215
LweI	GCATC	1 cut(s)	568
MaeI	CTAG	1 cut(s)	348
MaeIII	GTNAC	2 cut(s)	452, 632
MalI	GATC	4 cut(s)	160, 213, 220, 285
MboI	GATC	4 cut(s)	158, 211, 218, 283
MboII	GAAGA	4 cut(s)	180, 183, 289, 325
MflI	RGATCY	2 cut(s)	158, 218
MhlI	GDGCHC	1 cut(s)	29
MlsI	TGGCCA	1 cut(s)	662
MluCI	AATT	7 cut(s)	4, 256, 361, 376, 413, 509, 625
MluNI	TGGCCA	1 cut(s)	662
MlyI	GAGTC	2 cut(s)	59, 312
MmeI	TCCRAC	2 cut(s)	19, 27
MnlI	CCTC	6 cut(s)	4, 113, 241, 244, 262, 516
Mox20I	TGGCCA	1 cut(s)	662
MroI	TCCGGA	2 cut(s)	105, 417
MroXI	GAANNNNTTC	1 cut(s)	332
MscI	TGGCCA	1 cut(s)	662
MseI	TTAA	2 cut(s)	68, 528
Msp20I	TGGCCA	1 cut(s)	662
MspI	CCGG	5 cut(s)	35, 73, 106, 418, 620
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	3 cut(s)	487, 502, 556
NdeII	GATC	4 cut(s)	158, 211, 218, 283
NlaIII	CATG	2 cut(s)	485, 680
NlaIV	GGNNCC	2 cut(s)	220, 422
NruI	TCGCGA	1 cut(s)	288
NspI	RCATGY	2 cut(s)	485, 680
PdmI	GAANNNNTTC	1 cut(s)	332
PfeI	GAWTC	1 cut(s)	383
PkrI	GCNGC	2 cut(s)	65, 205
Ple19I	CGATCG	1 cut(s)	286
PleI	GAGTC	2 cut(s)	58, 311
PpsI	GAGTC	2 cut(s)	58, 311
Psp124BI	GAGCTC	1 cut(s)	29
PspN4I	GGNNCC	2 cut(s)	220, 422
PsuI	RGATCY	2 cut(s)	158, 218
PvuI	CGATCG	1 cut(s)	286
RruI	TCGCGA	1 cut(s)	288
RsaI	GTAC	1 cut(s)	400
RsaNI	GTAC	1 cut(s)	399
SacI	GAGCTC	1 cut(s)	29
SaqAI	TTAA	2 cut(s)	68, 528
SatI	GCNGC	2 cut(s)	64, 204
Sau3AI	GATC	4 cut(s)	158, 211, 218, 283
SchI	GAGTC	2 cut(s)	59, 312
SduI	GDGCHC	1 cut(s)	29
SfaNI	GCATC	1 cut(s)	568
SfcI	CTRYAG	1 cut(s)	391
Sse9I	AATT	7 cut(s)	4, 256, 361, 376, 413, 509, 625
SsiI	CCGC	2 cut(s)	201, 479
SspMI	CTAG	1 cut(s)	348
SstI	GAGCTC	1 cut(s)	29
TaaI	ACNGT	3 cut(s)	128, 395, 403
TaqI	TCGA	2 cut(s)	53, 438
TasI	AATT	7 cut(s)	4, 256, 361, 376, 413, 509, 625
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	2 cut(s)	68, 528
Tru9I	TTAA	2 cut(s)	68, 528
TscAI	CASTG	2 cut(s)	26, 400
TseI	GCWGC	2 cut(s)	63, 203
TspDTI	ATGAA	3 cut(s)	17, 454, 577
TspGWI	ACGGA	1 cut(s)	637
TspRI	CASTG	2 cut(s)	26, 400
XapI	RAATTY	3 cut(s)	4, 413, 509
XceI	RCATGY	2 cut(s)	485, 680
XmnI	GAANNNNTTC	1 cut(s)	332
XspI	CTAG	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.