No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_laevigata | RLG00000008433 RLG00000009204 RLG00000022305 RLG00000022729 |
| rosa_multiflora | Rmu_sc0004660.1_g000015 Rmu_sc0027128.1_g000001 |
| rosa_roxburghii | Rroxscaffold_160G00433770 Rroxscaffold_4G00328040 Rroxscaffold_7G00174430 |
| rosa_rugosa | Rorug02G0120600 |
| rosa_samantha | Rh1BG041000 Rh1CG054600 Rh2CG176100 Rh2CG370700 Rh3AG328800 Rh4AG061900 Rh4BG059500 Rh4CG065200 Rh5AG130900 Rh5DG131000 Rh6CG359500 Rh7CG314700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 162 |
| AclWI | GGATC | 1 cut(s) | 184 |
| AcsI | RAATTY | 1 cut(s) | 81 |
| AfaI | GTAC | 1 cut(s) | 66 |
| AflIII | ACRYGT | 1 cut(s) | 227 |
| AgsI | TTSAA | 5 cut(s) | 33, 50, 80, 134, 261 |
| AjnI | CCWGG | 1 cut(s) | 147 |
| AluBI | AGCT | 2 cut(s) | 182, 248 |
| AluI | AGCT | 2 cut(s) | 182, 248 |
| AlwI | GGATC | 1 cut(s) | 184 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 310 |
| ApeKI | GCWGC | 3 cut(s) | 91, 182, 301 |
| ApoI | RAATTY | 1 cut(s) | 81 |
| AspLEI | GCGC | 1 cut(s) | 269 |
| BbvI | GCAGC | 2 cut(s) | 78, 169 |
| BccI | CCATC | 2 cut(s) | 151, 212 |
| BciT130I | CCWGG | 1 cut(s) | 149 |
| BfaI | CTAG | 3 cut(s) | 56, 68, 216 |
| BisI | GCNGC | 3 cut(s) | 92, 183, 302 |
| BlsI | GCNGC | 3 cut(s) | 93, 184, 303 |
| BmcAI | AGTACT | 1 cut(s) | 66 |
| Bme1390I | CCNGG | 1 cut(s) | 149 |
| BmrFI | CCNGG | 1 cut(s) | 149 |
| BmsI | GCATC | 1 cut(s) | 278 |
| BpuEI | CTTGAG | 1 cut(s) | 95 |
| Bse3DI | GCAATG | 2 cut(s) | 101, 296 |
| BseBI | CCWGG | 1 cut(s) | 149 |
| BseGI | GGATG | 1 cut(s) | 269 |
| BseMI | GCAATG | 2 cut(s) | 101, 296 |
| BseXI | GCAGC | 2 cut(s) | 78, 169 |
| Bsp143I | GATC | 1 cut(s) | 176 |
| BspPI | GGATC | 1 cut(s) | 184 |
| BsrDI | GCAATG | 2 cut(s) | 101, 296 |
| BssMI | GATC | 1 cut(s) | 176 |
| Bst2UI | CCWGG | 1 cut(s) | 149 |
| Bst4CI | ACNGT | 1 cut(s) | 172 |
| BstF5I | GGATG | 1 cut(s) | 269 |
| BstHHI | GCGC | 1 cut(s) | 269 |
| BstKTI | GATC | 1 cut(s) | 179 |
| BstMBI | GATC | 1 cut(s) | 176 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 307 |
| BstNI | CCWGG | 1 cut(s) | 149 |
| BstNSI | RCATGY | 1 cut(s) | 231 |
| BstSCI | CCNGG | 1 cut(s) | 147 |
| BstV1I | GCAGC | 2 cut(s) | 78, 169 |
| BtsCI | GGATG | 1 cut(s) | 269 |
| CaiI | CAGNNNCTG | 1 cut(s) | 310 |
| CfoI | GCGC | 1 cut(s) | 269 |
| Csp6I | GTAC | 1 cut(s) | 65 |
| CviAII | CATG | 1 cut(s) | 228 |
| CviJI | RGCY | 4 cut(s) | 91, 182, 248, 310 |
| CviKI_1 | RGCY | 4 cut(s) | 91, 182, 248, 310 |
| CviQI | GTAC | 1 cut(s) | 65 |
| DpnI | GATC | 1 cut(s) | 178 |
| DpnII | GATC | 1 cut(s) | 176 |
| EcoRII | CCWGG | 1 cut(s) | 147 |
| FaeI | CATG | 1 cut(s) | 231 |
| FaiI | YATR | 4 cut(s) | 167, 187, 211, 229 |
| FatI | CATG | 1 cut(s) | 227 |
| FblI | GTMKAC | 1 cut(s) | 162 |
| Fnu4HI | GCNGC | 3 cut(s) | 92, 183, 302 |
| FokI | GGATG | 1 cut(s) | 256 |
| Fsp4HI | GCNGC | 3 cut(s) | 92, 183, 302 |
| FspBI | CTAG | 3 cut(s) | 56, 68, 216 |
| GlaI | GCGC | 1 cut(s) | 268 |
| GluI | GCNGC | 3 cut(s) | 92, 183, 302 |
| HhaI | GCGC | 1 cut(s) | 269 |
| Hin1II | CATG | 1 cut(s) | 231 |
| Hin6I | GCGC | 1 cut(s) | 267 |
| HinP1I | GCGC | 1 cut(s) | 267 |
| Hpy166II | GTNNAC | 1 cut(s) | 163 |
| Hpy8I | GTNNAC | 1 cut(s) | 163 |
| HpyCH4III | ACNGT | 1 cut(s) | 172 |
| HpyCH4V | TGCA | 5 cut(s) | 94, 145, 185, 234, 301 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 307 |
| Hsp92II | CATG | 1 cut(s) | 231 |
| HspAI | GCGC | 1 cut(s) | 267 |
| Kzo9I | GATC | 1 cut(s) | 176 |
| LmnI | GCTCC | 1 cut(s) | 280 |
| LpnPI | CCDG | 5 cut(s) | 134, 161, 278, 288, 290 |
| Lsp1109I | GCAGC | 2 cut(s) | 78, 169 |
| LweI | GCATC | 1 cut(s) | 278 |
| MaeI | CTAG | 3 cut(s) | 56, 68, 216 |
| MaeIII | GTNAC | 2 cut(s) | 197, 223 |
| MalI | GATC | 1 cut(s) | 178 |
| MboI | GATC | 1 cut(s) | 176 |
| MluCI | AATT | 4 cut(s) | 27, 39, 75, 81 |
| MslI | CAYNNNNRTG | 1 cut(s) | 170 |
| MspA1I | CMGCKG | 1 cut(s) | 182 |
| MspR9I | CCNGG | 1 cut(s) | 149 |
| MvaI | CCWGG | 1 cut(s) | 149 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 307 |
| NdeII | GATC | 1 cut(s) | 176 |
| NlaIII | CATG | 1 cut(s) | 231 |
| NmuCI | GTSAC | 1 cut(s) | 223 |
| NspI | RCATGY | 1 cut(s) | 231 |
| PciI | ACATGT | 1 cut(s) | 227 |
| PkrI | GCNGC | 3 cut(s) | 93, 184, 303 |
| PscI | ACATGT | 1 cut(s) | 227 |
| Psp6I | CCWGG | 1 cut(s) | 147 |
| PspGI | CCWGG | 1 cut(s) | 147 |
| PstNI | CAGNNNCTG | 1 cut(s) | 310 |
| PvuII | CAGCTG | 1 cut(s) | 182 |
| RsaI | GTAC | 1 cut(s) | 66 |
| RsaNI | GTAC | 1 cut(s) | 65 |
| RseI | CAYNNNNRTG | 1 cut(s) | 170 |
| SatI | GCNGC | 3 cut(s) | 92, 183, 302 |
| Sau3AI | GATC | 1 cut(s) | 176 |
| ScaI | AGTACT | 1 cut(s) | 66 |
| ScrFI | CCNGG | 1 cut(s) | 149 |
| SetI | ASST | 2 cut(s) | 184, 250 |
| SfaNI | GCATC | 1 cut(s) | 278 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 170 |
| SmlI | CTYRAG | 1 cut(s) | 110 |
| SmoI | CTYRAG | 1 cut(s) | 110 |
| Sse9I | AATT | 4 cut(s) | 27, 39, 75, 81 |
| SspMI | CTAG | 3 cut(s) | 56, 68, 216 |
| StyD4I | CCNGG | 1 cut(s) | 147 |
| TaaI | ACNGT | 1 cut(s) | 172 |
| TasI | AATT | 4 cut(s) | 27, 39, 75, 81 |
| TatI | WGTACW | 1 cut(s) | 64 |
| TseFI | GTSAC | 1 cut(s) | 223 |
| TseI | GCWGC | 3 cut(s) | 91, 182, 301 |
| Tsp45I | GTSAC | 1 cut(s) | 223 |
| TspDTI | ATGAA | 1 cut(s) | 12 |
| XapI | RAATTY | 1 cut(s) | 81 |
| XceI | RCATGY | 1 cut(s) | 231 |
| XmiI | GTMKAC | 1 cut(s) | 162 |
| XspI | CTAG | 3 cut(s) | 56, 68, 216 |
| ZrmI | AGTACT | 1 cut(s) | 66 |