Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0009742

Physical Location & Seq

Genomic Coordinates Reverse (-)

48796149 .. 48797682

Gene Structure 1534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009204

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCATGGGACTGTCTCGATGTTACTGGCTCCAAAGCCAAGGCCAAGGAAGGAAAACTGAGGAGAGGAAAGATGGTCAAGCATCACATGCTTGACGACAAGGCAGCAGTAGCAGAGCCTGTGGGTCTGGGAGCTCCCAAAAGGAAGAAGAAGGCGGCTAAAAAGAAAAAGAAGAAGAGAGCTGAAAAGAAAAAGAAGAAGAAGAAAGAGAAAGATGAAGCTGCTGACAAGGACGAGAAAGACAAGAAGAAGAACGAGAAGAACGAGAAATCTACCCCAAAGCCCAAGTTAGTCAAGAGAGACCGAGGGAGGCGCCTCCTCTCGAGAAATGGAGTGACGTCGCCGCCGCCTCGGGCAAGTGATAGTAGTGGGTTTGATGACCTTCTCGGTGGGTTTGGCAAGGCTGAGCCGGCATTGTCGAAAAGCTCTAGCAAGGGTGTGCCGGCAGCTTTCGATGATTTTTTAACTGGGTTTGGAGCTAGTAGCAGCCCCCAATATGAAAGTACTAGTGTGGAGTTTGAATTAATGGTTAGTTATGTGAATGTTGCACTGTATATTGTGCGTCAAATTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0016020 GO:0016192 GO:0031982 GO:0043226 GO:0043227 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

21.02

Weight (kDa)

10.02

Isoelectric Point (pI)

39.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009742)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008433 RLG00000009204 RLG00000022305 RLG00000022729
rosa_multiflora	Rmu_sc0004660.1_g000015 Rmu_sc0027128.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433770 Rroxscaffold_4G00328040 Rroxscaffold_7G00174430
rosa_rugosa	Rorug02G0120600
rosa_samantha	Rh1BG041000 Rh1CG054600 Rh2CG176100 Rh2CG370700 Rh3AG328800 Rh4AG061900 Rh4BG059500 Rh4CG065200 Rh5AG130900 Rh5DG131000 Rh6CG359500 Rh7CG314700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	341
AccB1I	GGYRCC	1 cut(s)	312
AciI	CCGC	3 cut(s)	155, 344, 347
AcsI	RAATTY	1 cut(s)	567
AcyI	GRCGYC	2 cut(s)	313, 338
AfaI	GTAC	1 cut(s)	505
AgsI	TTSAA	1 cut(s)	521
AhlI	ACTAGT	1 cut(s)	506
AluBI	AGCT	6 cut(s)	134, 182, 221, 426, 449, 479
AluI	AGCT	6 cut(s)	134, 182, 221, 426, 449, 479
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	2 cut(s)	20, 294
AlwNI	CAGNNNCTG	1 cut(s)	119
Ama87I	CYCGRG	2 cut(s)	322, 351
AoxI	GGCC	1 cut(s)	42
ApeKI	GCWGC	4 cut(s)	104, 221, 446, 486
ApoI	RAATTY	1 cut(s)	567
AseI	ATTAAT	1 cut(s)	524
AspLEI	GCGC	1 cut(s)	315
AvaI	CYCGRG	2 cut(s)	322, 351
BanI	GGYRCC	1 cut(s)	312
BanII	GRGCYC	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	4 cut(s)	116, 208, 458, 498
BccI	CCATC	1 cut(s)	67
BcoDI	GTCTC	2 cut(s)	20, 294
BcuI	ACTAGT	1 cut(s)	506
BfaI	CTAG	3 cut(s)	429, 480, 507
BfoI	RGCGCY	1 cut(s)	316
BisI	GCNGC	7 cut(s)	105, 156, 222, 344, 347, 447, 487
BlpI	GCTNAGC	1 cut(s)	405
BlsI	GCNGC	7 cut(s)	106, 157, 223, 345, 348, 448, 488
BmcAI	AGTACT	1 cut(s)	505
BmeT110I	CYCGRG	2 cut(s)	322, 351
BmiI	GGNNCC	2 cut(s)	31, 314
BmrI	ACTGGG	1 cut(s)	477
BmsI	GCATC	1 cut(s)	91
BmuI	ACTGGG	1 cut(s)	477
Bpu1102I	GCTNAGC	1 cut(s)	405
BsaHI	GRCGYC	2 cut(s)	313, 338
BsaI	GGTCTC	1 cut(s)	294
BsaJI	CCNNGG	4 cut(s)	39, 45, 304, 350
Bse118I	RCCGGY	2 cut(s)	409, 442
Bse1I	ACTGG	2 cut(s)	31, 472
BseDI	CCNNGG	4 cut(s)	39, 45, 304, 350
BseMII	CTCAG	2 cut(s)	50, 396
BseNI	ACTGG	2 cut(s)	31, 472
BseRI	GAGGAG	2 cut(s)	76, 308
BseXI	GCAGC	4 cut(s)	116, 208, 458, 498
BshFI	GGCC	1 cut(s)	44
BshNI	GGYRCC	1 cut(s)	312
BsiHKAI	GWGCWC	1 cut(s)	136
BsiHKCI	CYCGRG	2 cut(s)	322, 351
BsiSI	CCGG	2 cut(s)	410, 443
BslFI	GGGAC	1 cut(s)	23
BsmAI	GTCTC	2 cut(s)	20, 294
BsmFI	GGGAC	1 cut(s)	23
BsnI	GGCC	1 cut(s)	44
Bso31I	GGTCTC	1 cut(s)	294
BsoBI	CYCGRG	2 cut(s)	322, 351
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp1720I	GCTNAGC	1 cut(s)	405
BspACI	CCGC	3 cut(s)	155, 344, 347
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	2 cut(s)	51, 397
BspLI	GGNNCC	2 cut(s)	31, 314
BspT107I	GGYRCC	1 cut(s)	312
BspTNI	GGTCTC	1 cut(s)	294
BsrFI	RCCGGY	2 cut(s)	409, 442
BsrI	ACTGG	2 cut(s)	31, 472
BssAI	RCCGGY	2 cut(s)	409, 442
BssECI	CCNNGG	4 cut(s)	39, 45, 304, 350
BssNI	GRCGYC	2 cut(s)	313, 338
BssT1I	CCWWGG	2 cut(s)	39, 45
Bst4CI	ACNGT	2 cut(s)	14, 552
Bst6I	CTCTTC	1 cut(s)	170
BstACI	GRCGYC	2 cut(s)	313, 338
BstAPI	GCANNNNNTGC	1 cut(s)	88
BstC8I	GCNNGC	2 cut(s)	411, 444
BstDEI	CTNAG	2 cut(s)	59, 405
BstH2I	RGCGCY	1 cut(s)	316
BstHHI	GCGC	1 cut(s)	315
BstMAI	GTCTC	2 cut(s)	20, 294
BstMWI	GCNNNNNNNGC	3 cut(s)	88, 110, 410
BstNSI	RCATGY	1 cut(s)	91
BstV1I	GCAGC	4 cut(s)	116, 208, 458, 498
BsuRI	GGCC	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	548
Cac8I	GCNNGC	2 cut(s)	411, 444
CaiI	CAGNNNCTG	1 cut(s)	119
CfoI	GCGC	1 cut(s)	315
Cfr10I	RCCGGY	2 cut(s)	409, 442
CseI	GACGC	1 cut(s)	551
Csp6I	GTAC	1 cut(s)	504
CviAII	CATG	2 cut(s)	6, 88
CviQI	GTAC	1 cut(s)	504
DdeI	CTNAG	2 cut(s)	59, 405
DinI	GGCGCC	1 cut(s)	314
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
Ecl136II	GAGCTC	1 cut(s)	134
Eco130I	CCWWGG	2 cut(s)	39, 45
Eco24I	GRGCYC	1 cut(s)	136
Eco31I	GGTCTC	1 cut(s)	294
Eco53kI	GAGCTC	1 cut(s)	134
Eco88I	CYCGRG	2 cut(s)	322, 351
EcoICRI	GAGCTC	1 cut(s)	134
EcoT14I	CCWWGG	2 cut(s)	39, 45
EcoT38I	GRGCYC	1 cut(s)	136
EgeI	GGCGCC	1 cut(s)	314
EheI	GGCGCC	1 cut(s)	314
ErhI	CCWWGG	2 cut(s)	39, 45
FaeI	CATG	2 cut(s)	9, 91
FaiI	YATR	6 cut(s)	7, 89, 498, 537, 555, 574
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	2 cut(s)	5, 87
Fnu4HI	GCNGC	7 cut(s)	105, 156, 222, 344, 347, 447, 487
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	7 cut(s)	105, 156, 222, 344, 347, 447, 487
FspBI	CTAG	3 cut(s)	429, 480, 507
GlaI	GCGC	1 cut(s)	314
GluI	GCNGC	7 cut(s)	105, 156, 222, 344, 347, 447, 487
HaeII	RGCGCY	1 cut(s)	316
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	2 cut(s)	410, 443
HgaI	GACGC	1 cut(s)	551
HhaI	GCGC	1 cut(s)	315
Hin1I	GRCGYC	2 cut(s)	313, 338
Hin1II	CATG	2 cut(s)	9, 91
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
HpaII	CCGG	2 cut(s)	410, 443
Hpy188III	TCNNGA	4 cut(s)	17, 295, 322, 324
Hpy99I	CGWCG	1 cut(s)	343
HpyAV	CCTTC	3 cut(s)	44, 145, 392
HpyCH4III	ACNGT	2 cut(s)	14, 552
HpyCH4IV	ACGT	1 cut(s)	338
HpyCH4V	TGCA	1 cut(s)	548
HpyF10VI	GCNNNNNNNGC	3 cut(s)	88, 110, 410
HpyF3I	CTNAG	2 cut(s)	59, 405
HpySE526I	ACGT	1 cut(s)	338
Hsp92I	GRCGYC	2 cut(s)	313, 338
Hsp92II	CATG	2 cut(s)	9, 91
HspAI	GCGC	1 cut(s)	313
KasI	GGCGCC	1 cut(s)	312
KroI	GCCGGC	2 cut(s)	409, 442
KroNI	GCCGGC	2 cut(s)	411, 444
LmnI	GCTCC	4 cut(s)	35, 131, 139, 476
LpnPI	CCDG	6 cut(s)	12, 113, 132, 423, 453, 456
Lsp1109I	GCAGC	4 cut(s)	116, 208, 458, 498
LweI	GCATC	1 cut(s)	91
MaeI	CTAG	3 cut(s)	429, 480, 507
MaeII	ACGT	1 cut(s)	338
MaeIII	GTNAC	2 cut(s)	22, 334
MhlI	GDGCHC	1 cut(s)	136
MluCI	AATT	2 cut(s)	521, 567
Mly113I	GGCGCC	1 cut(s)	313
MnlI	CCTC	7 cut(s)	54, 59, 299, 303, 326, 329, 360
MroNI	GCCGGC	2 cut(s)	409, 442
MseI	TTAA	2 cut(s)	464, 524
MspI	CCGG	2 cut(s)	410, 443
MwoI	GCNNNNNNNGC	3 cut(s)	88, 110, 410
NaeI	GCCGGC	2 cut(s)	411, 444
NarI	GGCGCC	1 cut(s)	313
NgoMIV	GCCGGC	2 cut(s)	409, 442
NlaIII	CATG	2 cut(s)	9, 91
NlaIV	GGNNCC	2 cut(s)	31, 314
NmuCI	GTSAC	1 cut(s)	334
NspI	RCATGY	1 cut(s)	91
PaeR7I	CTCGAG	1 cut(s)	322
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PdiI	GCCGGC	2 cut(s)	411, 444
PkrI	GCNGC	7 cut(s)	106, 157, 223, 345, 348, 448, 488
PluTI	GGCGCC	1 cut(s)	316
PshBI	ATTAAT	1 cut(s)	524
Psp124BI	GAGCTC	1 cut(s)	136
PspN4I	GGNNCC	2 cut(s)	31, 314
PstNI	CAGNNNCTG	1 cut(s)	119
RsaI	GTAC	1 cut(s)	505
RsaNI	GTAC	1 cut(s)	504
SacI	GAGCTC	1 cut(s)	136
SaqAI	TTAA	2 cut(s)	464, 524
SatI	GCNGC	7 cut(s)	105, 156, 222, 344, 347, 447, 487
ScaI	AGTACT	1 cut(s)	505
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	8 cut(s)	136, 184, 223, 341, 384, 428, 451, 481
SfaNI	GCATC	1 cut(s)	91
SfoI	GGCGCC	1 cut(s)	314
Sfr274I	CTCGAG	1 cut(s)	322
SlaI	CTCGAG	1 cut(s)	322
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
SpeI	ACTAGT	1 cut(s)	506
Sse9I	AATT	2 cut(s)	521, 567
SsiI	CCGC	3 cut(s)	155, 344, 347
SspDI	GGCGCC	1 cut(s)	312
SspMI	CTAG	3 cut(s)	429, 480, 507
SstI	GAGCTC	1 cut(s)	136
StyI	CCWWGG	2 cut(s)	39, 45
TaaI	ACNGT	2 cut(s)	14, 552
TaiI	ACGT	1 cut(s)	341
TaqI	TCGA	4 cut(s)	18, 323, 419, 453
TaqII	GACCGA	1 cut(s)	318
TasI	AATT	2 cut(s)	521, 567
TatI	WGTACW	1 cut(s)	503
TauI	GCSGC	3 cut(s)	158, 346, 349
Tru1I	TTAA	2 cut(s)	464, 524
Tru9I	TTAA	2 cut(s)	464, 524
TscAI	CASTG	1 cut(s)	555
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	4 cut(s)	104, 221, 446, 486
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	3 cut(s)	231, 513, 561
TspRI	CASTG	1 cut(s)	555
VspI	ATTAAT	1 cut(s)	524
XapI	RAATTY	1 cut(s)	567
XceI	RCATGY	1 cut(s)	91
XhoI	CTCGAG	1 cut(s)	322
XspI	CTAG	3 cut(s)	429, 480, 507
ZraI	GACGTC	1 cut(s)	339
ZrmI	AGTACT	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.