Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0009742

Physical Location & Seq

Genomic Coordinates Forward (+)

10748308 .. 10749568

Gene Structure 1261 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022729

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTTGATGTTGCTGGCGCGGAGTCTTGATCTCGTTTTGGGTGGAGTGGGGTCCGATGCCGAGGTTGGAGAGGAGTGCAGCGTTGTTTTAGACCCAATCCCCCTGAAAACCCACTTCATCTCGTCCACTGATTCTTCCGAGTTCACTCACCTACCGAGTGGAATCCCCTCCGCTCCCACCACCCCACTTACCCAATTGTCCCTCTCCTCCAACTTGCCTGCCAACTCGGCCGCGAACTCGCCGGCGACTCGGTCGTCTTCTTCCTGCTCGACTGGACCCTCCTCCAAATCAACTCACACCTCCAATTCCTTCGACGGGTCATTCTCAGACGATCGCGACCGGATCTTCAAAGCCCTAAAAGCCCAAACTTTGAGAAGATCTTCAGCTACTCGGCCAGGCGTTGCGGGGCAGAAGAGCTCCGCTGGAAACGATATTTTATCCGCAACAGTGACGTCACCGCCGCCTCGGGCAAGTGATAGTAGTGGGTTTGATAACCTTCTCGGTGGGTTTGGCAAGGCTAAGCTGGCATCGTCGAAAAGCTCTACAAGGGTATGCCGACAGCTTTCGATGATTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0016020 GO:0016192 GO:0031982 GO:0043226 GO:0043227 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

193

Amino Acids

19.77

Weight (kDa)

8.8

Isoelectric Point (pI)

53.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009742)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008433 RLG00000009204 RLG00000022305 RLG00000022729
rosa_multiflora	Rmu_sc0004660.1_g000015 Rmu_sc0027128.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433770 Rroxscaffold_4G00328040 Rroxscaffold_7G00174430
rosa_rugosa	Rorug02G0120600
rosa_samantha	Rh1BG041000 Rh1CG054600 Rh2CG176100 Rh2CG370700 Rh3AG328800 Rh4AG061900 Rh4BG059500 Rh4CG065200 Rh5AG130900 Rh5DG131000 Rh6CG359500 Rh7CG314700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	253
AatII	GACGTC	1 cut(s)	455
AccBSI	CCGCTC	1 cut(s)	173
AccII	CGCG	3 cut(s)	19, 233, 336
AciI	CCGC	8 cut(s)	19, 171, 231, 404, 420, 441, 458, 461
AclWI	GGATC	1 cut(s)	350
AcoI	YGGCCR	2 cut(s)	228, 392
AcuI	CTGAAG	1 cut(s)	366
AcyI	GRCGYC	1 cut(s)	452
AfiI	CCNNNNNNNGG	1 cut(s)	315
AgsI	TTSAA	1 cut(s)	349
AjnI	CCWGG	1 cut(s)	394
AluBI	AGCT	5 cut(s)	386, 417, 523, 540, 562
AluI	AGCT	5 cut(s)	386, 417, 523, 540, 562
Alw21I	GWGCWC	1 cut(s)	419
AlwI	GGATC	1 cut(s)	350
Ama87I	CYCGRG	1 cut(s)	465
AoxI	GGCC	2 cut(s)	228, 392
ApeKI	GCWGC	1 cut(s)	78
Asp700I	GAANNNNTTC	1 cut(s)	379
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	2 cut(s)	51, 275
AsuHPI	GGTGA	2 cut(s)	140, 447
AvaI	CYCGRG	1 cut(s)	465
AvaII	GGWCC	2 cut(s)	51, 275
BanII	GRGCYC	1 cut(s)	419
BbsI	GAAGAC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	419
BbvI	GCAGC	1 cut(s)	90
BciT130I	CCWGG	1 cut(s)	396
BglI	GCCNNNNNGGC	1 cut(s)	227
BglII	AGATCT	1 cut(s)	377
BisI	GCNGC	3 cut(s)	79, 231, 461
BlpI	GCTNAGC	1 cut(s)	519
BlsI	GCNGC	3 cut(s)	80, 232, 462
Bme1390I	CCNGG	1 cut(s)	396
Bme18I	GGWCC	2 cut(s)	51, 275
BmeT110I	CYCGRG	1 cut(s)	465
BmgT120I	GGNCC	2 cut(s)	51, 275
BmiI	GGNNCC	2 cut(s)	52, 277
BmrFI	CCNGG	1 cut(s)	396
BmsI	GCATC	2 cut(s)	46, 536
BpiI	GAAGAC	1 cut(s)	249
Bpu1102I	GCTNAGC	1 cut(s)	519
BsaHI	GRCGYC	1 cut(s)	452
BsaJI	CCNNGG	2 cut(s)	60, 464
BsaWI	WCCGGW	1 cut(s)	339
Bsc4I	CCNNNNNNNGG	1 cut(s)	315
Bse118I	RCCGGY	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	396
BseDI	CCNNGG	2 cut(s)	60, 464
BseLI	CCNNNNNNNGG	1 cut(s)	315
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	1 cut(s)	277
BseRI	GAGGAG	3 cut(s)	86, 196, 271
BseX3I	CGGCCG	1 cut(s)	228
BseXI	GCAGC	1 cut(s)	90
BsgI	GTGCAG	1 cut(s)	97
Bsh1236I	CGCG	3 cut(s)	19, 233, 336
Bsh1285I	CGRYCG	4 cut(s)	231, 254, 334, 340
BshFI	GGCC	2 cut(s)	230, 394
BsiEI	CGRYCG	4 cut(s)	231, 254, 334, 340
BsiHKAI	GWGCWC	1 cut(s)	419
BsiHKCI	CYCGRG	1 cut(s)	465
BsiSI	CCGG	2 cut(s)	242, 340
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	1 cut(s)	315
BsmFI	GGGAC	1 cut(s)	184
BsnI	GGCC	2 cut(s)	230, 394
BsoBI	CYCGRG	1 cut(s)	465
Bsp1286I	GDGCHC	1 cut(s)	419
Bsp143I	GATC	4 cut(s)	28, 331, 342, 377
Bsp1720I	GCTNAGC	1 cut(s)	519
Bsp68I	TCGCGA	1 cut(s)	336
BspACI	CCGC	8 cut(s)	19, 171, 231, 404, 420, 441, 458, 461
BspANI	GGCC	2 cut(s)	230, 394
BspCNI	CTCAG	1 cut(s)	338
BspFNI	CGCG	3 cut(s)	19, 233, 336
BspLI	GGNNCC	2 cut(s)	52, 277
BspPI	GGATC	1 cut(s)	350
BspQI	GCTCTTC	1 cut(s)	407
BsrBI	CCGCTC	1 cut(s)	173
BsrFI	RCCGGY	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	277
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	2 cut(s)	60, 464
BssMI	GATC	4 cut(s)	28, 331, 342, 377
BssNI	GRCGYC	1 cut(s)	452
Bst2UI	CCWGG	1 cut(s)	396
Bst4CI	ACNGT	1 cut(s)	448
Bst6I	CTCTTC	1 cut(s)	407
BstACI	GRCGYC	1 cut(s)	452
BstC8I	GCNNGC	4 cut(s)	15, 219, 243, 525
BstDEI	CTNAG	2 cut(s)	325, 519
BstFNI	CGCG	3 cut(s)	19, 233, 336
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	4 cut(s)	31, 334, 345, 380
BstMBI	GATC	4 cut(s)	28, 331, 342, 377
BstMCI	CGRYCG	4 cut(s)	231, 254, 334, 340
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 359, 524
BstNI	CCWGG	1 cut(s)	396
BstSCI	CCNGG	1 cut(s)	394
BstUI	CGCG	3 cut(s)	19, 233, 336
BstV1I	GCAGC	1 cut(s)	90
BstV2I	GAAGAC	1 cut(s)	249
BstX2I	RGATCY	2 cut(s)	342, 377
BstYI	RGATCY	2 cut(s)	342, 377
BstZI	CGGCCG	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	230, 394
BtsIMutI	CAGTG	2 cut(s)	126, 453
BtuMI	TCGCGA	1 cut(s)	336
Cac8I	GCNNGC	4 cut(s)	15, 219, 243, 525
CfoI	GCGC	1 cut(s)	19
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	2 cut(s)	51, 275
DdeI	CTNAG	2 cut(s)	325, 519
DpnI	GATC	4 cut(s)	30, 333, 344, 379
DpnII	GATC	4 cut(s)	28, 331, 342, 377
DrdI	GACNNNNNNGTC	1 cut(s)	253
DseDI	GACNNNNNNGTC	1 cut(s)	253
EaeI	YGGCCR	2 cut(s)	228, 392
EagI	CGGCCG	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	407
Ecl136II	GAGCTC	1 cut(s)	417
EclXI	CGGCCG	1 cut(s)	228
Eco24I	GRGCYC	1 cut(s)	419
Eco47I	GGWCC	2 cut(s)	51, 275
Eco52I	CGGCCG	1 cut(s)	228
Eco53kI	GAGCTC	1 cut(s)	417
Eco57I	CTGAAG	1 cut(s)	366
Eco88I	CYCGRG	1 cut(s)	465
EcoICRI	GAGCTC	1 cut(s)	417
EcoRII	CCWGG	1 cut(s)	394
EcoT38I	GRGCYC	1 cut(s)	419
FaiI	YATR	1 cut(s)	553
FaqI	GGGAC	1 cut(s)	184
FauI	CCCGC	1 cut(s)	397
Fnu4HI	GCNGC	3 cut(s)	79, 231, 461
FriOI	GRGCYC	1 cut(s)	419
Fsp4HI	GCNGC	3 cut(s)	79, 231, 461
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	3 cut(s)	79, 231, 461
HaeIII	GGCC	2 cut(s)	230, 394
HapII	CCGG	2 cut(s)	242, 340
HhaI	GCGC	1 cut(s)	19
Hin1I	GRCGYC	1 cut(s)	452
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HinfI	GANTC	4 cut(s)	22, 131, 162, 247
HpaII	CCGG	2 cut(s)	242, 340
HphI	GGTGA	2 cut(s)	140, 447
Hpy166II	GTNNAC	2 cut(s)	126, 144
Hpy188I	TCNGA	3 cut(s)	55, 139, 328
Hpy188III	TCNNGA	2 cut(s)	26, 335
Hpy8I	GTNNAC	2 cut(s)	126, 144
Hpy99I	CGWCG	2 cut(s)	317, 535
HpyAV	CCTTC	2 cut(s)	319, 506
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4IV	ACGT	1 cut(s)	452
HpyCH4V	TGCA	1 cut(s)	78
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 359, 524
HpyF3I	CTNAG	2 cut(s)	325, 519
HpySE526I	ACGT	1 cut(s)	452
Hsp92I	GRCGYC	1 cut(s)	452
HspAI	GCGC	1 cut(s)	17
KroI	GCCGGC	1 cut(s)	241
KroNI	GCCGGC	1 cut(s)	243
Kzo9I	GATC	4 cut(s)	28, 331, 342, 377
LguI	GCTCTTC	1 cut(s)	407
LmnI	GCTCC	2 cut(s)	178, 422
Lsp1109I	GCAGC	1 cut(s)	90
LweI	GCATC	2 cut(s)	46, 536
MaeII	ACGT	1 cut(s)	452
MaeIII	GTNAC	2 cut(s)	448, 453
MalI	GATC	4 cut(s)	30, 333, 344, 379
MbiI	CCGCTC	1 cut(s)	173
MboI	GATC	4 cut(s)	28, 331, 342, 377
MboII	GAAGA	7 cut(s)	126, 249, 252, 337, 372, 387, 424
MfeI	CAATTG	1 cut(s)	194
MflI	RGATCY	2 cut(s)	342, 377
MhlI	GDGCHC	1 cut(s)	419
MluCI	AATT	2 cut(s)	194, 304
MlyI	GAGTC	2 cut(s)	31, 241
MmeI	TCCRAC	2 cut(s)	46, 234
MnlI	CCTC	9 cut(s)	55, 64, 178, 212, 217, 289, 292, 310, 474
MreI	CGCCGGCG	1 cut(s)	241
MroNI	GCCGGC	1 cut(s)	241
MroXI	GAANNNNTTC	1 cut(s)	379
MseI	TTAA	1 cut(s)	577
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	2 cut(s)	242, 340
MspR9I	CCNGG	1 cut(s)	396
MunI	CAATTG	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	396
MvnI	CGCG	3 cut(s)	19, 233, 336
MwoI	GCNNNNNNNGC	3 cut(s)	227, 359, 524
NaeI	GCCGGC	1 cut(s)	243
NdeII	GATC	4 cut(s)	28, 331, 342, 377
NgoMIV	GCCGGC	1 cut(s)	241
NlaIV	GGNNCC	2 cut(s)	52, 277
NmeAIII	GCCGAG	3 cut(s)	85, 206, 370
NmuCI	GTSAC	2 cut(s)	448, 453
NruI	TCGCGA	1 cut(s)	336
PciSI	GCTCTTC	1 cut(s)	407
PdiI	GCCGGC	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	379
PfeI	GAWTC	2 cut(s)	131, 162
PflFI	GACNNNGTC	1 cut(s)	250
PkrI	GCNGC	3 cut(s)	80, 232, 462
Ple19I	CGATCG	1 cut(s)	334
PleI	GAGTC	2 cut(s)	30, 241
PpsI	GAGTC	2 cut(s)	30, 241
Psp124BI	GAGCTC	1 cut(s)	419
Psp6I	CCWGG	1 cut(s)	394
PspGI	CCWGG	1 cut(s)	394
PspN4I	GGNNCC	2 cut(s)	52, 277
PspPI	GGNCC	2 cut(s)	51, 275
PsuI	RGATCY	2 cut(s)	342, 377
PsyI	GACNNNGTC	1 cut(s)	250
PvuI	CGATCG	1 cut(s)	334
RruI	TCGCGA	1 cut(s)	336
SacI	GAGCTC	1 cut(s)	419
SapI	GCTCTTC	1 cut(s)	407
SaqAI	TTAA	1 cut(s)	577
SatI	GCNGC	3 cut(s)	79, 231, 461
Sau3AI	GATC	4 cut(s)	28, 331, 342, 377
Sau96I	GGNCC	2 cut(s)	51, 275
SchI	GAGTC	2 cut(s)	31, 241
ScrFI	CCNGG	1 cut(s)	396
SduI	GDGCHC	1 cut(s)	419
SfaNI	GCATC	2 cut(s)	46, 536
SgrAI	CRCCGGYG	1 cut(s)	241
SinI	GGWCC	2 cut(s)	51, 275
Sse9I	AATT	2 cut(s)	194, 304
SsiI	CCGC	8 cut(s)	19, 171, 231, 404, 420, 441, 458, 461
SstI	GAGCTC	1 cut(s)	419
StyD4I	CCNGG	1 cut(s)	394
TaaI	ACNGT	1 cut(s)	448
TaiI	ACGT	1 cut(s)	455
TaqI	TCGA	4 cut(s)	269, 312, 533, 566
TaqII	GACCGA	1 cut(s)	240
TasI	AATT	2 cut(s)	194, 304
TauI	GCSGC	2 cut(s)	233, 463
TfiI	GAWTC	2 cut(s)	131, 162
Tru1I	TTAA	1 cut(s)	577
Tru9I	TTAA	1 cut(s)	577
TscAI	CASTG	2 cut(s)	133, 453
TseFI	GTSAC	2 cut(s)	448, 453
TseI	GCWGC	1 cut(s)	78
Tsp45I	GTSAC	2 cut(s)	448, 453
TspDTI	ATGAA	1 cut(s)	106
TspRI	CASTG	2 cut(s)	133, 453
Tth111I	GACNNNGTC	1 cut(s)	250
VpaK11BI	GGWCC	2 cut(s)	51, 275
XmnI	GAANNNNTTC	1 cut(s)	379
ZraI	GACGTC	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.