Auxilin-related protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_laevigata | RLG00000008433 RLG00000009204 RLG00000022305 RLG00000022729 |
| rosa_multiflora | Rmu_sc0004660.1_g000015 Rmu_sc0027128.1_g000001 |
| rosa_roxburghii | Rroxscaffold_160G00433770 Rroxscaffold_4G00328040 Rroxscaffold_7G00174430 |
| rosa_rugosa | Rorug02G0120600 |
| rosa_samantha | Rh1BG041000 Rh1CG054600 Rh2CG176100 Rh2CG370700 Rh3AG328800 Rh4AG061900 Rh4BG059500 Rh4CG065200 Rh5AG130900 Rh5DG131000 Rh6CG359500 Rh7CG314700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 151 |
| AatII | GACGTC | 1 cut(s) | 155 |
| AciI | CCGC | 3 cut(s) | 158, 161, 164 |
| AcyI | GRCGYC | 1 cut(s) | 152 |
| AfaI | GTAC | 1 cut(s) | 5 |
| AluBI | AGCT | 2 cut(s) | 117, 217 |
| AluI | AGCT | 2 cut(s) | 117, 217 |
| Alw21I | GWGCWC | 1 cut(s) | 119 |
| AoxI | GGCC | 2 cut(s) | 17, 52 |
| ApaI | GGGCCC | 1 cut(s) | 21 |
| AspS9I | GGNCC | 2 cut(s) | 17, 18 |
| AsuHPI | GGTGA | 2 cut(s) | 34, 160 |
| BaeGI | GKGCMC | 1 cut(s) | 21 |
| BanII | GRGCYC | 2 cut(s) | 21, 119 |
| Bbv12I | GWGCWC | 1 cut(s) | 119 |
| BceAI | ACGGC | 1 cut(s) | 112 |
| BfaI | CTAG | 1 cut(s) | 171 |
| BisI | GCNGC | 3 cut(s) | 158, 161, 164 |
| BlsI | GCNGC | 3 cut(s) | 159, 162, 165 |
| BmgT120I | GGNCC | 2 cut(s) | 17, 18 |
| BmiI | GGNNCC | 2 cut(s) | 19, 20 |
| BsaHI | GRCGYC | 1 cut(s) | 152 |
| BsaJI | CCNNGG | 1 cut(s) | 36 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 122, 152 |
| Bse118I | RCCGGY | 1 cut(s) | 70 |
| BseDI | CCNNGG | 1 cut(s) | 36 |
| BseRI | GAGGAG | 1 cut(s) | 22 |
| BseSI | GKGCMC | 1 cut(s) | 21 |
| BshFI | GGCC | 2 cut(s) | 19, 54 |
| BsiHKAI | GWGCWC | 1 cut(s) | 119 |
| BsiSI | CCGG | 1 cut(s) | 71 |
| BsnI | GGCC | 2 cut(s) | 19, 54 |
| Bsp120I | GGGCCC | 1 cut(s) | 17 |
| Bsp1286I | GDGCHC | 2 cut(s) | 21, 119 |
| BspACI | CCGC | 3 cut(s) | 158, 161, 164 |
| BspANI | GGCC | 2 cut(s) | 19, 54 |
| BspLI | GGNNCC | 2 cut(s) | 19, 20 |
| BsrFI | RCCGGY | 1 cut(s) | 70 |
| BssAI | RCCGGY | 1 cut(s) | 70 |
| BssECI | CCNNGG | 1 cut(s) | 36 |
| BssNI | GRCGYC | 1 cut(s) | 152 |
| BssT1I | CCWWGG | 1 cut(s) | 36 |
| Bst4CI | ACNGT | 2 cut(s) | 8, 148 |
| BstACI | GRCGYC | 1 cut(s) | 152 |
| BstC8I | GCNNGC | 1 cut(s) | 168 |
| BstEII | GGTNACC | 1 cut(s) | 40 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 163 |
| BstPI | GGTNACC | 1 cut(s) | 40 |
| BstSLI | GKGCMC | 1 cut(s) | 21 |
| BsuRI | GGCC | 2 cut(s) | 19, 54 |
| Cac8I | GCNNGC | 1 cut(s) | 168 |
| Cfr10I | RCCGGY | 1 cut(s) | 70 |
| Cfr13I | GGNCC | 2 cut(s) | 17, 18 |
| Csp6I | GTAC | 1 cut(s) | 4 |
| CviJI | RGCY | 7 cut(s) | 19, 54, 70, 109, 117, 170, 217 |
| CviKI_1 | RGCY | 7 cut(s) | 19, 54, 70, 109, 117, 170, 217 |
| CviQI | GTAC | 1 cut(s) | 4 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 151 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 151 |
| Ecl136II | GAGCTC | 1 cut(s) | 117 |
| Eco130I | CCWWGG | 1 cut(s) | 36 |
| Eco24I | GRGCYC | 2 cut(s) | 21, 119 |
| Eco53kI | GAGCTC | 1 cut(s) | 117 |
| Eco91I | GGTNACC | 1 cut(s) | 40 |
| EcoICRI | GAGCTC | 1 cut(s) | 117 |
| EcoO109I | RGGNCCY | 1 cut(s) | 18 |
| EcoO65I | GGTNACC | 1 cut(s) | 40 |
| EcoT14I | CCWWGG | 1 cut(s) | 36 |
| EcoT38I | GRGCYC | 2 cut(s) | 21, 119 |
| ErhI | CCWWGG | 1 cut(s) | 36 |
| Fnu4HI | GCNGC | 3 cut(s) | 158, 161, 164 |
| FriOI | GRGCYC | 2 cut(s) | 21, 119 |
| Fsp4HI | GCNGC | 3 cut(s) | 158, 161, 164 |
| FspBI | CTAG | 1 cut(s) | 171 |
| GluI | GCNGC | 3 cut(s) | 158, 161, 164 |
| HaeIII | GGCC | 2 cut(s) | 19, 54 |
| HapII | CCGG | 1 cut(s) | 71 |
| Hin1I | GRCGYC | 1 cut(s) | 152 |
| HindIII | AAGCTT | 1 cut(s) | 215 |
| HinfI | GANTC | 2 cut(s) | 26, 47 |
| HpaII | CCGG | 1 cut(s) | 71 |
| HphI | GGTGA | 2 cut(s) | 34, 160 |
| Hpy166II | GTNNAC | 1 cut(s) | 76 |
| Hpy8I | GTNNAC | 1 cut(s) | 76 |
| Hpy99I | CGWCG | 2 cut(s) | 83, 157 |
| HpyCH4III | ACNGT | 2 cut(s) | 8, 148 |
| HpyCH4IV | ACGT | 1 cut(s) | 152 |
| HpyCH4V | TGCA | 1 cut(s) | 125 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 163 |
| HpySE526I | ACGT | 1 cut(s) | 152 |
| Hsp92I | GRCGYC | 1 cut(s) | 152 |
| LmnI | GCTCC | 1 cut(s) | 122 |
| LpnPI | CCDG | 4 cut(s) | 36, 36, 84, 152 |
| MaeI | CTAG | 1 cut(s) | 171 |
| MaeII | ACGT | 1 cut(s) | 152 |
| MaeIII | GTNAC | 2 cut(s) | 40, 148 |
| MhlI | GDGCHC | 2 cut(s) | 21, 119 |
| MnlI | CCTC | 3 cut(s) | 40, 43, 97 |
| MspI | CCGG | 1 cut(s) | 71 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 163 |
| NlaIV | GGNNCC | 2 cut(s) | 19, 20 |
| NmuCI | GTSAC | 2 cut(s) | 40, 148 |
| PfeI | GAWTC | 2 cut(s) | 26, 47 |
| PkrI | GCNGC | 3 cut(s) | 159, 162, 165 |
| Psp124BI | GAGCTC | 1 cut(s) | 119 |
| PspEI | GGTNACC | 1 cut(s) | 40 |
| PspN4I | GGNNCC | 2 cut(s) | 19, 20 |
| PspOMI | GGGCCC | 1 cut(s) | 17 |
| PspPI | GGNCC | 2 cut(s) | 17, 18 |
| RsaI | GTAC | 1 cut(s) | 5 |
| RsaNI | GTAC | 1 cut(s) | 4 |
| SacI | GAGCTC | 1 cut(s) | 119 |
| SatI | GCNGC | 3 cut(s) | 158, 161, 164 |
| Sau96I | GGNCC | 2 cut(s) | 17, 18 |
| SduI | GDGCHC | 2 cut(s) | 21, 119 |
| SetI | ASST | 4 cut(s) | 42, 119, 155, 219 |
| SgeI | CNNG | 9 cut(s) | 35, 49, 63, 68, 79, 83, 154, 179, 183 |
| SsiI | CCGC | 3 cut(s) | 158, 161, 164 |
| SspMI | CTAG | 1 cut(s) | 171 |
| SstI | GAGCTC | 1 cut(s) | 119 |
| StyI | CCWWGG | 1 cut(s) | 36 |
| TaaI | ACNGT | 2 cut(s) | 8, 148 |
| TaiI | ACGT | 1 cut(s) | 155 |
| TaqI | TCGA | 2 cut(s) | 63, 210 |
| TauI | GCSGC | 3 cut(s) | 160, 163, 166 |
| TfiI | GAWTC | 2 cut(s) | 26, 47 |
| TseFI | GTSAC | 2 cut(s) | 40, 148 |
| Tsp45I | GTSAC | 2 cut(s) | 40, 148 |
| TspGWI | ACGGA | 1 cut(s) | 109 |
| XspI | CTAG | 1 cut(s) | 171 |
| ZraI | GACGTC | 1 cut(s) | 153 |