Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0009742

Physical Location & Seq

Genomic Coordinates Reverse (-)

46851294 .. 46851593

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG328800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGTACGGTGGTGGTGGGCCCACTGATTCCTCCTCCAAGGTCGCCGATTTGCCCAGTGTTGCGAGGCTGAAGAGCTCCGCTGCAAACCATATTTTCTCCTCGACAGTGAAGTCTCCGCCGCCGCGGACAAGTGATAGTAGTGGGTTTGATGACCTTCTTGGTGGGTTTGGCAAGGCTGAGCCGGCGTCGTCGAAAAGCTCTAGCAAGGGTGTGCCGGCTGCTTTCGATGATTTGTCAACTGGGTATTGTTGCTTTCTCTCATTGCTATATTTGTTGGTTGAATTGGATTCCTTTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0016020 GO:0016192 GO:0031982 GO:0043226 GO:0043227 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

99

Amino Acids

10.16

Weight (kDa)

5.07

Isoelectric Point (pI)

57.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009742)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008433 RLG00000009204 RLG00000022305 RLG00000022729
rosa_multiflora	Rmu_sc0004660.1_g000015 Rmu_sc0027128.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433770 Rroxscaffold_4G00328040 Rroxscaffold_7G00174430
rosa_rugosa	Rorug02G0120600
rosa_samantha	Rh1BG041000 Rh1CG054600 Rh2CG176100 Rh2CG370700 Rh3AG328800 Rh4AG061900 Rh4BG059500 Rh4CG065200 Rh5AG130900 Rh5DG131000 Rh6CG359500 Rh7CG314700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	109
AccII	CGCG	1 cut(s)	124
AciI	CCGC	5 cut(s)	78, 116, 119, 122, 124
AcuI	CTGAAG	1 cut(s)	89
AcyI	GRCGYC	1 cut(s)	185
AfaI	GTAC	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	281
AluBI	AGCT	2 cut(s)	75, 198
AluI	AGCT	2 cut(s)	75, 198
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	1 cut(s)	117
AoxI	GGCC	1 cut(s)	17
ApaI	GGGCCC	1 cut(s)	21
ApeKI	GCWGC	2 cut(s)	80, 218
AspS9I	GGNCC	2 cut(s)	17, 18
BaeGI	GKGCMC	1 cut(s)	21
BanII	GRGCYC	2 cut(s)	21, 77
Bbv12I	GWGCWC	1 cut(s)	77
BbvI	GCAGC	2 cut(s)	67, 205
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	1 cut(s)	201
BisI	GCNGC	4 cut(s)	81, 119, 122, 219
BlpI	GCTNAGC	1 cut(s)	177
BlsI	GCNGC	4 cut(s)	82, 120, 123, 220
BmgT120I	GGNCC	2 cut(s)	17, 18
BmiI	GGNNCC	1 cut(s)	19
BmrI	ACTGGG	2 cut(s)	48, 249
BmuI	ACTGGG	2 cut(s)	48, 249
Bpu1102I	GCTNAGC	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	185
BsaJI	CCNNGG	2 cut(s)	36, 122
Bse118I	RCCGGY	2 cut(s)	181, 214
Bse1I	ACTGG	2 cut(s)	54, 244
Bse3DI	GCAATG	1 cut(s)	260
BseDI	CCNNGG	2 cut(s)	36, 122
BseMI	GCAATG	1 cut(s)	260
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	2 cut(s)	54, 244
BseRI	GAGGAG	2 cut(s)	22, 88
BseSI	GKGCMC	1 cut(s)	21
BseXI	GCAGC	2 cut(s)	67, 205
Bsh1236I	CGCG	1 cut(s)	124
BshFI	GGCC	1 cut(s)	19
BsiHKAI	GWGCWC	1 cut(s)	77
BsiSI	CCGG	2 cut(s)	182, 215
BsmAI	GTCTC	1 cut(s)	117
BsnI	GGCC	1 cut(s)	19
Bsp120I	GGGCCC	1 cut(s)	17
Bsp1286I	GDGCHC	2 cut(s)	21, 77
Bsp1720I	GCTNAGC	1 cut(s)	177
BspACI	CCGC	5 cut(s)	78, 116, 119, 122, 124
BspANI	GGCC	1 cut(s)	19
BspCNI	CTCAG	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	124
BspLI	GGNNCC	1 cut(s)	19
BspQI	GCTCTTC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	260
BsrFI	RCCGGY	2 cut(s)	181, 214
BsrI	ACTGG	2 cut(s)	54, 244
BssAI	RCCGGY	2 cut(s)	181, 214
BssECI	CCNNGG	2 cut(s)	36, 122
BssNI	GRCGYC	1 cut(s)	185
BssT1I	CCWWGG	1 cut(s)	36
Bst4CI	ACNGT	2 cut(s)	8, 106
Bst6I	CTCTTC	1 cut(s)	65
BstACI	GRCGYC	1 cut(s)	185
BstC8I	GCNNGC	2 cut(s)	183, 216
BstDEI	CTNAG	1 cut(s)	177
BstDSI	CCRYGG	1 cut(s)	122
BstFNI	CGCG	1 cut(s)	124
BstMAI	GTCTC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstSLI	GKGCMC	1 cut(s)	21
BstUI	CGCG	1 cut(s)	124
BstV1I	GCAGC	2 cut(s)	67, 205
BsuRI	GGCC	1 cut(s)	19
BtgI	CCRYGG	1 cut(s)	122
BtsIMutI	CAGTG	3 cut(s)	21, 61, 111
Cac8I	GCNNGC	2 cut(s)	183, 216
Cfr10I	RCCGGY	2 cut(s)	181, 214
Cfr13I	GGNCC	2 cut(s)	17, 18
Cfr42I	CCGCGG	1 cut(s)	125
CseI	GACGC	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	297
CviJI	RGCY	7 cut(s)	19, 67, 75, 176, 181, 198, 218
CviKI_1	RGCY	7 cut(s)	19, 67, 75, 176, 181, 198, 218
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	177
DrdI	GACNNNNNNGTC	1 cut(s)	109
DseDI	GACNNNNNNGTC	1 cut(s)	109
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
EciI	GGCGGA	1 cut(s)	105
Ecl136II	GAGCTC	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	36
Eco24I	GRGCYC	2 cut(s)	21, 77
Eco53kI	GAGCTC	1 cut(s)	75
Eco57I	CTGAAG	1 cut(s)	89
EcoICRI	GAGCTC	1 cut(s)	75
EcoT14I	CCWWGG	1 cut(s)	36
EcoT38I	GRGCYC	2 cut(s)	21, 77
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	1 cut(s)	300
FaiI	YATR	3 cut(s)	90, 268, 298
FatI	CATG	1 cut(s)	296
Fnu4HI	GCNGC	4 cut(s)	81, 119, 122, 219
FriOI	GRGCYC	2 cut(s)	21, 77
Fsp4HI	GCNGC	4 cut(s)	81, 119, 122, 219
FspBI	CTAG	1 cut(s)	201
GluI	GCNGC	4 cut(s)	81, 119, 122, 219
HaeIII	GGCC	1 cut(s)	19
HapII	CCGG	2 cut(s)	182, 215
HgaI	GACGC	1 cut(s)	174
Hin1I	GRCGYC	1 cut(s)	185
Hin1II	CATG	1 cut(s)	300
HincII	GTYRAC	1 cut(s)	237
HindII	GTYRAC	1 cut(s)	237
HinfI	GANTC	2 cut(s)	26, 287
HpaII	CCGG	2 cut(s)	182, 215
Hpy166II	GTNNAC	1 cut(s)	237
Hpy8I	GTNNAC	1 cut(s)	237
Hpy99I	CGWCG	2 cut(s)	190, 193
HpyAV	CCTTC	1 cut(s)	164
HpyCH4III	ACNGT	2 cut(s)	8, 106
HpyCH4V	TGCA	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	1 cut(s)	177
Hsp92I	GRCGYC	1 cut(s)	185
Hsp92II	CATG	1 cut(s)	300
KroI	GCCGGC	2 cut(s)	181, 214
KroNI	GCCGGC	2 cut(s)	183, 216
KspI	CCGCGG	1 cut(s)	125
LguI	GCTCTTC	1 cut(s)	65
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	4 cut(s)	67, 195, 225, 228
Lsp1109I	GCAGC	2 cut(s)	67, 205
MaeI	CTAG	1 cut(s)	201
MboII	GAAGA	1 cut(s)	82
MhlI	GDGCHC	2 cut(s)	21, 77
MluCI	AATT	1 cut(s)	281
MnlI	CCTC	4 cut(s)	40, 43, 57, 109
MroNI	GCCGGC	2 cut(s)	181, 214
MspA1I	CMGCKG	2 cut(s)	80, 124
MspI	CCGG	2 cut(s)	182, 215
MvnI	CGCG	1 cut(s)	124
MwoI	GCNNNNNNNGC	1 cut(s)	182
NaeI	GCCGGC	2 cut(s)	183, 216
NgoMIV	GCCGGC	2 cut(s)	181, 214
NlaIII	CATG	1 cut(s)	300
NlaIV	GGNNCC	1 cut(s)	19
PciSI	GCTCTTC	1 cut(s)	65
PdiI	GCCGGC	2 cut(s)	183, 216
PfeI	GAWTC	2 cut(s)	26, 287
PkrI	GCNGC	4 cut(s)	82, 120, 123, 220
Psp124BI	GAGCTC	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	19
PspOMI	GGGCCC	1 cut(s)	17
PspPI	GGNCC	2 cut(s)	17, 18
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SacI	GAGCTC	1 cut(s)	77
SacII	CCGCGG	1 cut(s)	125
SapI	GCTCTTC	1 cut(s)	65
SatI	GCNGC	4 cut(s)	81, 119, 122, 219
Sau96I	GGNCC	2 cut(s)	17, 18
SduI	GDGCHC	2 cut(s)	21, 77
SetI	ASST	4 cut(s)	42, 77, 156, 200
Sfr303I	CCGCGG	1 cut(s)	125
SgrBI	CCGCGG	1 cut(s)	125
Sse9I	AATT	1 cut(s)	281
SsiI	CCGC	5 cut(s)	78, 116, 119, 122, 124
SspMI	CTAG	1 cut(s)	201
SstI	GAGCTC	1 cut(s)	77
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	2 cut(s)	8, 106
TaqI	TCGA	3 cut(s)	101, 191, 225
TasI	AATT	1 cut(s)	281
TauI	GCSGC	2 cut(s)	121, 124
TfiI	GAWTC	2 cut(s)	26, 287
TscAI	CASTG	3 cut(s)	28, 61, 111
TseI	GCWGC	2 cut(s)	80, 218
TspRI	CASTG	3 cut(s)	28, 61, 111
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.