Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0009742

Physical Location & Seq

Genomic Coordinates Reverse (-)

12309653 .. 12316252

Gene Structure 6600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG065200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGCCGAGTGGAATCCCCTCCGCTCCCACTACCCCACTTACCCAACCGTCCCTCTCCTCCAACTTGCCTGCCAACTCGGCCGCGAACTCGCCGGCGACTCAGTCGTCTTCTTCCTGCTCGACTGGACCCTCCTCCATATCAACTCGCACCTCCAATTCCTTTGACGGGTCATTCTCCGACGATCGCGACCCTATCTTCGAAGCCCTAAAAGCCCAAACTTTGAGAAGATCTTCGGCAACTCGGCCAGTGACGTCGCCGCTGTCTCGGGCGAGTGATAGTAGTGGGTTTGATGACCTTCTCGTTGGGTTTGGCAAGGCTGAGCTGGCATCGTCGAAAAGCTCTAATAAGGTTCGGGACAGAGGAGAGAGCGGTGTAATGAAACTTCCCTGTATTCTTCGGGTCGCTCATTTGCTTGCTTCTCAATCTCAGGCATTGATGGTCTACATAACTGTGGGATCAGCTGCATATCCAATCTGTTACACCATCTTATACACTAGCTCAACAGATTTCAAAGAGCGCATCCCCTGTGGAGCATTTTCGTCAGGCATTGTAGCAGGGGCTGTGAAGAAAGAAGGTAGCAAAGGGAATGAGACAGGTTTGAGGCACAAAGCTTTGCAATCTCAATTGGAACCCTATTCTGATCCAAAACTTCAGGCATCTGAGCTTTTCGGCGAGCCCCATCTGAAGGAAACTCAGAAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0016020 GO:0016192 GO:0031982 GO:0043226 GO:0043227 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

234

Amino Acids

24.63

Weight (kDa)

8.66

Isoelectric Point (pI)

52.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009742)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008433 RLG00000009204 RLG00000022305 RLG00000022729
rosa_multiflora	Rmu_sc0004660.1_g000015 Rmu_sc0027128.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433770 Rroxscaffold_4G00328040 Rroxscaffold_7G00174430
rosa_rugosa	Rorug02G0120600
rosa_samantha	Rh1BG041000 Rh1CG054600 Rh2CG176100 Rh2CG370700 Rh3AG328800 Rh4AG061900 Rh4BG059500 Rh4CG065200 Rh5AG130900 Rh5DG131000 Rh6CG359500 Rh7CG314700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	103
AatII	GACGTC	1 cut(s)	254
AccBSI	CCGCTC	2 cut(s)	23, 369
AccI	GTMKAC	1 cut(s)	441
AccII	CGCG	2 cut(s)	83, 186
AciI	CCGC	4 cut(s)	21, 81, 257, 369
AclWI	GGATC	2 cut(s)	463, 635
AcoI	YGGCCR	2 cut(s)	78, 242
AcuI	CTGAAG	2 cut(s)	635, 704
AcyI	GRCGYC	1 cut(s)	251
AfiI	CCNNNNNNNGG	2 cut(s)	165, 685
AgsI	TTSAA	1 cut(s)	511
AluBI	AGCT	6 cut(s)	322, 339, 461, 498, 611, 664
AluI	AGCT	6 cut(s)	322, 339, 461, 498, 611, 664
Alw26I	GTCTC	2 cut(s)	267, 584
AlwI	GGATC	2 cut(s)	463, 635
AlwNI	CAGNNNCTG	1 cut(s)	560
Ama87I	CYCGRG	1 cut(s)	264
AoxI	GGCC	2 cut(s)	78, 242
ApeKI	GCWGC	1 cut(s)	461
ArsI	GACNNNNNNTTYG	2 cut(s)	179, 211
Asp700I	GAANNNNTTC	1 cut(s)	229
AspLEI	GCGC	1 cut(s)	519
AspS9I	GGNCC	1 cut(s)	125
AsuII	TTCGAA	1 cut(s)	198
AvaI	CYCGRG	1 cut(s)	264
AvaII	GGWCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	678
BarI	GAAGNNNNNNTAC	2 cut(s)	366, 398
BbsI	GAAGAC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	448
BccI	CCATC	3 cut(s)	430, 491, 687
BcoDI	GTCTC	2 cut(s)	267, 584
BfaI	CTAG	2 cut(s)	495, 703
BglI	GCCNNNNNGGC	1 cut(s)	77
BglII	AGATCT	1 cut(s)	227
BisI	GCNGC	3 cut(s)	81, 257, 462
BlpI	GCTNAGC	1 cut(s)	318
BlsI	GCNGC	3 cut(s)	82, 258, 463
Bme18I	GGWCC	1 cut(s)	125
BmeT110I	CYCGRG	1 cut(s)	264
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	2 cut(s)	127, 630
BmsI	GCATC	3 cut(s)	335, 528, 665
BpiI	GAAGAC	1 cut(s)	99
Bpu1102I	GCTNAGC	1 cut(s)	318
Bpu14I	TTCGAA	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 685
Bse118I	RCCGGY	1 cut(s)	91
Bse1I	ACTGG	2 cut(s)	127, 245
BseGI	GGATG	1 cut(s)	519
BseLI	CCNNNNNNNGG	2 cut(s)	165, 685
BseMII	CTCAG	4 cut(s)	113, 309, 440, 651
BseNI	ACTGG	2 cut(s)	127, 245
BseRI	GAGGAG	3 cut(s)	46, 121, 375
BseX3I	CGGCCG	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	448
Bsh1236I	CGCG	2 cut(s)	83, 186
Bsh1285I	CGRYCG	2 cut(s)	81, 184
BshFI	GGCC	2 cut(s)	80, 244
BsiEI	CGRYCG	2 cut(s)	81, 184
BsiHKCI	CYCGRG	1 cut(s)	264
BsiSI	CCGG	1 cut(s)	92
BslFI	GGGAC	2 cut(s)	34, 368
BslI	CCNNNNNNNGG	2 cut(s)	165, 685
BsmAI	GTCTC	2 cut(s)	267, 584
BsmFI	GGGAC	2 cut(s)	34, 368
BsnI	GGCC	2 cut(s)	80, 244
BsoBI	CYCGRG	1 cut(s)	264
Bsp119I	TTCGAA	1 cut(s)	198
Bsp1286I	GDGCHC	1 cut(s)	678
Bsp143I	GATC	4 cut(s)	181, 227, 455, 640
Bsp1720I	GCTNAGC	1 cut(s)	318
Bsp68I	TCGCGA	1 cut(s)	186
BspACI	CCGC	4 cut(s)	21, 81, 257, 369
BspANI	GGCC	2 cut(s)	80, 244
BspCNI	CTCAG	4 cut(s)	112, 310, 439, 652
BspFNI	CGCG	2 cut(s)	83, 186
BspLI	GGNNCC	2 cut(s)	127, 630
BspPI	GGATC	2 cut(s)	463, 635
BspT104I	TTCGAA	1 cut(s)	198
BsrBI	CCGCTC	2 cut(s)	23, 369
BsrFI	RCCGGY	1 cut(s)	91
BsrI	ACTGG	2 cut(s)	127, 245
BssAI	RCCGGY	1 cut(s)	91
BssMI	GATC	4 cut(s)	181, 227, 455, 640
BssNI	GRCGYC	1 cut(s)	251
Bst4CI	ACNGT	2 cut(s)	48, 451
BstACI	GRCGYC	1 cut(s)	251
BstBI	TTCGAA	1 cut(s)	198
BstC8I	GCNNGC	5 cut(s)	69, 93, 324, 414, 674
BstDEI	CTNAG	5 cut(s)	99, 318, 426, 660, 693
BstF5I	GGATG	1 cut(s)	519
BstFNI	CGCG	2 cut(s)	83, 186
BstHHI	GCGC	1 cut(s)	519
BstKTI	GATC	4 cut(s)	184, 230, 458, 643
BstMAI	GTCTC	2 cut(s)	267, 584
BstMBI	GATC	4 cut(s)	181, 227, 455, 640
BstMCI	CGRYCG	2 cut(s)	81, 184
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 209, 323
BstUI	CGCG	2 cut(s)	83, 186
BstV1I	GCAGC	1 cut(s)	448
BstV2I	GAAGAC	1 cut(s)	99
BstX2I	RGATCY	1 cut(s)	227
BstYI	RGATCY	1 cut(s)	227
BstZI	CGGCCG	1 cut(s)	78
BsuRI	GGCC	2 cut(s)	80, 244
BtsCI	GGATG	1 cut(s)	519
BtsIMutI	CAGTG	1 cut(s)	252
BtuMI	TCGCGA	1 cut(s)	186
Cac8I	GCNNGC	5 cut(s)	69, 93, 324, 414, 674
CaiI	CAGNNNCTG	1 cut(s)	560
CfoI	GCGC	1 cut(s)	519
Cfr10I	RCCGGY	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	125
DdeI	CTNAG	5 cut(s)	99, 318, 426, 660, 693
DpnI	GATC	4 cut(s)	183, 229, 457, 642
DpnII	GATC	4 cut(s)	181, 227, 455, 640
DrdI	GACNNNNNNGTC	1 cut(s)	103
DseDI	GACNNNNNNGTC	1 cut(s)	103
EaeI	YGGCCR	2 cut(s)	78, 242
EagI	CGGCCG	1 cut(s)	78
EclXI	CGGCCG	1 cut(s)	78
Eco24I	GRGCYC	1 cut(s)	678
Eco47I	GGWCC	1 cut(s)	125
Eco52I	CGGCCG	1 cut(s)	78
Eco57I	CTGAAG	2 cut(s)	635, 704
Eco88I	CYCGRG	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	678
FaiI	YATR	4 cut(s)	137, 446, 466, 490
FaqI	GGGAC	2 cut(s)	34, 368
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	3 cut(s)	81, 257, 462
FokI	GGATG	1 cut(s)	506
FriOI	GRGCYC	1 cut(s)	678
Fsp4HI	GCNGC	3 cut(s)	81, 257, 462
FspBI	CTAG	2 cut(s)	495, 703
GlaI	GCGC	1 cut(s)	518
GluI	GCNGC	3 cut(s)	81, 257, 462
HaeIII	GGCC	2 cut(s)	80, 244
HapII	CCGG	1 cut(s)	92
HhaI	GCGC	1 cut(s)	519
Hin1I	GRCGYC	1 cut(s)	251
Hin6I	GCGC	1 cut(s)	517
HinP1I	GCGC	1 cut(s)	517
HindIII	AAGCTT	1 cut(s)	609
HinfI	GANTC	2 cut(s)	12, 97
HpaII	CCGG	1 cut(s)	92
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188I	TCNGA	5 cut(s)	178, 640, 661, 684, 696
Hpy188III	TCNNGA	2 cut(s)	185, 353
Hpy8I	GTNNAC	1 cut(s)	442
Hpy99I	CGWCG	3 cut(s)	182, 256, 334
HpyAV	CCTTC	4 cut(s)	305, 566, 679, 691
HpyCH4III	ACNGT	2 cut(s)	48, 451
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	2 cut(s)	464, 616
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 209, 323
HpyF3I	CTNAG	5 cut(s)	99, 318, 426, 660, 693
HpySE526I	ACGT	1 cut(s)	251
Hsp92I	GRCGYC	1 cut(s)	251
HspAI	GCGC	1 cut(s)	517
KroI	GCCGGC	1 cut(s)	91
KroNI	GCCGGC	1 cut(s)	93
Kzo9I	GATC	4 cut(s)	181, 227, 455, 640
LmnI	GCTCC	2 cut(s)	28, 530
Lsp1109I	GCAGC	1 cut(s)	448
LweI	GCATC	3 cut(s)	335, 528, 665
MaeI	CTAG	2 cut(s)	495, 703
MaeII	ACGT	1 cut(s)	251
MaeIII	GTNAC	2 cut(s)	247, 476
MalI	GATC	4 cut(s)	183, 229, 457, 642
MbiI	CCGCTC	2 cut(s)	23, 369
MboI	GATC	4 cut(s)	181, 227, 455, 640
MboII	GAAGA	7 cut(s)	99, 102, 187, 222, 237, 386, 577
MfeI	CAATTG	1 cut(s)	623
MflI	RGATCY	1 cut(s)	227
MhlI	GDGCHC	1 cut(s)	678
MluCI	AATT	2 cut(s)	154, 623
MlyI	GAGTC	1 cut(s)	91
MmeI	TCCRAC	2 cut(s)	84, 201
MnlI	CCTC	8 cut(s)	28, 62, 67, 139, 142, 160, 353, 594
MreI	CGCCGGCG	1 cut(s)	91
MroNI	GCCGGC	1 cut(s)	91
MroXI	GAANNNNTTC	1 cut(s)	229
MslI	CAYNNNNRTG	1 cut(s)	449
MspA1I	CMGCKG	2 cut(s)	259, 461
MspI	CCGG	1 cut(s)	92
MunI	CAATTG	1 cut(s)	623
MvnI	CGCG	2 cut(s)	83, 186
MwoI	GCNNNNNNNGC	3 cut(s)	77, 209, 323
NaeI	GCCGGC	1 cut(s)	93
NdeII	GATC	4 cut(s)	181, 227, 455, 640
NgoMIV	GCCGGC	1 cut(s)	91
NlaIV	GGNNCC	2 cut(s)	127, 630
NmeAIII	GCCGAG	3 cut(s)	30, 56, 220
NmuCI	GTSAC	1 cut(s)	247
NruI	TCGCGA	1 cut(s)	186
NspV	TTCGAA	1 cut(s)	198
PdiI	GCCGGC	1 cut(s)	93
PdmI	GAANNNNTTC	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	12
PflFI	GACNNNGTC	1 cut(s)	100
PkrI	GCNGC	3 cut(s)	82, 258, 463
Ple19I	CGATCG	1 cut(s)	184
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PspN4I	GGNNCC	2 cut(s)	127, 630
PspPI	GGNCC	1 cut(s)	125
PstNI	CAGNNNCTG	1 cut(s)	560
PsuI	RGATCY	1 cut(s)	227
PsyI	GACNNNGTC	1 cut(s)	100
PvuI	CGATCG	1 cut(s)	184
PvuII	CAGCTG	1 cut(s)	461
RruI	TCGCGA	1 cut(s)	186
RseI	CAYNNNNRTG	1 cut(s)	449
SatI	GCNGC	3 cut(s)	81, 257, 462
Sau3AI	GATC	4 cut(s)	181, 227, 455, 640
Sau96I	GGNCC	1 cut(s)	125
SchI	GAGTC	1 cut(s)	91
SduI	GDGCHC	1 cut(s)	678
SfaNI	GCATC	3 cut(s)	335, 528, 665
SfuI	TTCGAA	1 cut(s)	198
SgrAI	CRCCGGYG	1 cut(s)	91
SinI	GGWCC	1 cut(s)	125
SmiMI	CAYNNNNRTG	1 cut(s)	449
Sse9I	AATT	2 cut(s)	154, 623
SsiI	CCGC	4 cut(s)	21, 81, 257, 369
SspMI	CTAG	2 cut(s)	495, 703
TaaI	ACNGT	2 cut(s)	48, 451
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	3 cut(s)	119, 198, 332
TasI	AATT	2 cut(s)	154, 623
TauI	GCSGC	2 cut(s)	83, 259
TfiI	GAWTC	1 cut(s)	12
TscAI	CASTG	1 cut(s)	252
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	1 cut(s)	461
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	1 cut(s)	392
TspRI	CASTG	1 cut(s)	252
Tth111I	GACNNNGTC	1 cut(s)	100
VpaK11BI	GGWCC	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	441
XmnI	GAANNNNTTC	1 cut(s)	229
XspI	CTAG	2 cut(s)	495, 703
ZraI	GACGTC	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.