Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004660.1

Orthogroup ID

OG0009742

Physical Location & Seq

Genomic Coordinates Reverse (-)

70311 .. 70712

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004660.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atgtctccttatctcgggtctcataagcttcgattacggcttcaagccctccgacaaatcggtctcaatgtcttctattcttcttcatcttctttttcaaagcccttagctttcgatctcagatccaccggaccctcctccagatcaactcgcacctctaattccttcaatgggtccttctccgacgatcatgaccagatctttggagccctgaaagcccaagactttgagaacatcttcggtggttcagccaggttctccaccaatttcgaagttttcaacttggattccatgtacggtggtggtgggccccctgattcagcctccaaggtcaccgattctggcccgattttcgacaagccgatttacgatgataacatttttgacggcattgggggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0016020 GO:0016192 GO:0031982 GO:0043226 GO:0043227 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

14.41

Weight (kDa)

5.53

Isoelectric Point (pI)

60.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009742)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008433 RLG00000009204 RLG00000022305 RLG00000022729
rosa_multiflora	Rmu_sc0004660.1_g000015 Rmu_sc0027128.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433770 Rroxscaffold_4G00328040 Rroxscaffold_7G00174430
rosa_rugosa	Rorug02G0120600
rosa_samantha	Rh1BG041000 Rh1CG054600 Rh2CG176100 Rh2CG370700 Rh3AG328800 Rh4AG061900 Rh4BG059500 Rh4CG065200 Rh5AG130900 Rh5DG131000 Rh6CG359500 Rh7CG314700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	60
AclWI	GGATC	1 cut(s)	117
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	2 cut(s)	14, 171
AgsI	TTSAA	4 cut(s)	44, 99, 169, 280
AjnI	CCWGG	1 cut(s)	251
AluBI	AGCT	2 cut(s)	28, 110
AluI	AGCT	2 cut(s)	28, 110
Alw26I	GTCTC	3 cut(s)	9, 24, 68
AlwI	GGATC	1 cut(s)	117
Ama87I	CYCGRG	1 cut(s)	14
AoxI	GGCC	2 cut(s)	308, 343
ApaI	GGGCCC	1 cut(s)	312
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
Asp700I	GAANNNNTTC	1 cut(s)	236
AspS9I	GGNCC	5 cut(s)	131, 174, 308, 309, 344
AsuHPI	GGTGA	1 cut(s)	325
AsuII	TTCGAA	1 cut(s)	270
AvaI	CYCGRG	1 cut(s)	14
AvaII	GGWCC	2 cut(s)	131, 174
BaeGI	GKGCMC	1 cut(s)	312
BanII	GRGCYC	2 cut(s)	211, 312
BbsI	GAAGAC	1 cut(s)	64
BceAI	ACGGC	1 cut(s)	53
BciT130I	CCWGG	1 cut(s)	253
BcoDI	GTCTC	3 cut(s)	9, 24, 68
BglII	AGATCT	1 cut(s)	198
Bme1390I	CCNGG	1 cut(s)	253
Bme18I	GGWCC	2 cut(s)	131, 174
BmeT110I	CYCGRG	1 cut(s)	14
BmgT120I	GGNCC	5 cut(s)	131, 174, 308, 309, 344
BmiI	GGNNCC	5 cut(s)	133, 175, 208, 310, 311
BmrFI	CCNGG	1 cut(s)	253
BpiI	GAAGAC	1 cut(s)	64
BpmI	CTGGAG	1 cut(s)	124
Bpu10I	CCTNAGC	1 cut(s)	106
Bpu14I	TTCGAA	1 cut(s)	270
BsaI	GGTCTC	2 cut(s)	24, 68
BsaJI	CCNNGG	1 cut(s)	327
BsaWI	WCCGGW	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 171
BseBI	CCWGG	1 cut(s)	253
BseDI	CCNNGG	1 cut(s)	327
BseLI	CCNNNNNNNGG	2 cut(s)	14, 171
BseMII	CTCAG	1 cut(s)	133
BseRI	GAGGAG	1 cut(s)	127
BseSI	GKGCMC	1 cut(s)	312
BshFI	GGCC	2 cut(s)	310, 345
BsiHKCI	CYCGRG	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	129
BslI	CCNNNNNNNGG	2 cut(s)	14, 171
BsmAI	GTCTC	3 cut(s)	9, 24, 68
BsnI	GGCC	2 cut(s)	310, 345
Bso31I	GGTCTC	2 cut(s)	24, 68
BsoBI	CYCGRG	1 cut(s)	14
Bsp119I	TTCGAA	1 cut(s)	270
Bsp120I	GGGCCC	1 cut(s)	308
Bsp1286I	GDGCHC	2 cut(s)	211, 312
Bsp143I	GATC	5 cut(s)	115, 122, 143, 187, 198
BspANI	GGCC	2 cut(s)	310, 345
BspCNI	CTCAG	1 cut(s)	132
BspHI	TCATGA	1 cut(s)	190
BspLI	GGNNCC	5 cut(s)	133, 175, 208, 310, 311
BspPI	GGATC	1 cut(s)	117
BspT104I	TTCGAA	1 cut(s)	270
BspTNI	GGTCTC	2 cut(s)	24, 68
BssECI	CCNNGG	1 cut(s)	327
BssMI	GATC	5 cut(s)	115, 122, 143, 187, 198
BssT1I	CCWWGG	1 cut(s)	327
Bst2UI	CCWGG	1 cut(s)	253
Bst4CI	ACNGT	1 cut(s)	299
BstBI	TTCGAA	1 cut(s)	270
BstDEI	CTNAG	2 cut(s)	106, 119
BstEII	GGTNACC	1 cut(s)	331
BstKTI	GATC	5 cut(s)	118, 125, 146, 190, 201
BstMAI	GTCTC	3 cut(s)	9, 24, 68
BstMBI	GATC	5 cut(s)	115, 122, 143, 187, 198
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 396
BstNI	CCWGG	1 cut(s)	253
BstPI	GGTNACC	1 cut(s)	331
BstSCI	CCNGG	1 cut(s)	251
BstSLI	GKGCMC	1 cut(s)	312
BstV2I	GAAGAC	1 cut(s)	64
BstX2I	RGATCY	2 cut(s)	122, 198
BstXI	CCANNNNNNTGG	1 cut(s)	203
BstYI	RGATCY	2 cut(s)	122, 198
BsuRI	GGCC	2 cut(s)	310, 345
CciI	TCATGA	1 cut(s)	190
Cfr13I	GGNCC	5 cut(s)	131, 174, 308, 309, 344
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	2 cut(s)	191, 292
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	2 cut(s)	106, 119
DpnI	GATC	5 cut(s)	117, 124, 145, 189, 200
DpnII	GATC	5 cut(s)	115, 122, 143, 187, 198
DrdI	GACNNNNNNGTC	1 cut(s)	60
DseDI	GACNNNNNNGTC	1 cut(s)	60
Eco130I	CCWWGG	1 cut(s)	327
Eco24I	GRGCYC	2 cut(s)	211, 312
Eco31I	GGTCTC	2 cut(s)	24, 68
Eco47I	GGWCC	2 cut(s)	131, 174
Eco88I	CYCGRG	1 cut(s)	14
Eco91I	GGTNACC	1 cut(s)	331
EcoO109I	RGGNCCY	2 cut(s)	174, 309
EcoO65I	GGTNACC	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	251
EcoT14I	CCWWGG	1 cut(s)	327
EcoT38I	GRGCYC	2 cut(s)	211, 312
ErhI	CCWWGG	1 cut(s)	327
FaeI	CATG	2 cut(s)	194, 295
FaiI	YATR	3 cut(s)	24, 192, 293
FatI	CATG	2 cut(s)	190, 291
FriOI	GRGCYC	2 cut(s)	211, 312
GsuI	CTGGAG	1 cut(s)	124
HaeIII	GGCC	2 cut(s)	310, 345
HapII	CCGG	1 cut(s)	129
Hin1II	CATG	2 cut(s)	194, 295
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	3 cut(s)	287, 317, 338
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	1 cut(s)	325
Hpy188I	TCNGA	3 cut(s)	53, 122, 184
Hpy188III	TCNNGA	2 cut(s)	141, 191
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	2 cut(s)	175, 187
HpyCH4III	ACNGT	1 cut(s)	299
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 396
HpyF3I	CTNAG	2 cut(s)	106, 119
Hsp92II	CATG	2 cut(s)	194, 295
Kzo9I	GATC	5 cut(s)	115, 122, 143, 187, 198
LmnI	GCTCC	1 cut(s)	206
LpnPI	CCDG	8 cut(s)	142, 154, 209, 224, 238, 265, 327, 327
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	5 cut(s)	117, 124, 145, 189, 200
MboI	GATC	5 cut(s)	115, 122, 143, 187, 198
MboII	GAAGA	5 cut(s)	64, 72, 75, 81, 229
MflI	RGATCY	2 cut(s)	122, 198
MhlI	GDGCHC	2 cut(s)	211, 312
MluCI	AATT	2 cut(s)	160, 265
MmeI	TCCRAC	2 cut(s)	76, 207
MnlI	CCTC	5 cut(s)	59, 145, 148, 166, 334
MroXI	GAANNNNTTC	1 cut(s)	236
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	1 cut(s)	253
MvaI	CCWGG	1 cut(s)	253
MwoI	GCNNNNNNNGC	2 cut(s)	215, 396
NdeII	GATC	5 cut(s)	115, 122, 143, 187, 198
NlaIII	CATG	2 cut(s)	194, 295
NlaIV	GGNNCC	5 cut(s)	133, 175, 208, 310, 311
NmuCI	GTSAC	1 cut(s)	331
NspV	TTCGAA	1 cut(s)	270
PagI	TCATGA	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	3 cut(s)	287, 317, 338
PpuMI	RGGWCCY	1 cut(s)	174
Psp5II	RGGWCCY	1 cut(s)	174
Psp6I	CCWGG	1 cut(s)	251
PspEI	GGTNACC	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	251
PspN4I	GGNNCC	5 cut(s)	133, 175, 208, 310, 311
PspOMI	GGGCCC	1 cut(s)	308
PspPI	GGNCC	5 cut(s)	131, 174, 308, 309, 344
PspPPI	RGGWCCY	1 cut(s)	174
PsuI	RGATCY	2 cut(s)	122, 198
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
Sau3AI	GATC	5 cut(s)	115, 122, 143, 187, 198
Sau96I	GGNCC	5 cut(s)	131, 174, 308, 309, 344
ScrFI	CCNGG	1 cut(s)	253
SduI	GDGCHC	2 cut(s)	211, 312
SetI	ASST	5 cut(s)	30, 112, 158, 257, 333
SfuI	TTCGAA	1 cut(s)	270
SinI	GGWCC	2 cut(s)	131, 174
Sse9I	AATT	2 cut(s)	160, 265
StyD4I	CCNGG	1 cut(s)	251
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	1 cut(s)	299
TaqI	TCGA	4 cut(s)	31, 114, 270, 354
TaqII	GACCGA	1 cut(s)	50
TasI	AATT	2 cut(s)	160, 265
TfiI	GAWTC	3 cut(s)	287, 317, 338
TseFI	GTSAC	1 cut(s)	331
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	1 cut(s)	75
VpaK11BI	GGWCC	2 cut(s)	131, 174
XmnI	GAANNNNTTC	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.