Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009742

Physical Location & Seq

Genomic Coordinates Forward (+)

60907205 .. 60907764

Gene Structure 560 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00328040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGTTCTCACCCACCTCCCAACGACTCTTCCCGCCGCCGTACTGGACCGACGATGAATCGGCCCCAATGTCTCCTAATCTCGGAGCCCCGAAAGCCCAAGACTTTGAGAACATCTTCGGCGGTTCAGCCAAGTTCTCCACCAATTTTAAAGATTTCAACTTGGATTCCATGTACGGTGGTGGTGGGCCCCCTGATTCCTCCTCCAAGGTCACCGATTCTGGCCTTGTTTTCGACAAGCCGGTTTACGACGATGACATTTTAGACGGCGTTGAGGGGCTAAAGAGCTCCGTTGCAAACGACATTTTCTCCTTGACGGTGACGTCGCCGCCGCCGCAGGCTAGTGATAGTAGTGGGATTGATGACTTTCTCTGTGTCATCGAAAAGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0016020 GO:0016192 GO:0031982 GO:0043226 GO:0043227 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

13.8

Weight (kDa)

4.05

Isoelectric Point (pI)

55.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009742)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008433 RLG00000009204 RLG00000022305 RLG00000022729
rosa_multiflora	Rmu_sc0004660.1_g000015 Rmu_sc0027128.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433770 Rroxscaffold_4G00328040 Rroxscaffold_7G00174430
rosa_rugosa	Rorug02G0120600
rosa_samantha	Rh1BG041000 Rh1CG054600 Rh2CG176100 Rh2CG370700 Rh3AG328800 Rh4AG061900 Rh4BG059500 Rh4CG065200 Rh5AG130900 Rh5DG131000 Rh6CG359500 Rh7CG314700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	319
AatII	GACGTC	1 cut(s)	323
AciI	CCGC	6 cut(s)	32, 35, 120, 326, 329, 332
AcyI	GRCGYC	1 cut(s)	320
AfaI	GTAC	2 cut(s)	41, 173
AfiI	CCNNNNNNNGG	1 cut(s)	80
AgsI	TTSAA	1 cut(s)	157
AluBI	AGCT	2 cut(s)	285, 385
AluI	AGCT	2 cut(s)	285, 385
Alw21I	GWGCWC	1 cut(s)	287
Alw26I	GTCTC	1 cut(s)	75
AoxI	GGCC	3 cut(s)	60, 185, 220
ApaI	GGGCCC	1 cut(s)	189
Asp700I	GAANNNNTTC	1 cut(s)	113
AspS9I	GGNCC	4 cut(s)	45, 61, 185, 186
AsuHPI	GGTGA	2 cut(s)	202, 328
AvaII	GGWCC	1 cut(s)	45
BaeGI	GKGCMC	1 cut(s)	189
BanII	GRGCYC	3 cut(s)	88, 189, 287
Bbv12I	GWGCWC	1 cut(s)	287
BceAI	ACGGC	2 cut(s)	22, 280
BcoDI	GTCTC	1 cut(s)	75
BfaI	CTAG	1 cut(s)	339
BisI	GCNGC	4 cut(s)	35, 326, 329, 332
BlsI	GCNGC	4 cut(s)	36, 327, 330, 333
Bme18I	GGWCC	1 cut(s)	45
BmgT120I	GGNCC	4 cut(s)	45, 61, 185, 186
BmiI	GGNNCC	4 cut(s)	63, 85, 187, 188
BsaHI	GRCGYC	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	204
BsaXI	ACNNNNNCTCC	2 cut(s)	290, 320
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
Bse118I	RCCGGY	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseNI	ACTGG	1 cut(s)	47
BseRI	GAGGAG	1 cut(s)	190
BseSI	GKGCMC	1 cut(s)	189
BshFI	GGCC	3 cut(s)	62, 187, 222
BsiHKAI	GWGCWC	1 cut(s)	287
BsiSI	CCGG	1 cut(s)	239
BslI	CCNNNNNNNGG	1 cut(s)	80
BsmAI	GTCTC	1 cut(s)	75
BsnI	GGCC	3 cut(s)	62, 187, 222
Bsp120I	GGGCCC	1 cut(s)	185
Bsp1286I	GDGCHC	3 cut(s)	88, 189, 287
BspACI	CCGC	6 cut(s)	32, 35, 120, 326, 329, 332
BspANI	GGCC	3 cut(s)	62, 187, 222
BspLI	GGNNCC	4 cut(s)	63, 85, 187, 188
BsrFI	RCCGGY	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	47
BssAI	RCCGGY	1 cut(s)	238
BssECI	CCNNGG	1 cut(s)	204
BssNI	GRCGYC	1 cut(s)	320
BssT1I	CCWWGG	1 cut(s)	204
Bst4CI	ACNGT	2 cut(s)	176, 316
Bst6I	CTCTTC	1 cut(s)	32
BstACI	GRCGYC	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	336
BstEII	GGTNACC	1 cut(s)	208
BstMAI	GTCTC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 331
BstPI	GGTNACC	1 cut(s)	208
BstSLI	GKGCMC	1 cut(s)	189
BsuRI	GGCC	3 cut(s)	62, 187, 222
Cac8I	GCNNGC	1 cut(s)	336
Cfr10I	RCCGGY	1 cut(s)	238
Cfr13I	GGNCC	4 cut(s)	45, 61, 185, 186
Csp6I	GTAC	2 cut(s)	40, 172
CviAII	CATG	1 cut(s)	169
CviQI	GTAC	2 cut(s)	40, 172
DraI	TTTAAA	1 cut(s)	148
DrdI	GACNNNNNNGTC	1 cut(s)	319
DseDI	GACNNNNNNGTC	1 cut(s)	319
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Ecl136II	GAGCTC	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	204
Eco24I	GRGCYC	3 cut(s)	88, 189, 287
Eco47I	GGWCC	1 cut(s)	45
Eco53kI	GAGCTC	1 cut(s)	285
Eco91I	GGTNACC	1 cut(s)	208
EcoICRI	GAGCTC	1 cut(s)	285
EcoO109I	RGGNCCY	1 cut(s)	186
EcoO65I	GGTNACC	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	204
EcoT38I	GRGCYC	3 cut(s)	88, 189, 287
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	1 cut(s)	172
FaiI	YATR	1 cut(s)	170
FatI	CATG	1 cut(s)	168
FauI	CCCGC	1 cut(s)	39
Fnu4HI	GCNGC	4 cut(s)	35, 326, 329, 332
FriOI	GRGCYC	3 cut(s)	88, 189, 287
Fsp4HI	GCNGC	4 cut(s)	35, 326, 329, 332
FspBI	CTAG	1 cut(s)	339
GluI	GCNGC	4 cut(s)	35, 326, 329, 332
HaeIII	GGCC	3 cut(s)	62, 187, 222
HapII	CCGG	1 cut(s)	239
Hin1I	GRCGYC	1 cut(s)	320
Hin1II	CATG	1 cut(s)	172
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	5 cut(s)	24, 56, 164, 194, 215
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	2 cut(s)	202, 328
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	1 cut(s)	83
Hpy8I	GTNNAC	1 cut(s)	244
Hpy99I	CGWCG	3 cut(s)	53, 251, 325
HpyCH4III	ACNGT	2 cut(s)	176, 316
HpyCH4IV	ACGT	1 cut(s)	320
HpyCH4V	TGCA	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 331
HpySE526I	ACGT	1 cut(s)	320
Hsp92I	GRCGYC	1 cut(s)	320
Hsp92II	CATG	1 cut(s)	172
LmnI	GCTCC	2 cut(s)	83, 290
LpnPI	CCDG	5 cut(s)	28, 204, 204, 252, 320
MaeI	CTAG	1 cut(s)	339
MaeII	ACGT	1 cut(s)	320
MaeIII	GTNAC	2 cut(s)	208, 316
MboII	GAAGA	2 cut(s)	19, 106
MhlI	GDGCHC	3 cut(s)	88, 189, 287
MluCI	AATT	1 cut(s)	142
MlyI	GAGTC	1 cut(s)	18
MnlI	CCTC	4 cut(s)	25, 208, 211, 265
MroXI	GAANNNNTTC	1 cut(s)	113
MseI	TTAA	1 cut(s)	147
MspI	CCGG	1 cut(s)	239
MwoI	GCNNNNNNNGC	2 cut(s)	92, 331
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	4 cut(s)	63, 85, 187, 188
NmuCI	GTSAC	2 cut(s)	208, 316
PdmI	GAANNNNTTC	1 cut(s)	113
PfeI	GAWTC	4 cut(s)	56, 164, 194, 215
PkrI	GCNGC	4 cut(s)	36, 327, 330, 333
PleI	GAGTC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	18
Psp124BI	GAGCTC	1 cut(s)	287
PspEI	GGTNACC	1 cut(s)	208
PspN4I	GGNNCC	4 cut(s)	63, 85, 187, 188
PspOMI	GGGCCC	1 cut(s)	185
PspPI	GGNCC	4 cut(s)	45, 61, 185, 186
RsaI	GTAC	2 cut(s)	41, 173
RsaNI	GTAC	2 cut(s)	40, 172
SacI	GAGCTC	1 cut(s)	287
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	4 cut(s)	35, 326, 329, 332
Sau96I	GGNCC	4 cut(s)	45, 61, 185, 186
SchI	GAGTC	1 cut(s)	18
SduI	GDGCHC	3 cut(s)	88, 189, 287
SetI	ASST	5 cut(s)	17, 210, 287, 323, 387
SinI	GGWCC	1 cut(s)	45
Sse9I	AATT	1 cut(s)	142
SsiI	CCGC	6 cut(s)	32, 35, 120, 326, 329, 332
SspMI	CTAG	1 cut(s)	339
SstI	GAGCTC	1 cut(s)	287
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	2 cut(s)	176, 316
TaiI	ACGT	1 cut(s)	323
TaqI	TCGA	2 cut(s)	231, 378
TaqII	GACCGA	1 cut(s)	62
TasI	AATT	1 cut(s)	142
TauI	GCSGC	4 cut(s)	37, 328, 331, 334
TfiI	GAWTC	4 cut(s)	56, 164, 194, 215
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TseFI	GTSAC	2 cut(s)	208, 316
Tsp45I	GTSAC	2 cut(s)	208, 316
TspDTI	ATGAA	1 cut(s)	69
TspGWI	ACGGA	1 cut(s)	277
VpaK11BI	GGWCC	1 cut(s)	45
XmnI	GAANNNNTTC	1 cut(s)	113
XspI	CTAG	1 cut(s)	339
ZraI	GACGTC	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.