RLG00000011898

Leucine carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0011175
Physical Location & Seq
Reverse (-)
13620593 .. 13622634
2042 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011898

Sequence Viewer

Length: 954 bp
ATGGACTCTTTACTGGGCTTCCTACAATCCCCAGCTACTGCCATCTTGCGCCGCCCGCTAATCTCCACTTCAAGACCAAACAGAAATGCCGGGTTGAGTTTCAGAGCAAAACCCAACGACGCAATTGACCCATTACTCCACGACGCAGTTAATTCAGCTTCTCTTCGTTTCCGTGAGACCCATCGACCAGAGCCTCTCTTTGTTGATCCGTATGCCGGTTGCTTTGTTGATCCTAATGCGCAGATGGACATGAAGCAATGCTCACACCATTATTGCATTGCAACTAAGTACATTGATGATAAGTTGCTTCGTACAGTGAACCATATTGAGGGACTTAAGCAGGTTGTTTTGCTAACAGATGGCATGGACACTCGGCCGTATAGGCTTAGTTGGCCAACTTCAACCATTATTTTTGATATTTCGCCAGACTGGGTATTCAGTGGAGCAGCTGAAAAGCTTAAAGGTGTTGGGGCTAAAATCCCAAGAAGCTGCTTATTCCTTCATGTTCCATTGGAGTCCTCCAATTTGCAGCAAACTCTACGTGCTAAAGGCTTCAATGGTAACCGGCCTAGTATATGGGCCATGCAGGGACTGCCCGTAATGACATTGGCAAATTTTGAGGACATTTTGCTCACTGTAAGTGGTTTGTCCATGAATGGATGTGGCTTTTTGGGAGAATTGCCTGCTTGGTTGGCAGAGACTGAAATAGTGACCAAGACTAGTACAAGGGAATGGATGGAGAAATTATTCATGAACAACGGCTTTCGGGTGGACATGATTCGCTATGAAGAAGTTGCAAAGAGTTTAGGCAAGAAATTAGCAGCAGGACCTTATAAGAATATACTATTTTCCTCAGAACAACTGCGGTTTTCTGATGATCAGATGGAAACTTGGAGAAGGGAATTTCAAAGAGTTGAGGAACAAGGGGATGAAGAAGGTTTTGAAGAGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
LCM

Protein Analysis

318

Amino Acids

35.88

Weight (kDa)

5.94

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LCM PF04072 49 - 198 1.4e-22 Leucine carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02405 AT4G02405
fragaria_vesca FvH4_2g25800 FvH4_2g25800
malus_domestica MD03G1288800.v1.1 MD11G1309100.v1.1
prunus_persica Prupe.8G262100_v2.0.a1
pyrus_communis pycom03g22890 pycom11g27040
rosa_chinensis RchiOBHm_Chr6g0294111
rosa_laevigata RLG00000011898
rosa_multiflora Rmu_sc0005037.1_g000010
rosa_roxburghii Rroxscaffold_7G00173640
rosa_rugosa Rorug06G0241200 Rorug06G0241300
rosa_samantha Rh6AG353900 Rh6BG360800 Rh6CG368000 Rh6DG354700
rosa_wichuraiana Rw6G030840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 834
Acc16I TGCGCA 1 cut(s) 240
Acc36I ACCTGC 1 cut(s) 331
AciI CCGC 3 cut(s) 52, 56, 865
AclWI GGATC 2 cut(s) 200, 224
AcoI YGGCCR 2 cut(s) 374, 392
AcsI RAATTY 2 cut(s) 613, 902
AfaI GTAC 3 cut(s) 290, 313, 724
AfiI CCNNNNNNNGG 2 cut(s) 215, 328
AflII CTTAAG 1 cut(s) 335
AgsI TTSAA 5 cut(s) 72, 402, 556, 908, 944
AhlI ACTAGT 1 cut(s) 719
AluBI AGCT 6 cut(s) 35, 158, 449, 457, 489, 949
AluI AGCT 6 cut(s) 35, 158, 449, 457, 489, 949
Alw26I GTCTC 2 cut(s) 170, 692
AlwI GGATC 2 cut(s) 200, 224
AlwNI CAGNNNCTG 3 cut(s) 38, 592, 701
AoxI GGCC 4 cut(s) 374, 392, 566, 579
ApeKI GCWGC 4 cut(s) 446, 489, 529, 821
ApoI RAATTY 2 cut(s) 613, 902
Asp700I GAANNNNTTC 1 cut(s) 746
AspLEI GCGC 2 cut(s) 51, 241
AspS9I GGNCC 2 cut(s) 579, 827
AsuC2I CCSGG 1 cut(s) 91
AvaII GGWCC 1 cut(s) 827
BalI TGGCCA 1 cut(s) 394
BbvI GCAGC 4 cut(s) 458, 476, 541, 833
BccI CCATC 6 cut(s) 50, 189, 238, 353, 730, 877
BceAI ACGGC 2 cut(s) 361, 775
BclI TGATCA 1 cut(s) 877
BcnI CCSGG 1 cut(s) 91
BcoDI GTCTC 2 cut(s) 170, 692
BcuI ACTAGT 1 cut(s) 719
BfaI CTAG 2 cut(s) 570, 720
BfrI CTTAAG 1 cut(s) 335
BfuAI ACCTGC 1 cut(s) 331
BglI GCCNNNNNGGC 1 cut(s) 382
BisI GCNGC 5 cut(s) 52, 447, 490, 530, 822
BlsI GCNGC 5 cut(s) 53, 448, 491, 531, 823
Bme1390I CCNGG 1 cut(s) 91
Bme18I GGWCC 1 cut(s) 827
BmgT120I GGNCC 2 cut(s) 579, 827
BmrFI CCNGG 1 cut(s) 91
BmrI ACTGGG 2 cut(s) 23, 439
BmuI ACTGGG 2 cut(s) 23, 439
BpuMI CCSGG 1 cut(s) 91
BsaAI YACGTR 1 cut(s) 542
BsaI GGTCTC 1 cut(s) 170
Bsc4I CCNNNNNNNGG 2 cut(s) 215, 328
Bse118I RCCGGY 2 cut(s) 215, 564
Bse1I ACTGG 2 cut(s) 18, 434
Bse3DI GCAATG 2 cut(s) 263, 276
BseGI GGATG 3 cut(s) 665, 741, 934
BseLI CCNNNNNNNGG 2 cut(s) 215, 328
BseMI GCAATG 2 cut(s) 263, 276
BseMII CTCAG 1 cut(s) 867
BseNI ACTGG 2 cut(s) 18, 434
BseX3I CGGCCG 1 cut(s) 374
BseXI GCAGC 4 cut(s) 458, 476, 541, 833
BseYI CCCAGC 1 cut(s) 31
Bsh1285I CGRYCG 1 cut(s) 377
BshFI GGCC 4 cut(s) 376, 394, 568, 581
BsiEI CGRYCG 1 cut(s) 377
BsiSI CCGG 3 cut(s) 90, 216, 565
BslFI GGGAC 2 cut(s) 345, 603
BslI CCNNNNNNNGG 2 cut(s) 215, 328
BsmAI GTCTC 2 cut(s) 170, 692
BsmFI GGGAC 2 cut(s) 345, 603
BsnI GGCC 4 cut(s) 376, 394, 568, 581
Bso31I GGTCTC 1 cut(s) 170
Bsp143I GATC 3 cut(s) 205, 229, 877
BspACI CCGC 3 cut(s) 52, 56, 865
BspANI GGCC 4 cut(s) 376, 394, 568, 581
BspCNI CTCAG 1 cut(s) 866
BspHI TCATGA 1 cut(s) 750
BspMI ACCTGC 1 cut(s) 331
BspPI GGATC 2 cut(s) 200, 224
BspQI GCTCTTC 1 cut(s) 939
BspTI CTTAAG 1 cut(s) 335
BspTNI GGTCTC 1 cut(s) 170
BsrDI GCAATG 2 cut(s) 263, 276
BsrFI RCCGGY 2 cut(s) 215, 564
BsrI ACTGG 2 cut(s) 18, 434
BssAI RCCGGY 2 cut(s) 215, 564
BssMI GATC 3 cut(s) 205, 229, 877
Bst4CI ACNGT 2 cut(s) 316, 637
Bst6I CTCTTC 2 cut(s) 168, 939
BstAFI CTTAAG 1 cut(s) 335
BstAPI GCANNNNNTGC 1 cut(s) 592
BstBAI YACGTR 1 cut(s) 542
BstC8I GCNNGC 2 cut(s) 56, 684
BstDEI CTNAG 3 cut(s) 285, 386, 853
BstEII GGTNACC 1 cut(s) 560
BstF5I GGATG 3 cut(s) 665, 741, 934
BstHHI GCGC 2 cut(s) 51, 241
BstKTI GATC 3 cut(s) 208, 232, 880
BstMAI GTCTC 2 cut(s) 170, 692
BstMBI GATC 3 cut(s) 205, 229, 877
BstMCI CGRYCG 1 cut(s) 377
BstMWI GCNNNNNNNGC 5 cut(s) 55, 382, 391, 592, 692
BstPI GGTNACC 1 cut(s) 560
BstSCI CCNGG 1 cut(s) 89
BstV1I GCAGC 4 cut(s) 458, 476, 541, 833
BstZI CGGCCG 1 cut(s) 374
BsuRI GGCC 4 cut(s) 376, 394, 568, 581
BtsCI GGATG 3 cut(s) 665, 741, 934
BtsIMutI CAGTG 3 cut(s) 321, 445, 633
BveI ACCTGC 1 cut(s) 331
Cac8I GCNNGC 2 cut(s) 56, 684
CaiI CAGNNNCTG 3 cut(s) 38, 592, 701
CciI TCATGA 1 cut(s) 750
CfoI GCGC 2 cut(s) 51, 241
Cfr10I RCCGGY 2 cut(s) 215, 564
Cfr13I GGNCC 2 cut(s) 579, 827
CseI GACGC 2 cut(s) 128, 152
Csp6I GTAC 3 cut(s) 289, 312, 723
CviAII CATG 7 cut(s) 250, 364, 503, 583, 652, 751, 775
CviQI GTAC 3 cut(s) 289, 312, 723
DdeI CTNAG 3 cut(s) 285, 386, 853
DpnI GATC 3 cut(s) 207, 231, 879
DpnII GATC 3 cut(s) 205, 229, 877
EaeI YGGCCR 2 cut(s) 374, 392
EagI CGGCCG 1 cut(s) 374
Eam1104I CTCTTC 2 cut(s) 168, 939
EarI CTCTTC 2 cut(s) 168, 939
EclXI CGGCCG 1 cut(s) 374
Eco31I GGTCTC 1 cut(s) 170
Eco47I GGWCC 1 cut(s) 827
Eco52I CGGCCG 1 cut(s) 374
Eco91I GGTNACC 1 cut(s) 560
EcoO109I RGGNCCY 1 cut(s) 827
EcoO65I GGTNACC 1 cut(s) 560
FaeI CATG 7 cut(s) 253, 367, 506, 586, 655, 754, 778
FaqI GGGAC 2 cut(s) 345, 603
FatI CATG 7 cut(s) 249, 363, 502, 582, 651, 750, 774
FauI CCCGC 1 cut(s) 63
FbaI TGATCA 1 cut(s) 877
Fnu4HI GCNGC 5 cut(s) 52, 447, 490, 530, 822
FokI GGATG 3 cut(s) 672, 748, 941
Fsp4HI GCNGC 5 cut(s) 52, 447, 490, 530, 822
FspBI CTAG 2 cut(s) 570, 720
FspI TGCGCA 1 cut(s) 240
GlaI GCGC 2 cut(s) 50, 240
GluI GCNGC 5 cut(s) 52, 447, 490, 530, 822
GsaI CCCAGC 1 cut(s) 35
HaeIII GGCC 4 cut(s) 376, 394, 568, 581
HapII CCGG 3 cut(s) 90, 216, 565
HgaI GACGC 2 cut(s) 128, 152
HhaI GCGC 2 cut(s) 51, 241
Hin1II CATG 7 cut(s) 253, 367, 506, 586, 655, 754, 778
Hin6I GCGC 2 cut(s) 49, 239
HinP1I GCGC 2 cut(s) 49, 239
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 3 cut(s) 5, 515, 778
HpaII CCGG 3 cut(s) 90, 216, 565
Hpy166II GTNNAC 2 cut(s) 319, 772
Hpy188I TCNGA 4 cut(s) 104, 856, 874, 882
Hpy188III TCNNGA 2 cut(s) 72, 751
Hpy8I GTNNAC 2 cut(s) 319, 772
Hpy99I CGWCG 2 cut(s) 122, 146
HpyAV CCTTC 3 cut(s) 509, 891, 929
HpyCH4III ACNGT 2 cut(s) 316, 637
HpyCH4IV ACGT 1 cut(s) 541
HpyCH4V TGCA 5 cut(s) 276, 281, 529, 586, 797
HpyF10VI GCNNNNNNNGC 5 cut(s) 55, 382, 391, 592, 692
HpyF3I CTNAG 3 cut(s) 285, 386, 853
HpySE526I ACGT 1 cut(s) 541
Hsp92II CATG 7 cut(s) 253, 367, 506, 586, 655, 754, 778
HspAI GCGC 2 cut(s) 49, 239
Ksp22I TGATCA 1 cut(s) 877
Kzo9I GATC 3 cut(s) 205, 229, 877
LguI GCTCTTC 1 cut(s) 939
LmnI GCTCC 1 cut(s) 443
Lsp1109I GCAGC 4 cut(s) 458, 476, 541, 833
MaeI CTAG 2 cut(s) 570, 720
MaeII ACGT 1 cut(s) 541
MaeIII GTNAC 2 cut(s) 560, 709
MalI GATC 3 cut(s) 207, 231, 879
MboI GATC 3 cut(s) 205, 229, 877
MboII GAAGA 3 cut(s) 155, 800, 944
MfeI CAATTG 1 cut(s) 123
MlsI TGGCCA 1 cut(s) 394
MluCI AATT 8 cut(s) 123, 151, 523, 613, 677, 743, 815, 902
MluNI TGGCCA 1 cut(s) 394
MlyI GAGTC 1 cut(s) 524
MnlI CCTC 6 cut(s) 204, 322, 529, 613, 862, 910
Mox20I TGGCCA 1 cut(s) 394
MroXI GAANNNNTTC 1 cut(s) 746
MscI TGGCCA 1 cut(s) 394
MseI TTAA 3 cut(s) 150, 336, 459
Msp20I TGGCCA 1 cut(s) 394
MspA1I CMGCKG 1 cut(s) 449
MspCI CTTAAG 1 cut(s) 335
MspI CCGG 3 cut(s) 90, 216, 565
MspR9I CCNGG 1 cut(s) 91
MunI CAATTG 1 cut(s) 123
MwoI GCNNNNNNNGC 5 cut(s) 55, 382, 391, 592, 692
NciI CCSGG 1 cut(s) 91
NdeII GATC 3 cut(s) 205, 229, 877
NlaIII CATG 7 cut(s) 253, 367, 506, 586, 655, 754, 778
NmeAIII GCCGAG 1 cut(s) 352
NmuCI GTSAC 1 cut(s) 709
NsbI TGCGCA 1 cut(s) 240
PagI TCATGA 1 cut(s) 750
PciSI GCTCTTC 1 cut(s) 939
PdmI GAANNNNTTC 1 cut(s) 746
PfeI GAWTC 1 cut(s) 778
PkrI GCNGC 5 cut(s) 53, 448, 491, 531, 823
PleI GAGTC 1 cut(s) 523
PpsI GAGTC 1 cut(s) 523
Ppu21I YACGTR 1 cut(s) 542
PpuMI RGGWCCY 1 cut(s) 827
PsiI TTATAA 1 cut(s) 834
Psp5II RGGWCCY 1 cut(s) 827
PspEI GGTNACC 1 cut(s) 560
PspFI CCCAGC 1 cut(s) 31
PspPI GGNCC 2 cut(s) 579, 827
PspPPI RGGWCCY 1 cut(s) 827
PstNI CAGNNNCTG 3 cut(s) 38, 592, 701
PvuII CAGCTG 1 cut(s) 449
RsaI GTAC 3 cut(s) 290, 313, 724
RsaNI GTAC 3 cut(s) 289, 312, 723
SapI GCTCTTC 1 cut(s) 939
SaqAI TTAA 3 cut(s) 150, 336, 459
SatI GCNGC 5 cut(s) 52, 447, 490, 530, 822
Sau3AI GATC 3 cut(s) 205, 229, 877
Sau96I GGNCC 2 cut(s) 579, 827
SchI GAGTC 1 cut(s) 524
ScrFI CCNGG 1 cut(s) 91
SinI GGWCC 1 cut(s) 827
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
SpeI ACTAGT 1 cut(s) 719
Sse9I AATT 8 cut(s) 123, 151, 523, 613, 677, 743, 815, 902
SsiI CCGC 3 cut(s) 52, 56, 865
SspMI CTAG 2 cut(s) 570, 720
StyD4I CCNGG 1 cut(s) 89
TaaI ACNGT 2 cut(s) 316, 637
TaiI ACGT 1 cut(s) 544
TaqI TCGA 1 cut(s) 184
TasI AATT 8 cut(s) 123, 151, 523, 613, 677, 743, 815, 902
TatI WGTACW 2 cut(s) 288, 722
TauI GCSGC 1 cut(s) 54
TfiI GAWTC 1 cut(s) 778
Tru1I TTAA 3 cut(s) 150, 336, 459
Tru9I TTAA 3 cut(s) 150, 336, 459
TscAI CASTG 3 cut(s) 321, 445, 640
TseFI GTSAC 1 cut(s) 709
TseI GCWGC 4 cut(s) 446, 489, 529, 821
Tsp45I GTSAC 1 cut(s) 709
TspDTI ATGAA 7 cut(s) 266, 491, 668, 739, 767, 801, 945
TspGWI ACGGA 2 cut(s) 161, 198
TspRI CASTG 3 cut(s) 321, 445, 640
Vha464I CTTAAG 1 cut(s) 335
VpaK11BI GGWCC 1 cut(s) 827
XapI RAATTY 2 cut(s) 613, 902
XmnI GAANNNNTTC 1 cut(s) 746
XspI CTAG 2 cut(s) 570, 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.