Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004945

Physical Location & Seq

Genomic Coordinates Forward (+)

57376150 .. 57378714

Gene Structure 2565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014771

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAAACTTGAACGGAACGGAGTCAAAGGACCACTAACAACCTTCGCCATACCGAATTATGAGAGTACCACTTCGGTCACGGAGGGCTTGATGCTACTTCACTCAGGAATAAAGGGTTTGAAGAAGGAAGAGATCGATTTAGGTGATGATTTGGGGAAAGGTAGAGAAGCTTGTACGAAAAGCAAAACAGAGGGTGAAGAATACTACTTATTCTGGTCTGATCAACCTGAATTTGTCAGAATGGCTGTACGTTTTGGGGCCACAATTGTACCATTTGCAGCTGTAGGAGAAGATGACTCACTCGAATTGATTCTCGACTACAATGACATAAAGAAGATCCCTGTGGTACGCGACTATCTCACCGATGCTATAAAATTGAGGGAGGATGCAAGTGGAGAAGTTGCCAACCAAGACCTCTTCTTTCCGGGAATTCTGCCCAAGTTACCAGGCCGCTATTACCATTTGTTTGGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010287 GO:0016101 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0019432 GO:0033306 GO:0034308 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:1901576 GO:1901615 GO:1903173

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DAGAT Hydrolase_4

Protein Analysis

159

Amino Acids

17.68

Weight (kDa)

4.9

Isoelectric Point (pI)

32.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54570
fragaria_vesca	FvH4_6g03990 FvH4_6g04000
malus_domestica	MD04G1216900.v1.1 MD12G1233500.v1.1
prunus_persica	Prupe.6G336800_v2.0.a1 Prupe.6G336800_v2.0.a1 Prupe.6G336800_v2.0.a1 Prupe.6G336800_v2.0.a1
pyrus_communis	pycom04g19300 pycom12g21610
rosa_chinensis	RchiOBHm_Chr3g0452581
rosa_laevigata	RLG00000014771 RLG00000025582
rosa_multiflora	Rmu_co8485569.1_g000001 Rmu_sc0004414.1_g000004 Rmu_sc0028651.1_g000001 Rmu_sc0032164.1_g000001
rosa_roxburghii	Rroxscaffold_6G00429620 Rroxscaffold_7G00209280 Rroxscaffold_7G00209300
rosa_rugosa	Rorug02G0641400 Rorug02G0641500 Rorug02G0641500
rosa_samantha	Rh3AG044000 Rh3BG046100 Rh3CG044800 Rh3DG045100
rosa_wichuraiana	Rw3G003410 Rw6G007390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	351
AciI	CCGC	1 cut(s)	451
AclWI	GGATC	1 cut(s)	331
AcsI	RAATTY	2 cut(s)	230, 429
AfaI	GTAC	5 cut(s)	67, 175, 249, 270, 348
AgsI	TTSAA	2 cut(s)	11, 121
AjnI	CCWGG	1 cut(s)	445
AluBI	AGCT	2 cut(s)	170, 281
AluI	AGCT	2 cut(s)	170, 281
AlwI	GGATC	1 cut(s)	331
AoxI	GGCC	2 cut(s)	258, 448
ApeKI	GCWGC	1 cut(s)	278
ApoI	RAATTY	2 cut(s)	230, 429
Asp700I	GAANNNNTTC	1 cut(s)	309
AspS9I	GGNCC	2 cut(s)	29, 258
AsuC2I	CCSGG	1 cut(s)	426
AsuHPI	GGTGA	3 cut(s)	155, 206, 352
AvaII	GGWCC	1 cut(s)	29
BaeI	ACNNNNGTAYC	2 cut(s)	252, 285
BbvI	GCAGC	1 cut(s)	290
BciT130I	CCWGG	1 cut(s)	447
BclI	TGATCA	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	426
BfmI	CTRYAG	1 cut(s)	282
BisI	GCNGC	2 cut(s)	279, 451
BlsI	GCNGC	2 cut(s)	280, 452
Bme1390I	CCNGG	2 cut(s)	426, 447
Bme18I	GGWCC	1 cut(s)	29
BmgT120I	GGNCC	2 cut(s)	29, 258
BmiI	GGNNCC	1 cut(s)	259
BmrFI	CCNGG	2 cut(s)	426, 447
BmsI	GCATC	3 cut(s)	81, 355, 376
BpuMI	CCSGG	1 cut(s)	426
Bsa29I	ATCGAT	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	447
BseCI	ATCGAT	1 cut(s)	135
BseGI	GGATG	1 cut(s)	391
BseMII	CTCAG	1 cut(s)	117
BseXI	GCAGC	1 cut(s)	290
Bsh1236I	CGCG	1 cut(s)	351
BshFI	GGCC	2 cut(s)	260, 450
BshVI	ATCGAT	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	425
BsnI	GGCC	2 cut(s)	260, 450
Bsp143I	GATC	3 cut(s)	132, 220, 336
BspACI	CCGC	1 cut(s)	451
BspANI	GGCC	2 cut(s)	260, 450
BspCNI	CTCAG	1 cut(s)	116
BspDI	ATCGAT	1 cut(s)	135
BspFNI	CGCG	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	259
BspPI	GGATC	1 cut(s)	331
BssMI	GATC	3 cut(s)	132, 220, 336
Bst2UI	CCWGG	1 cut(s)	447
Bst6I	CTCTTC	2 cut(s)	123, 422
BstDEI	CTNAG	1 cut(s)	103
BstF5I	GGATG	1 cut(s)	391
BstFNI	CGCG	1 cut(s)	351
BstKTI	GATC	3 cut(s)	135, 223, 339
BstMBI	GATC	3 cut(s)	132, 220, 336
BstNI	CCWGG	1 cut(s)	447
BstSCI	CCNGG	2 cut(s)	424, 445
BstSFI	CTRYAG	1 cut(s)	282
BstUI	CGCG	1 cut(s)	351
BstV1I	GCAGC	1 cut(s)	290
BstX2I	RGATCY	1 cut(s)	336
BstXI	CCANNNNNNTGG	1 cut(s)	467
BstYI	RGATCY	1 cut(s)	336
Bsu15I	ATCGAT	1 cut(s)	135
BsuRI	GGCC	2 cut(s)	260, 450
BsuTUI	ATCGAT	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	391
Cfr13I	GGNCC	2 cut(s)	29, 258
ClaI	ATCGAT	1 cut(s)	135
Csp6I	GTAC	5 cut(s)	66, 174, 248, 269, 347
CviJI	RGCY	6 cut(s)	87, 170, 245, 260, 281, 450
CviKI_1	RGCY	6 cut(s)	87, 170, 245, 260, 281, 450
CviQI	GTAC	5 cut(s)	66, 174, 248, 269, 347
DdeI	CTNAG	1 cut(s)	103
DpnI	GATC	3 cut(s)	134, 222, 338
DpnII	GATC	3 cut(s)	132, 220, 336
Eam1104I	CTCTTC	2 cut(s)	123, 422
EarI	CTCTTC	2 cut(s)	123, 422
Eco47I	GGWCC	1 cut(s)	29
EcoRI	GAATTC	1 cut(s)	429
EcoRII	CCWGG	1 cut(s)	445
FaiI	YATR	4 cut(s)	50, 60, 329, 371
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	2 cut(s)	279, 451
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	2 cut(s)	279, 451
GluI	GCNGC	2 cut(s)	279, 451
HaeIII	GGCC	2 cut(s)	260, 450
HapII	CCGG	1 cut(s)	425
HindIII	AAGCTT	1 cut(s)	168
HinfI	GANTC	3 cut(s)	21, 296, 310
HpaII	CCGG	1 cut(s)	425
HphI	GGTGA	3 cut(s)	155, 206, 352
Hpy188I	TCNGA	2 cut(s)	220, 239
Hpy188III	TCNNGA	2 cut(s)	105, 314
HpyAV	CCTTC	2 cut(s)	52, 118
HpyCH4IV	ACGT	1 cut(s)	250
HpyCH4V	TGCA	2 cut(s)	278, 389
HpyF3I	CTNAG	1 cut(s)	103
HpySE526I	ACGT	1 cut(s)	250
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	132, 220, 336
LpnPI	CCDG	7 cut(s)	90, 199, 240, 354, 432, 438, 459
Lsp1109I	GCAGC	1 cut(s)	290
LweI	GCATC	3 cut(s)	81, 355, 376
MaeII	ACGT	1 cut(s)	250
MaeIII	GTNAC	2 cut(s)	76, 441
MalI	GATC	3 cut(s)	134, 222, 338
MboI	GATC	3 cut(s)	132, 220, 336
MboII	GAAGA	6 cut(s)	133, 140, 209, 302, 346, 409
MfeI	CAATTG	1 cut(s)	264
MflI	RGATCY	1 cut(s)	336
MluCI	AATT	6 cut(s)	55, 230, 264, 305, 374, 429
MlyI	GAGTC	2 cut(s)	30, 290
MnlI	CCTC	5 cut(s)	76, 184, 372, 376, 425
MroXI	GAANNNNTTC	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	1 cut(s)	425
MspR9I	CCNGG	2 cut(s)	426, 447
MunI	CAATTG	1 cut(s)	264
MvaI	CCWGG	1 cut(s)	447
MvnI	CGCG	1 cut(s)	351
NciI	CCSGG	1 cut(s)	426
NdeII	GATC	3 cut(s)	132, 220, 336
NlaIV	GGNNCC	1 cut(s)	259
NmuCI	GTSAC	1 cut(s)	76
PdmI	GAANNNNTTC	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	310
PfoI	TCCNGGA	1 cut(s)	424
PkrI	GCNGC	2 cut(s)	280, 452
PleI	GAGTC	2 cut(s)	29, 290
PpsI	GAGTC	2 cut(s)	29, 290
Psp6I	CCWGG	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	445
PspN4I	GGNNCC	1 cut(s)	259
PspPI	GGNCC	2 cut(s)	29, 258
PsuI	RGATCY	1 cut(s)	336
PvuII	CAGCTG	1 cut(s)	281
RsaI	GTAC	5 cut(s)	67, 175, 249, 270, 348
RsaNI	GTAC	5 cut(s)	66, 174, 248, 269, 347
SatI	GCNGC	2 cut(s)	279, 451
Sau3AI	GATC	3 cut(s)	132, 220, 336
Sau96I	GGNCC	2 cut(s)	29, 258
SchI	GAGTC	2 cut(s)	30, 290
ScrFI	CCNGG	2 cut(s)	426, 447
SetI	ASST	8 cut(s)	44, 145, 163, 172, 229, 253, 283, 417
SfaNI	GCATC	3 cut(s)	81, 355, 376
SfcI	CTRYAG	1 cut(s)	282
SinI	GGWCC	1 cut(s)	29
Sse9I	AATT	6 cut(s)	55, 230, 264, 305, 374, 429
SsiI	CCGC	1 cut(s)	451
StyD4I	CCNGG	2 cut(s)	424, 445
TaiI	ACGT	1 cut(s)	253
TaqI	TCGA	3 cut(s)	135, 303, 315
TaqII	GACCGA	1 cut(s)	64
TasI	AATT	6 cut(s)	55, 230, 264, 305, 374, 429
TauI	GCSGC	1 cut(s)	453
TfiI	GAWTC	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	3 cut(s)	28, 33, 95
VpaK11BI	GGWCC	1 cut(s)	29
XapI	RAATTY	2 cut(s)	230, 429
XmnI	GAANNNNTTC	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.