Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004945

Physical Location & Seq

Genomic Coordinates Forward (+)

12142453 .. 12154118

Gene Structure 11666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G007390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGAAAGCTTCTGGTCCTGACTTCGCACAAAACAAGGGTCTGGTCCCAAACTTCAGCAGAGAGAAAAAGGGTGAAGAATACAACTTTTTATGGCCTGATCAACCTAAATTTATCAGAATGGCTGCACGTTTTGGGGTCACAATTGTACCATTTGCAGCTGTAGGAGAAGATGACTTACTCGAATCGGTTCTCGACTACAATGACATAAAGAAGATCCCTGTGGTGCGCGATTATCTCGCCGATGCTAATAATGATGCTATAAAATTGAGCATCCTATCTTTTCTCTGTCTCTCTCCCAACCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010287 GO:0016101 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0019432 GO:0033306 GO:0034308 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:1901576 GO:1901615 GO:1903173

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DAGAT Hydrolase_4

Protein Analysis

101

Amino Acids

11.34

Weight (kDa)

5.01

Isoelectric Point (pI)

26.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54570
fragaria_vesca	FvH4_6g03990 FvH4_6g04000
malus_domestica	MD04G1216900.v1.1 MD12G1233500.v1.1
prunus_persica	Prupe.6G336800_v2.0.a1 Prupe.6G336800_v2.0.a1 Prupe.6G336800_v2.0.a1 Prupe.6G336800_v2.0.a1
pyrus_communis	pycom04g19300 pycom12g21610
rosa_chinensis	RchiOBHm_Chr3g0452581
rosa_laevigata	RLG00000014771 RLG00000025582
rosa_multiflora	Rmu_co8485569.1_g000001 Rmu_sc0004414.1_g000004 Rmu_sc0028651.1_g000001 Rmu_sc0032164.1_g000001
rosa_roxburghii	Rroxscaffold_6G00429620 Rroxscaffold_7G00209280 Rroxscaffold_7G00209300
rosa_rugosa	Rorug02G0641400 Rorug02G0641500 Rorug02G0641500
rosa_samantha	Rh3AG044000 Rh3BG046100 Rh3CG044800 Rh3DG045100
rosa_wichuraiana	Rw3G003410 Rw6G007390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	228
AclWI	GGATC	1 cut(s)	208
AcsI	RAATTY	1 cut(s)	107
AcuI	CTGAAG	1 cut(s)	37
AfaI	GTAC	1 cut(s)	147
AluBI	AGCT	2 cut(s)	8, 158
AluI	AGCT	2 cut(s)	8, 158
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	1 cut(s)	208
AoxI	GGCC	1 cut(s)	92
ApeKI	GCWGC	2 cut(s)	122, 155
ApoI	RAATTY	1 cut(s)	107
ArsI	GACNNNNNNTTYG	2 cut(s)	22, 54
Asp700I	GAANNNNTTC	1 cut(s)	186
AspLEI	GCGC	1 cut(s)	228
AspS9I	GGNCC	2 cut(s)	14, 43
AsuHPI	GGTGA	1 cut(s)	83
AvaII	GGWCC	2 cut(s)	14, 43
BaeI	ACNNNNGTAYC	2 cut(s)	129, 162
BarI	GAAGNNNNNNTAC	2 cut(s)	159, 191
BbvI	GCAGC	2 cut(s)	109, 167
BclI	TGATCA	1 cut(s)	97
BcoDI	GTCTC	1 cut(s)	293
BfmI	CTRYAG	1 cut(s)	159
BisI	GCNGC	2 cut(s)	123, 156
BlsI	GCNGC	2 cut(s)	124, 157
Bme18I	GGWCC	2 cut(s)	14, 43
BmgT120I	GGNCC	2 cut(s)	14, 43
BmiI	GGNNCC	1 cut(s)	45
BmsI	GCATC	3 cut(s)	232, 244, 279
BseGI	GGATG	1 cut(s)	270
BseXI	GCAGC	2 cut(s)	109, 167
BsgI	GTGCAG	1 cut(s)	108
Bsh1236I	CGCG	1 cut(s)	228
BshFI	GGCC	1 cut(s)	94
BslFI	GGGAC	1 cut(s)	29
BsmAI	GTCTC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	29
BsnI	GGCC	1 cut(s)	94
Bsp143I	GATC	2 cut(s)	97, 213
BspANI	GGCC	1 cut(s)	94
BspFNI	CGCG	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	45
BspPI	GGATC	1 cut(s)	208
BssMI	GATC	2 cut(s)	97, 213
BstF5I	GGATG	1 cut(s)	270
BstFNI	CGCG	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	2 cut(s)	100, 216
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	2 cut(s)	97, 213
BstSFI	CTRYAG	1 cut(s)	159
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	2 cut(s)	109, 167
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	270
CfoI	GCGC	1 cut(s)	228
Cfr13I	GGNCC	2 cut(s)	14, 43
Csp6I	GTAC	1 cut(s)	146
CviJI	RGCY	4 cut(s)	8, 94, 122, 158
CviKI_1	RGCY	4 cut(s)	8, 94, 122, 158
CviQI	GTAC	1 cut(s)	146
DpnI	GATC	2 cut(s)	99, 215
DpnII	GATC	2 cut(s)	97, 213
Eco47I	GGWCC	2 cut(s)	14, 43
Eco57I	CTGAAG	1 cut(s)	37
FaiI	YATR	3 cut(s)	91, 206, 260
FaqI	GGGAC	1 cut(s)	29
FbaI	TGATCA	1 cut(s)	97
Fnu4HI	GCNGC	2 cut(s)	123, 156
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	2 cut(s)	123, 156
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	2 cut(s)	123, 156
HaeIII	GGCC	1 cut(s)	94
HhaI	GCGC	1 cut(s)	228
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HindIII	AAGCTT	1 cut(s)	6
HinfI	GANTC	1 cut(s)	182
HphI	GGTGA	1 cut(s)	83
Hpy188I	TCNGA	1 cut(s)	116
Hpy188III	TCNNGA	2 cut(s)	17, 191
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	2 cut(s)	125, 155
HpySE526I	ACGT	1 cut(s)	127
HspAI	GCGC	1 cut(s)	226
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	2 cut(s)	97, 213
LpnPI	CCDG	4 cut(s)	26, 30, 108, 231
Lsp1109I	GCAGC	2 cut(s)	109, 167
LweI	GCATC	3 cut(s)	232, 244, 279
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	2 cut(s)	99, 215
MboI	GATC	2 cut(s)	97, 213
MboII	GAAGA	3 cut(s)	86, 179, 223
MfeI	CAATTG	1 cut(s)	141
MflI	RGATCY	1 cut(s)	213
MluCI	AATT	3 cut(s)	107, 141, 263
MroXI	GAANNNNTTC	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	158
MunI	CAATTG	1 cut(s)	141
MvnI	CGCG	1 cut(s)	228
NdeII	GATC	2 cut(s)	97, 213
NlaIV	GGNNCC	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	2 cut(s)	124, 157
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	2 cut(s)	14, 43
PsuI	RGATCY	1 cut(s)	213
PvuII	CAGCTG	1 cut(s)	158
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
SatI	GCNGC	2 cut(s)	123, 156
Sau3AI	GATC	2 cut(s)	97, 213
Sau96I	GGNCC	2 cut(s)	14, 43
SetI	ASST	4 cut(s)	10, 106, 130, 160
SfaNI	GCATC	3 cut(s)	232, 244, 279
SfcI	CTRYAG	1 cut(s)	159
SinI	GGWCC	2 cut(s)	14, 43
Sse9I	AATT	3 cut(s)	107, 141, 263
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	2 cut(s)	180, 192
TasI	AATT	3 cut(s)	107, 141, 263
TfiI	GAWTC	1 cut(s)	182
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	2 cut(s)	122, 155
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	2 cut(s)	14, 43
XapI	RAATTY	1 cut(s)	107
XmnI	GAANNNNTTC	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.