Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8485569.1

Orthogroup ID

OG0004945

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2355

Gene Structure 2355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8485569.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 727 bp

cggtttcgagtgcaagttaggagtttaggtaatcaggatgcgtcagttttgccttcagactcggttgtagtgaatggagcttctgtagttggggagagggagggaagtaggcctttggttgatcaagggaatgggagtttgaggcataaggttaaggagaaacagaggatagaagatggtgttctcgaaagtttggaacctttgtgggatgatgggtatgggactgtgactgtaaaggattatttcgatgcaactgaggagatgattaagcctgatggtggtcctccccgatggtttagcccccttgcgcgcaaccctccattgaaggattctccagttcttttgtttttgcctgggttagatggtactgggtgcggactcattttgcatcataaagctcttcagaaggtctttgaagttcgatgcttgcatattccagttaacgatcgaacaccatttgaagggctggtgaaattggtggaagaaactattagggttgagcatgctttatctcccaacaagccaatttatttggtaggagattcttttggaggatgcctatcacttgccattgctgcacgtaatcctaccgttgacctagtactgatactaatcaacccagcaacatccatcgagaggtctcagttgctacctctgttcccaatcttggaggctatgcctgaagaattacatatcacagttccctatcttctcagctttgtaatgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010287 GO:0016101 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0019432 GO:0033306 GO:0034308 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:1901576 GO:1901615 GO:1903173

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DAGAT Hydrolase_4

Protein Analysis

242

Amino Acids

26.63

Weight (kDa)

5.41

Isoelectric Point (pI)

56.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54570
fragaria_vesca	FvH4_6g03990 FvH4_6g04000
malus_domestica	MD04G1216900.v1.1 MD12G1233500.v1.1
prunus_persica	Prupe.6G336800_v2.0.a1 Prupe.6G336800_v2.0.a1 Prupe.6G336800_v2.0.a1 Prupe.6G336800_v2.0.a1
pyrus_communis	pycom04g19300 pycom12g21610
rosa_chinensis	RchiOBHm_Chr3g0452581
rosa_laevigata	RLG00000014771 RLG00000025582
rosa_multiflora	Rmu_co8485569.1_g000001 Rmu_sc0004414.1_g000004 Rmu_sc0028651.1_g000001 Rmu_sc0032164.1_g000001
rosa_roxburghii	Rroxscaffold_6G00429620 Rroxscaffold_7G00209280 Rroxscaffold_7G00209300
rosa_rugosa	Rorug02G0641400 Rorug02G0641500 Rorug02G0641500
rosa_samantha	Rh3AG044000 Rh3BG046100 Rh3CG044800 Rh3DG045100
rosa_wichuraiana	Rw3G003410 Rw6G007390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	310
AciI	CCGC	1 cut(s)	375
AcuI	CTGAAG	3 cut(s)	39, 386, 702
AfaI	GTAC	2 cut(s)	367, 603
AfiI	CCNNNNNNNGG	4 cut(s)	278, 461, 636, 667
AgsI	TTSAA	3 cut(s)	325, 416, 461
AjnI	CCWGG	1 cut(s)	352
AluBI	AGCT	3 cut(s)	80, 398, 717
AluI	AGCT	3 cut(s)	80, 398, 717
Alw26I	GTCTC	1 cut(s)	645
AoxI	GGCC	1 cut(s)	110
ApeKI	GCWGC	1 cut(s)	575
AspLEI	GCGC	2 cut(s)	310, 312
AspS9I	GGNCC	1 cut(s)	281
AsuHPI	GGTGA	1 cut(s)	481
AvaII	GGWCC	1 cut(s)	281
BbvI	GCAGC	1 cut(s)	562
BccI	CCATC	6 cut(s)	170, 206, 269, 285, 356, 638
BciT130I	CCWGG	1 cut(s)	354
BclI	TGATCA	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	645
BfaI	CTAG	1 cut(s)	599
BfmI	CTRYAG	1 cut(s)	84
BisI	GCNGC	1 cut(s)	576
BlsI	GCNGC	1 cut(s)	577
BmcAI	AGTACT	1 cut(s)	603
Bme1390I	CCNGG	1 cut(s)	354
Bme18I	GGWCC	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	281
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	1 cut(s)	354
BmrI	ACTGGG	1 cut(s)	378
BmsI	GCATC	5 cut(s)	28, 238, 397, 413, 545
BmuI	ACTGGG	1 cut(s)	378
BpmI	CTGGAG	1 cut(s)	318
BsaAI	YACGTR	1 cut(s)	581
BsaBI	GATNNNNATC	2 cut(s)	559, 611
BsaI	GGTCTC	1 cut(s)	645
BsaJI	CCNNGG	1 cut(s)	353
BsaXI	ACNNNNNCTCC	4 cut(s)	13, 43, 69, 99
Bsc4I	CCNNNNNNNGG	4 cut(s)	278, 461, 636, 667
Bse1I	ACTGG	3 cut(s)	335, 373, 437
Bse3DI	GCAATG	1 cut(s)	570
Bse8I	GATNNNNATC	2 cut(s)	559, 611
BseBI	CCWGG	1 cut(s)	354
BseDI	CCNNGG	1 cut(s)	353
BseGI	GGATG	4 cut(s)	43, 214, 560, 626
BseJI	GATNNNNATC	2 cut(s)	559, 611
BseLI	CCNNNNNNNGG	4 cut(s)	278, 461, 636, 667
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	3 cut(s)	246, 656, 727
BseNI	ACTGG	3 cut(s)	335, 373, 437
BsePI	GCGCGC	1 cut(s)	308
BseRI	GAGGAG	1 cut(s)	272
BseXI	GCAGC	1 cut(s)	562
BseYI	CCCAGC	1 cut(s)	619
BsgI	GTGCAG	1 cut(s)	561
Bsh1236I	CGCG	1 cut(s)	310
Bsh1285I	CGRYCG	1 cut(s)	448
BshFI	GGCC	1 cut(s)	112
BsiEI	CGRYCG	1 cut(s)	448
BslFI	GGGAC	1 cut(s)	235
BslI	CCNNNNNNNGG	4 cut(s)	278, 461, 636, 667
BsmAI	GTCTC	1 cut(s)	645
BsmFI	GGGAC	1 cut(s)	235
BsnI	GGCC	1 cut(s)	112
Bso31I	GGTCTC	1 cut(s)	645
Bsp143I	GATC	2 cut(s)	121, 445
BspACI	CCGC	1 cut(s)	375
BspANI	GGCC	1 cut(s)	112
BspCNI	CTCAG	3 cut(s)	247, 655, 726
BspFNI	CGCG	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	198
BspQI	GCTCTTC	1 cut(s)	405
BspTNI	GGTCTC	1 cut(s)	645
BsrDI	GCAATG	1 cut(s)	570
BsrI	ACTGG	3 cut(s)	335, 373, 437
BssECI	CCNNGG	1 cut(s)	353
BssHII	GCGCGC	1 cut(s)	308
BssMI	GATC	2 cut(s)	121, 445
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	4 cut(s)	226, 232, 592, 700
Bst6I	CTCTTC	1 cut(s)	405
BstBAI	YACGTR	1 cut(s)	581
BstC8I	GCNNGC	3 cut(s)	310, 428, 504
BstDEI	CTNAG	3 cut(s)	255, 642, 713
BstF5I	GGATG	4 cut(s)	43, 214, 560, 626
BstFNI	CGCG	1 cut(s)	310
BstHHI	GCGC	2 cut(s)	310, 312
BstKTI	GATC	2 cut(s)	124, 448
BstMAI	GTCTC	1 cut(s)	645
BstMBI	GATC	2 cut(s)	121, 445
BstMCI	CGRYCG	1 cut(s)	448
BstMWI	GCNNNNNNNGC	1 cut(s)	575
BstNI	CCWGG	1 cut(s)	354
BstNSI	RCATGY	1 cut(s)	506
BstSCI	CCNGG	1 cut(s)	352
BstSFI	CTRYAG	1 cut(s)	84
BstUI	CGCG	1 cut(s)	310
BstV1I	GCAGC	1 cut(s)	562
BsuRI	GGCC	1 cut(s)	112
BtsCI	GGATG	4 cut(s)	43, 214, 560, 626
Cac8I	GCNNGC	3 cut(s)	310, 428, 504
CfoI	GCGC	2 cut(s)	310, 312
Cfr13I	GGNCC	1 cut(s)	281
CseI	GACGC	1 cut(s)	30
Csp6I	GTAC	2 cut(s)	366, 602
CviAII	CATG	1 cut(s)	503
CviJI	RGCY	9 cut(s)	80, 112, 271, 300, 398, 466, 523, 674, 717
CviKI_1	RGCY	9 cut(s)	80, 112, 271, 300, 398, 466, 523, 674, 717
CviQI	GTAC	2 cut(s)	366, 602
DdeI	CTNAG	3 cut(s)	255, 642, 713
DpnI	GATC	2 cut(s)	123, 447
DpnII	GATC	2 cut(s)	121, 445
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco147I	AGGCCT	1 cut(s)	112
Eco31I	GGTCTC	1 cut(s)	645
Eco47I	GGWCC	1 cut(s)	281
Eco57I	CTGAAG	3 cut(s)	39, 386, 702
EcoRII	CCWGG	1 cut(s)	352
FaeI	CATG	1 cut(s)	506
FaiI	YATR	7 cut(s)	147, 219, 393, 432, 504, 677, 693
FalI	AAGNNNNNCTT	2 cut(s)	97, 129
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	1 cut(s)	502
FbaI	TGATCA	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	576
FokI	GGATG	4 cut(s)	50, 221, 567, 613
Fsp4HI	GCNGC	1 cut(s)	576
FspBI	CTAG	1 cut(s)	599
GlaI	GCGC	2 cut(s)	309, 311
GluI	GCNGC	1 cut(s)	576
GsaI	CCCAGC	1 cut(s)	623
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	1 cut(s)	112
HgaI	GACGC	1 cut(s)	30
HhaI	GCGC	2 cut(s)	310, 312
Hin1II	CATG	1 cut(s)	506
Hin6I	GCGC	2 cut(s)	308, 310
HinP1I	GCGC	2 cut(s)	308, 310
HincII	GTYRAC	2 cut(s)	442, 595
HindII	GTYRAC	2 cut(s)	442, 595
HinfI	GANTC	4 cut(s)	59, 329, 378, 542
HpaI	GTTAAC	1 cut(s)	442
HphI	GGTGA	1 cut(s)	481
Hpy166II	GTNNAC	2 cut(s)	442, 595
Hpy188I	TCNGA	2 cut(s)	58, 405
Hpy188III	TCNNGA	3 cut(s)	35, 185, 634
Hpy8I	GTNNAC	2 cut(s)	442, 595
HpyAV	CCTTC	4 cut(s)	63, 319, 400, 455
HpyCH4III	ACNGT	4 cut(s)	226, 232, 592, 700
HpyCH4IV	ACGT	1 cut(s)	580
HpyCH4V	TGCA	5 cut(s)	13, 251, 388, 430, 578
HpyF10VI	GCNNNNNNNGC	1 cut(s)	575
HpyF3I	CTNAG	3 cut(s)	255, 642, 713
HpySE526I	ACGT	1 cut(s)	580
Hsp92II	CATG	1 cut(s)	506
HspAI	GCGC	2 cut(s)	308, 310
Ksp22I	TGATCA	1 cut(s)	121
KspAI	GTTAAC	1 cut(s)	442
Kzo9I	GATC	2 cut(s)	121, 445
LguI	GCTCTTC	1 cut(s)	405
LmnI	GCTCC	1 cut(s)	77
Lsp1109I	GCAGC	1 cut(s)	562
LweI	GCATC	5 cut(s)	28, 238, 397, 413, 545
MaeI	CTAG	1 cut(s)	599
MaeII	ACGT	1 cut(s)	580
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	2 cut(s)	123, 447
MboI	GATC	2 cut(s)	121, 445
MboII	GAAGA	5 cut(s)	185, 392, 494, 695, 701
MluCI	AATT	3 cut(s)	473, 525, 686
MlyI	GAGTC	2 cut(s)	53, 372
MseI	TTAA	3 cut(s)	153, 267, 441
MspR9I	CCNGG	1 cut(s)	354
MvaI	CCWGG	1 cut(s)	354
MvnI	CGCG	1 cut(s)	310
MwoI	GCNNNNNNNGC	1 cut(s)	575
NdeII	GATC	2 cut(s)	121, 445
NlaIII	CATG	1 cut(s)	506
NlaIV	GGNNCC	1 cut(s)	198
NmuCI	GTSAC	1 cut(s)	226
NspI	RCATGY	1 cut(s)	506
PaeI	GCATGC	1 cut(s)	506
PauI	GCGCGC	1 cut(s)	308
PceI	AGGCCT	1 cut(s)	112
PciSI	GCTCTTC	1 cut(s)	405
PfeI	GAWTC	2 cut(s)	329, 542
PkrI	GCNGC	1 cut(s)	577
Ple19I	CGATCG	1 cut(s)	448
PleI	GAGTC	2 cut(s)	53, 372
PpsI	GAGTC	2 cut(s)	53, 372
Ppu21I	YACGTR	1 cut(s)	581
Psp6I	CCWGG	1 cut(s)	352
PspFI	CCCAGC	1 cut(s)	619
PspGI	CCWGG	1 cut(s)	352
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	281
PteI	GCGCGC	1 cut(s)	308
PvuI	CGATCG	1 cut(s)	448
RsaI	GTAC	2 cut(s)	367, 603
RsaNI	GTAC	2 cut(s)	366, 602
SapI	GCTCTTC	1 cut(s)	405
SaqAI	TTAA	3 cut(s)	153, 267, 441
SatI	GCNGC	1 cut(s)	576
Sau3AI	GATC	2 cut(s)	121, 445
Sau96I	GGNCC	1 cut(s)	281
ScaI	AGTACT	1 cut(s)	603
SchI	GAGTC	2 cut(s)	53, 372
ScrFI	CCNGG	1 cut(s)	354
SfaNI	GCATC	5 cut(s)	28, 238, 397, 413, 545
SfcI	CTRYAG	1 cut(s)	84
SinI	GGWCC	1 cut(s)	281
SphI	GCATGC	1 cut(s)	506
Sse9I	AATT	3 cut(s)	473, 525, 686
SseBI	AGGCCT	1 cut(s)	112
SsiI	CCGC	1 cut(s)	375
SspMI	CTAG	1 cut(s)	599
StuI	AGGCCT	1 cut(s)	112
StyD4I	CCNGG	1 cut(s)	352
TaaI	ACNGT	4 cut(s)	226, 232, 592, 700
TaiI	ACGT	1 cut(s)	583
TaqI	TCGA	6 cut(s)	7, 186, 246, 421, 448, 633
TasI	AATT	3 cut(s)	473, 525, 686
TatI	WGTACW	1 cut(s)	601
TfiI	GAWTC	2 cut(s)	329, 542
Tru1I	TTAA	3 cut(s)	153, 267, 441
Tru9I	TTAA	3 cut(s)	153, 267, 441
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	1 cut(s)	575
Tsp45I	GTSAC	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	281
XceI	RCATGY	1 cut(s)	506
XspI	CTAG	1 cut(s)	599
ZrmI	AGTACT	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.