Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004945

Physical Location & Seq

Genomic Coordinates Forward (+)

75349913 .. 75352442

Gene Structure 2530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0641400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTCTAGTGAAGAATGGTTTTTCCATCACAGGGTGGTGCAAACAAGCCTAAGGGAACCGTACCCCGGAGGAGGAAGCGGCGGCGAGGTCAAGATTCTGTTCAAATTGTTGTTCTACAGGGTAAACGCAAGCCAATCCCAGGGGGGTGATCCAGTTTATGACAGAAGTGAGTCAACCATCCCAGTATCTCAAGCAGAATTTTGGGTCAATTTTGGTGAGATCAAGTCGAATAATAGAGTCGAGGAGTATAGAGCGATGATGTCGGATTCTCTTTCAAACTTGGGTGTCCCGCAAGATGAGCATCCACATATTATTGAAAACATATTCCAGGTGGTTGACGCGGCCGTCTTCCCCGACTACCCTATTGTTGTTGGCGTATGGGACACCACTTTTCGCAGCAGGAGTAGTGATGAAGATGAAGTATGTAGACCTAATTTCGTTCCGGCAGCGGAATTGTCCATCCAGGGTTTGCAGCAAGTGACACTTGATGGCTCGGAATTTAAGGCACGTTTACTTACTTGGAATGGAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010287 GO:0016101 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0019432 GO:0033306 GO:0034308 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:1901576 GO:1901615 GO:1903173

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DAGAT Hydrolase_4

Protein Analysis

177

Amino Acids

19.99

Weight (kDa)

4.71

Isoelectric Point (pI)

57.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54570
fragaria_vesca	FvH4_6g03990 FvH4_6g04000
malus_domestica	MD04G1216900.v1.1 MD12G1233500.v1.1
prunus_persica	Prupe.6G336800_v2.0.a1 Prupe.6G336800_v2.0.a1 Prupe.6G336800_v2.0.a1 Prupe.6G336800_v2.0.a1
pyrus_communis	pycom04g19300 pycom12g21610
rosa_chinensis	RchiOBHm_Chr3g0452581
rosa_laevigata	RLG00000014771 RLG00000025582
rosa_multiflora	Rmu_co8485569.1_g000001 Rmu_sc0004414.1_g000004 Rmu_sc0028651.1_g000001 Rmu_sc0032164.1_g000001
rosa_roxburghii	Rroxscaffold_6G00429620 Rroxscaffold_7G00209280 Rroxscaffold_7G00209300
rosa_rugosa	Rorug02G0641400 Rorug02G0641500 Rorug02G0641500
rosa_samantha	Rh3AG044000 Rh3BG046100 Rh3CG044800 Rh3DG045100
rosa_wichuraiana	Rw3G003410 Rw6G007390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	344
AccI	GTMKAC	1 cut(s)	427
AccII	CGCG	1 cut(s)	341
AciI	CCGC	5 cut(s)	78, 81, 290, 341, 449
AclWI	GGATC	1 cut(s)	143
AcoI	YGGCCR	1 cut(s)	342
AcsI	RAATTY	2 cut(s)	197, 497
AdeI	CACNNNGTG	1 cut(s)	34
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	4 cut(s)	31, 65, 71, 139
AgsI	TTSAA	3 cut(s)	103, 276, 317
AjnI	CCWGG	3 cut(s)	138, 327, 462
AlwI	GGATC	1 cut(s)	143
AoxI	GGCC	1 cut(s)	342
ApeKI	GCWGC	3 cut(s)	396, 446, 472
ApoI	RAATTY	2 cut(s)	197, 497
AsuC2I	CCSGG	1 cut(s)	66
AsuHPI	GGTGA	2 cut(s)	158, 227
AxyI	CCTNAGG	1 cut(s)	50
BbsI	GAAGAC	1 cut(s)	340
BbvI	GCAGC	3 cut(s)	408, 458, 484
BccI	CCATC	4 cut(s)	33, 185, 467, 482
BceAI	ACGGC	1 cut(s)	329
BciT130I	CCWGG	3 cut(s)	140, 329, 464
BcnI	CCSGG	1 cut(s)	66
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	115
BisI	GCNGC	6 cut(s)	79, 82, 342, 397, 447, 473
BlsI	GCNGC	6 cut(s)	80, 83, 343, 398, 448, 474
Bme1390I	CCNGG	4 cut(s)	66, 140, 329, 464
BmiI	GGNNCC	1 cut(s)	57
BmrFI	CCNGG	4 cut(s)	66, 140, 329, 464
BmrI	ACTGGG	1 cut(s)	176
BmsI	GCATC	1 cut(s)	310
BmuI	ACTGGG	1 cut(s)	176
BpiI	GAAGAC	1 cut(s)	340
BpuEI	CTTGAG	1 cut(s)	174
BpuMI	CCSGG	1 cut(s)	66
BsaBI	GATNNNNATC	1 cut(s)	300
BsaJI	CCNNGG	4 cut(s)	64, 138, 139, 463
Bsc4I	CCNNNNNNNGG	4 cut(s)	31, 65, 71, 139
Bse1I	ACTGG	2 cut(s)	152, 182
Bse21I	CCTNAGG	1 cut(s)	50
Bse8I	GATNNNNATC	1 cut(s)	300
BseBI	CCWGG	3 cut(s)	140, 329, 464
BseDI	CCNNGG	4 cut(s)	64, 138, 139, 463
BseGI	GGATG	3 cut(s)	177, 301, 459
BseJI	GATNNNNATC	1 cut(s)	300
BseLI	CCNNNNNNNGG	4 cut(s)	31, 65, 71, 139
BseNI	ACTGG	2 cut(s)	152, 182
BseRI	GAGGAG	2 cut(s)	84, 257
BseX3I	CGGCCG	1 cut(s)	342
BseXI	GCAGC	3 cut(s)	408, 458, 484
Bsh1236I	CGCG	1 cut(s)	341
Bsh1285I	CGRYCG	1 cut(s)	345
BshFI	GGCC	1 cut(s)	344
BsiEI	CGRYCG	1 cut(s)	345
BsiSI	CCGG	2 cut(s)	66, 443
BslFI	GGGAC	2 cut(s)	272, 395
BslI	CCNNNNNNNGG	4 cut(s)	31, 65, 71, 139
BsmFI	GGGAC	2 cut(s)	272, 395
BsnI	GGCC	1 cut(s)	344
Bsp143I	GATC	2 cut(s)	148, 219
BspACI	CCGC	5 cut(s)	78, 81, 290, 341, 449
BspANI	GGCC	1 cut(s)	344
BspFNI	CGCG	1 cut(s)	341
BspLI	GGNNCC	1 cut(s)	57
BspPI	GGATC	1 cut(s)	143
BsrI	ACTGG	2 cut(s)	152, 182
BssECI	CCNNGG	4 cut(s)	64, 138, 139, 463
BssMI	GATC	2 cut(s)	148, 219
Bst2UI	CCWGG	3 cut(s)	140, 329, 464
Bst4CI	ACNGT	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	1 cut(s)	50
BstF5I	GGATG	3 cut(s)	177, 301, 459
BstFNI	CGCG	1 cut(s)	341
BstKTI	GATC	2 cut(s)	151, 222
BstMBI	GATC	2 cut(s)	148, 219
BstMCI	CGRYCG	1 cut(s)	345
BstMWI	GCNNNNNNNGC	1 cut(s)	298
BstNI	CCWGG	3 cut(s)	140, 329, 464
BstSCI	CCNGG	4 cut(s)	64, 138, 327, 462
BstSFI	CTRYAG	1 cut(s)	115
BstUI	CGCG	1 cut(s)	341
BstV1I	GCAGC	3 cut(s)	408, 458, 484
BstV2I	GAAGAC	1 cut(s)	340
BstZI	CGGCCG	1 cut(s)	342
Bsu36I	CCTNAGG	1 cut(s)	50
BsuRI	GGCC	1 cut(s)	344
BtgZI	GCGATG	1 cut(s)	269
BtsCI	GGATG	3 cut(s)	177, 301, 459
Cac8I	GCNNGC	1 cut(s)	130
CseI	GACGC	1 cut(s)	347
Csp6I	GTAC	1 cut(s)	61
CviJI	RGCY	4 cut(s)	48, 132, 344, 492
CviKI_1	RGCY	4 cut(s)	48, 132, 344, 492
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	2 cut(s)	150, 221
DpnII	GATC	2 cut(s)	148, 219
DraIII	CACNNNGTG	1 cut(s)	34
DrdI	GACNNNNNNGTC	1 cut(s)	344
DseDI	GACNNNNNNGTC	1 cut(s)	344
EaeI	YGGCCR	1 cut(s)	342
EagI	CGGCCG	1 cut(s)	342
EclXI	CGGCCG	1 cut(s)	342
Eco52I	CGGCCG	1 cut(s)	342
Eco81I	CCTNAGG	1 cut(s)	50
EcoRII	CCWGG	3 cut(s)	138, 327, 462
FaiI	YATR	6 cut(s)	159, 249, 309, 323, 379, 424
FalI	AAGNNNNNCTT	2 cut(s)	468, 500
FaqI	GGGAC	2 cut(s)	272, 395
FauI	CCCGC	1 cut(s)	297
FblI	GTMKAC	1 cut(s)	427
Fnu4HI	GCNGC	6 cut(s)	79, 82, 342, 397, 447, 473
FokI	GGATG	3 cut(s)	164, 288, 446
Fsp4HI	GCNGC	6 cut(s)	79, 82, 342, 397, 447, 473
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	6 cut(s)	79, 82, 342, 397, 447, 473
HaeIII	GGCC	1 cut(s)	344
HapII	CCGG	2 cut(s)	66, 443
HgaI	GACGC	1 cut(s)	347
HincII	GTYRAC	2 cut(s)	174, 337
HindII	GTYRAC	2 cut(s)	174, 337
HinfI	GANTC	4 cut(s)	94, 170, 237, 266
HpaII	CCGG	2 cut(s)	66, 443
HphI	GGTGA	2 cut(s)	158, 227
Hpy166II	GTNNAC	5 cut(s)	124, 174, 337, 428, 512
Hpy188I	TCNGA	2 cut(s)	265, 496
Hpy188III	TCNNGA	1 cut(s)	91
Hpy8I	GTNNAC	5 cut(s)	124, 174, 337, 428, 512
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4IV	ACGT	1 cut(s)	508
HpyCH4V	TGCA	2 cut(s)	40, 472
HpyF10VI	GCNNNNNNNGC	1 cut(s)	298
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	1 cut(s)	508
Kzo9I	GATC	2 cut(s)	148, 219
Lsp1109I	GCAGC	3 cut(s)	408, 458, 484
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	1 cut(s)	508
MaeIII	GTNAC	1 cut(s)	478
MalI	GATC	2 cut(s)	150, 221
MboI	GATC	2 cut(s)	148, 219
MboII	GAAGA	3 cut(s)	23, 340, 425
MluCI	AATT	6 cut(s)	104, 197, 208, 433, 452, 497
MlyI	GAGTC	2 cut(s)	179, 246
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	4 cut(s)	62, 65, 79, 235
MseI	TTAA	1 cut(s)	501
MspA1I	CMGCKG	1 cut(s)	449
MspI	CCGG	2 cut(s)	66, 443
MspR9I	CCNGG	4 cut(s)	66, 140, 329, 464
MvaI	CCWGG	3 cut(s)	140, 329, 464
MvnI	CGCG	1 cut(s)	341
MwoI	GCNNNNNNNGC	1 cut(s)	298
NciI	CCSGG	1 cut(s)	66
NdeII	GATC	2 cut(s)	148, 219
NlaIV	GGNNCC	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	478
PasI	CCCWGGG	1 cut(s)	139
PfeI	GAWTC	2 cut(s)	94, 266
PkrI	GCNGC	6 cut(s)	80, 83, 343, 398, 448, 474
PleI	GAGTC	2 cut(s)	178, 245
PpsI	GAGTC	2 cut(s)	178, 245
Psp6I	CCWGG	3 cut(s)	138, 327, 462
PspGI	CCWGG	3 cut(s)	138, 327, 462
PspN4I	GGNNCC	1 cut(s)	57
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	6 cut(s)	79, 82, 342, 397, 447, 473
Sau3AI	GATC	2 cut(s)	148, 219
SchI	GAGTC	2 cut(s)	179, 246
ScrFI	CCNGG	4 cut(s)	66, 140, 329, 464
SetI	ASST	4 cut(s)	90, 333, 433, 511
SfaNI	GCATC	1 cut(s)	310
SfcI	CTRYAG	1 cut(s)	115
SmlI	CTYRAG	1 cut(s)	189
SmoI	CTYRAG	1 cut(s)	189
Sse9I	AATT	6 cut(s)	104, 197, 208, 433, 452, 497
SsiI	CCGC	5 cut(s)	78, 81, 290, 341, 449
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	4 cut(s)	64, 138, 327, 462
TaaI	ACNGT	1 cut(s)	60
TaiI	ACGT	1 cut(s)	511
TaqI	TCGA	2 cut(s)	227, 240
TasI	AATT	6 cut(s)	104, 197, 208, 433, 452, 497
TauI	GCSGC	3 cut(s)	81, 84, 344
TfiI	GAWTC	2 cut(s)	94, 266
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	3 cut(s)	396, 446, 472
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	2 cut(s)	426, 432
XapI	RAATTY	2 cut(s)	197, 497
XmiI	GTMKAC	1 cut(s)	427
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.