Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028651.1

Orthogroup ID

OG0004945

Physical Location & Seq

Genomic Coordinates Reverse (-)

528 .. 1677

Gene Structure 1150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028651.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atggctgcacgttttggggccacaattgtaccatttgcagctgtaggagaagatgacttactcaaattggttcttgactacaatgacataaagaagatccctgtggtgggcgactatttcatcaatgctaataatgatgctataaaattgagggaggatacacctggagaagttgccaaccaagatctcttctttcccggaattctgcctaagttaccaggccgctattactatttgtttgggaaaccaatagaaacaaaaggaagggaagagatcctgaaagacaaagacagtgcaaacaaattgtatttggagatacaatctgaaattgaacgaagtttagcatacttaatcaagaagcgagaggaggatccttacaggaatcttattgacagaacagtatatcgggcactatattcccgtttagatgaaattccaacatttgagccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010287 GO:0016101 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0019432 GO:0033306 GO:0034308 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:1901576 GO:1901615 GO:1903173

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DAGAT Hydrolase_4

Protein Analysis

150

Amino Acids

17.29

Weight (kDa)

5.02

Isoelectric Point (pI)

43.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54570
fragaria_vesca	FvH4_6g03990 FvH4_6g04000
malus_domestica	MD04G1216900.v1.1 MD12G1233500.v1.1
prunus_persica	Prupe.6G336800_v2.0.a1 Prupe.6G336800_v2.0.a1 Prupe.6G336800_v2.0.a1 Prupe.6G336800_v2.0.a1
pyrus_communis	pycom04g19300 pycom12g21610
rosa_chinensis	RchiOBHm_Chr3g0452581
rosa_laevigata	RLG00000014771 RLG00000025582
rosa_multiflora	Rmu_co8485569.1_g000001 Rmu_sc0004414.1_g000004 Rmu_sc0028651.1_g000001 Rmu_sc0032164.1_g000001
rosa_roxburghii	Rroxscaffold_6G00429620 Rroxscaffold_7G00209280 Rroxscaffold_7G00209300
rosa_rugosa	Rorug02G0641400 Rorug02G0641500 Rorug02G0641500
rosa_samantha	Rh3AG044000 Rh3BG046100 Rh3CG044800 Rh3DG045100
rosa_wichuraiana	Rw3G003410 Rw6G007390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	223
AclWI	GGATC	4 cut(s)	91, 268, 365, 378
AcsI	RAATTY	2 cut(s)	201, 432
AfaI	GTAC	1 cut(s)	30
AfiI	CCNNNNNNNGG	2 cut(s)	106, 107
AgsI	TTSAA	1 cut(s)	332
AjnI	CCWGG	2 cut(s)	163, 217
AluBI	AGCT	1 cut(s)	41
AluI	AGCT	1 cut(s)	41
AlwI	GGATC	4 cut(s)	91, 268, 365, 378
AoxI	GGCC	2 cut(s)	18, 220
ApeKI	GCWGC	2 cut(s)	5, 38
ApoI	RAATTY	2 cut(s)	201, 432
AspS9I	GGNCC	1 cut(s)	18
AsuC2I	CCSGG	1 cut(s)	198
BaeGI	GKGCMC	1 cut(s)	412
BaeI	ACNNNNGTAYC	2 cut(s)	12, 45
BamHI	GGATCC	1 cut(s)	370
BarI	GAAGNNNNNNTAC	2 cut(s)	42, 74
BbvI	GCAGC	1 cut(s)	50
BciT130I	CCWGG	2 cut(s)	165, 219
BciVI	GTATCC	1 cut(s)	151
BcnI	CCSGG	1 cut(s)	198
BfmI	CTRYAG	1 cut(s)	42
BfuI	GTATCC	1 cut(s)	151
BglII	AGATCT	1 cut(s)	184
BisI	GCNGC	3 cut(s)	6, 39, 223
BlsI	GCNGC	3 cut(s)	7, 40, 224
Bme1390I	CCNGG	3 cut(s)	165, 198, 219
BmgT120I	GGNCC	1 cut(s)	18
BmiI	GGNNCC	2 cut(s)	19, 372
BmrFI	CCNGG	3 cut(s)	165, 198, 219
BmsI	GCATC	1 cut(s)	127
BpmI	CTGGAG	1 cut(s)	186
BpuMI	CCSGG	1 cut(s)	198
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 107
BseBI	CCWGG	2 cut(s)	165, 219
BseLI	CCNNNNNNNGG	2 cut(s)	106, 107
BseRI	GAGGAG	1 cut(s)	380
BseSI	GKGCMC	1 cut(s)	412
BseXI	GCAGC	1 cut(s)	50
BshFI	GGCC	2 cut(s)	20, 222
BsiSI	CCGG	1 cut(s)	198
BslI	CCNNNNNNNGG	2 cut(s)	106, 107
BsnI	GGCC	2 cut(s)	20, 222
Bsp1286I	GDGCHC	1 cut(s)	412
Bsp143I	GATC	4 cut(s)	96, 184, 273, 370
BspACI	CCGC	1 cut(s)	223
BspANI	GGCC	2 cut(s)	20, 222
BspLI	GGNNCC	2 cut(s)	19, 372
BspPI	GGATC	4 cut(s)	91, 268, 365, 378
BssMI	GATC	4 cut(s)	96, 184, 273, 370
Bst2UI	CCWGG	2 cut(s)	165, 219
Bst4CI	ACNGT	2 cut(s)	293, 400
Bst6I	CTCTTC	2 cut(s)	194, 264
BstDEI	CTNAG	1 cut(s)	210
BstKTI	GATC	4 cut(s)	99, 187, 276, 373
BstMBI	GATC	4 cut(s)	96, 184, 273, 370
BstNI	CCWGG	2 cut(s)	165, 219
BstSCI	CCNGG	3 cut(s)	163, 196, 217
BstSFI	CTRYAG	1 cut(s)	42
BstSLI	GKGCMC	1 cut(s)	412
BstV1I	GCAGC	1 cut(s)	50
BstX2I	RGATCY	4 cut(s)	96, 184, 273, 370
BstYI	RGATCY	4 cut(s)	96, 184, 273, 370
BsuI	GTATCC	1 cut(s)	151
BsuRI	GGCC	2 cut(s)	20, 222
BtsIMutI	CAGTG	1 cut(s)	298
Cfr13I	GGNCC	1 cut(s)	18
Csp6I	GTAC	1 cut(s)	29
CviJI	RGCY	5 cut(s)	5, 20, 41, 222, 448
CviKI_1	RGCY	5 cut(s)	5, 20, 41, 222, 448
CviQI	GTAC	1 cut(s)	29
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	4 cut(s)	98, 186, 275, 372
DpnII	GATC	4 cut(s)	96, 184, 273, 370
Eam1104I	CTCTTC	2 cut(s)	194, 264
EarI	CTCTTC	2 cut(s)	194, 264
EcoRI	GAATTC	1 cut(s)	201
EcoRII	CCWGG	2 cut(s)	163, 217
FaiI	YATR	5 cut(s)	89, 143, 346, 403, 415
Fnu4HI	GCNGC	3 cut(s)	6, 39, 223
Fsp4HI	GCNGC	3 cut(s)	6, 39, 223
GluI	GCNGC	3 cut(s)	6, 39, 223
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	2 cut(s)	20, 222
HapII	CCGG	1 cut(s)	198
HinfI	GANTC	1 cut(s)	382
HpaII	CCGG	1 cut(s)	198
Hpy188I	TCNGA	1 cut(s)	325
Hpy188III	TCNNGA	3 cut(s)	74, 277, 355
HpyAV	CCTTC	1 cut(s)	258
HpyCH4III	ACNGT	2 cut(s)	293, 400
HpyCH4IV	ACGT	1 cut(s)	10
HpyCH4V	TGCA	3 cut(s)	8, 38, 296
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	1 cut(s)	10
Kzo9I	GATC	4 cut(s)	96, 184, 273, 370
LpnPI	CCDG	8 cut(s)	114, 150, 177, 204, 211, 231, 290, 364
Lsp1109I	GCAGC	1 cut(s)	50
LweI	GCATC	1 cut(s)	127
MaeII	ACGT	1 cut(s)	10
MaeIII	GTNAC	1 cut(s)	213
MalI	GATC	4 cut(s)	98, 186, 275, 372
MboI	GATC	4 cut(s)	96, 184, 273, 370
MboII	GAAGA	4 cut(s)	62, 106, 181, 281
MfeI	CAATTG	1 cut(s)	24
MflI	RGATCY	4 cut(s)	96, 184, 273, 370
MhlI	GDGCHC	1 cut(s)	412
MluCI	AATT	7 cut(s)	24, 65, 146, 201, 302, 327, 432
MnlI	CCTC	4 cut(s)	144, 148, 358, 361
MseI	TTAA	1 cut(s)	350
MspA1I	CMGCKG	1 cut(s)	41
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	3 cut(s)	165, 198, 219
MunI	CAATTG	1 cut(s)	24
MvaI	CCWGG	2 cut(s)	165, 219
NciI	CCSGG	1 cut(s)	198
NdeII	GATC	4 cut(s)	96, 184, 273, 370
NlaIV	GGNNCC	2 cut(s)	19, 372
PfeI	GAWTC	1 cut(s)	382
PfoI	TCCNGGA	1 cut(s)	196
PkrI	GCNGC	3 cut(s)	7, 40, 224
Psp6I	CCWGG	2 cut(s)	163, 217
PspGI	CCWGG	2 cut(s)	163, 217
PspN4I	GGNNCC	2 cut(s)	19, 372
PspPI	GGNCC	1 cut(s)	18
PsuI	RGATCY	4 cut(s)	96, 184, 273, 370
PvuII	CAGCTG	1 cut(s)	41
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	3 cut(s)	6, 39, 223
Sau3AI	GATC	4 cut(s)	96, 184, 273, 370
Sau96I	GGNCC	1 cut(s)	18
ScrFI	CCNGG	3 cut(s)	165, 198, 219
SduI	GDGCHC	1 cut(s)	412
SetI	ASST	3 cut(s)	13, 43, 166
SfaNI	GCATC	1 cut(s)	127
SfcI	CTRYAG	1 cut(s)	42
Sse9I	AATT	7 cut(s)	24, 65, 146, 201, 302, 327, 432
SsiI	CCGC	1 cut(s)	223
StyD4I	CCNGG	3 cut(s)	163, 196, 217
TaaI	ACNGT	2 cut(s)	293, 400
TaiI	ACGT	1 cut(s)	13
TasI	AATT	7 cut(s)	24, 65, 146, 201, 302, 327, 432
TauI	GCSGC	1 cut(s)	225
TfiI	GAWTC	1 cut(s)	382
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TscAI	CASTG	1 cut(s)	298
TseI	GCWGC	2 cut(s)	5, 38
TspDTI	ATGAA	2 cut(s)	109, 444
TspRI	CASTG	1 cut(s)	298
XapI	RAATTY	2 cut(s)	201, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.