Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004414.1

Orthogroup ID

OG0004945

Physical Location & Seq

Genomic Coordinates Reverse (-)

9952 .. 11190

Gene Structure 1239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004414.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atggctgcacgttttggggtcacaattgtaccatttgcagctgtaggagaagatgacttactcgaatcggttctcgactacaatgacataaagaagatccctgtggtgcgcgattatctcgccgatgctaataatgatgctataaaattgagggaggatacaagtggagaagtcgccaaccaagacctcttctttccgggaattctgcccaagttaccaggccgctattaccaattgtttgggaaaccgatagaaacaaaagggagggaagagatcctggaagacaaagacagtgcaaacaaattatatttagagatacaatctgaaattgaacgaagttcagcatacttaatcaagaagcgagaggaggatccttacaagaatcttattgacagaacagtatattgggcactatacgcccgtttagatgaagttccaacatttgagcttgaaaatttggtttcgaggagcatcctctcattggttttcactgtacagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010287 GO:0016101 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0019432 GO:0033306 GO:0034308 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:1901576 GO:1901615 GO:1903173

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DAGAT Hydrolase_4

Protein Analysis

166

Amino Acids

19.02

Weight (kDa)

4.65

Isoelectric Point (pI)

48.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54570
fragaria_vesca	FvH4_6g03990 FvH4_6g04000
malus_domestica	MD04G1216900.v1.1 MD12G1233500.v1.1
prunus_persica	Prupe.6G336800_v2.0.a1 Prupe.6G336800_v2.0.a1 Prupe.6G336800_v2.0.a1 Prupe.6G336800_v2.0.a1
pyrus_communis	pycom04g19300 pycom12g21610
rosa_chinensis	RchiOBHm_Chr3g0452581
rosa_laevigata	RLG00000014771 RLG00000025582
rosa_multiflora	Rmu_co8485569.1_g000001 Rmu_sc0004414.1_g000004 Rmu_sc0028651.1_g000001 Rmu_sc0032164.1_g000001
rosa_roxburghii	Rroxscaffold_6G00429620 Rroxscaffold_7G00209280 Rroxscaffold_7G00209300
rosa_rugosa	Rorug02G0641400 Rorug02G0641500 Rorug02G0641500
rosa_samantha	Rh3AG044000 Rh3BG046100 Rh3CG044800 Rh3DG045100
rosa_wichuraiana	Rw3G003410 Rw6G007390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	111
AciI	CCGC	1 cut(s)	223
AclWI	GGATC	4 cut(s)	91, 268, 365, 378
AcsI	RAATTY	2 cut(s)	201, 454
AfaI	GTAC	2 cut(s)	30, 495
AfiI	CCNNNNNNNGG	1 cut(s)	481
AgsI	TTSAA	2 cut(s)	332, 452
AjnI	CCWGG	2 cut(s)	217, 276
AjuI	GAANNNNNNNTTGG	2 cut(s)	388, 420
AluBI	AGCT	2 cut(s)	41, 448
AluI	AGCT	2 cut(s)	41, 448
AlwI	GGATC	4 cut(s)	91, 268, 365, 378
AoxI	GGCC	1 cut(s)	220
ApeKI	GCWGC	2 cut(s)	5, 38
ApoI	RAATTY	2 cut(s)	201, 454
Asp700I	GAANNNNTTC	1 cut(s)	69
AspLEI	GCGC	1 cut(s)	111
AsuC2I	CCSGG	1 cut(s)	198
BaeGI	GKGCMC	1 cut(s)	412
BaeI	ACNNNNGTAYC	2 cut(s)	12, 45
BamHI	GGATCC	1 cut(s)	370
BarI	GAAGNNNNNNTAC	2 cut(s)	42, 74
BbsI	GAAGAC	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	50
BciT130I	CCWGG	2 cut(s)	219, 278
BciVI	GTATCC	1 cut(s)	151
BcnI	CCSGG	1 cut(s)	198
BfmI	CTRYAG	1 cut(s)	42
BfuI	GTATCC	1 cut(s)	151
BisI	GCNGC	3 cut(s)	6, 39, 223
BlsI	GCNGC	3 cut(s)	7, 40, 224
Bme1390I	CCNGG	3 cut(s)	198, 219, 278
BmiI	GGNNCC	1 cut(s)	372
BmrFI	CCNGG	3 cut(s)	198, 219, 278
BmsI	GCATC	3 cut(s)	115, 127, 480
BpiI	GAAGAC	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	198
Bsc4I	CCNNNNNNNGG	1 cut(s)	481
BseBI	CCWGG	2 cut(s)	219, 278
BseGI	GGATG	1 cut(s)	471
BseLI	CCNNNNNNNGG	1 cut(s)	481
BseRI	GAGGAG	2 cut(s)	380, 481
BseSI	GKGCMC	1 cut(s)	412
BseXI	GCAGC	1 cut(s)	50
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	481
BsnI	GGCC	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	412
Bsp1407I	TGTACA	1 cut(s)	493
Bsp143I	GATC	3 cut(s)	96, 273, 370
BspACI	CCGC	1 cut(s)	223
BspANI	GGCC	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	372
BspPI	GGATC	4 cut(s)	91, 268, 365, 378
BsrGI	TGTACA	1 cut(s)	493
BssMI	GATC	3 cut(s)	96, 273, 370
Bst2UI	CCWGG	2 cut(s)	219, 278
Bst4CI	ACNGT	4 cut(s)	293, 400, 493, 498
Bst6I	CTCTTC	2 cut(s)	194, 264
BstAUI	TGTACA	1 cut(s)	493
BstF5I	GGATG	1 cut(s)	471
BstFNI	CGCG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	3 cut(s)	99, 276, 373
BstMBI	GATC	3 cut(s)	96, 273, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstNI	CCWGG	2 cut(s)	219, 278
BstSCI	CCNGG	3 cut(s)	196, 217, 276
BstSFI	CTRYAG	1 cut(s)	42
BstSLI	GKGCMC	1 cut(s)	412
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	50
BstV2I	GAAGAC	1 cut(s)	288
BstX2I	RGATCY	3 cut(s)	96, 273, 370
BstXI	CCANNNNNNTGG	1 cut(s)	239
BstYI	RGATCY	3 cut(s)	96, 273, 370
BsuI	GTATCC	1 cut(s)	151
BsuRI	GGCC	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	471
BtsIMutI	CAGTG	2 cut(s)	298, 489
CfoI	GCGC	1 cut(s)	111
Csp6I	GTAC	2 cut(s)	29, 494
CviJI	RGCY	4 cut(s)	5, 41, 222, 448
CviKI_1	RGCY	4 cut(s)	5, 41, 222, 448
CviQI	GTAC	2 cut(s)	29, 494
DpnI	GATC	3 cut(s)	98, 275, 372
DpnII	GATC	3 cut(s)	96, 273, 370
Eam1104I	CTCTTC	2 cut(s)	194, 264
EarI	CTCTTC	2 cut(s)	194, 264
EcoRI	GAATTC	1 cut(s)	201
EcoRII	CCWGG	2 cut(s)	217, 276
FaiI	YATR	6 cut(s)	89, 143, 307, 346, 403, 415
Fnu4HI	GCNGC	3 cut(s)	6, 39, 223
FokI	GGATG	1 cut(s)	458
Fsp4HI	GCNGC	3 cut(s)	6, 39, 223
GlaI	GCGC	1 cut(s)	110
GluI	GCNGC	3 cut(s)	6, 39, 223
HaeIII	GGCC	1 cut(s)	222
HapII	CCGG	1 cut(s)	197
HhaI	GCGC	1 cut(s)	111
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HinfI	GANTC	2 cut(s)	65, 382
HpaII	CCGG	1 cut(s)	197
Hpy188I	TCNGA	1 cut(s)	325
Hpy188III	TCNNGA	2 cut(s)	74, 355
HpyCH4III	ACNGT	4 cut(s)	293, 400, 493, 498
HpyCH4IV	ACGT	1 cut(s)	10
HpyCH4V	TGCA	3 cut(s)	8, 38, 296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
HpySE526I	ACGT	1 cut(s)	10
HspAI	GCGC	1 cut(s)	109
Kzo9I	GATC	3 cut(s)	96, 273, 370
LmnI	GCTCC	1 cut(s)	468
LpnPI	CCDG	6 cut(s)	114, 204, 210, 231, 263, 290
Lsp1109I	GCAGC	1 cut(s)	50
LweI	GCATC	3 cut(s)	115, 127, 480
MaeII	ACGT	1 cut(s)	10
MaeIII	GTNAC	2 cut(s)	19, 213
MalI	GATC	3 cut(s)	98, 275, 372
MboI	GATC	3 cut(s)	96, 273, 370
MboII	GAAGA	5 cut(s)	62, 106, 181, 281, 293
MfeI	CAATTG	2 cut(s)	24, 233
MflI	RGATCY	3 cut(s)	96, 273, 370
MhlI	GDGCHC	1 cut(s)	412
MluCI	AATT	7 cut(s)	24, 146, 201, 233, 302, 327, 454
MmeI	TCCRAC	1 cut(s)	461
MnlI	CCTC	8 cut(s)	144, 148, 197, 258, 358, 361, 459, 485
MroXI	GAANNNNTTC	1 cut(s)	69
MseI	TTAA	1 cut(s)	350
MspA1I	CMGCKG	1 cut(s)	41
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	3 cut(s)	198, 219, 278
MunI	CAATTG	2 cut(s)	24, 233
MvaI	CCWGG	2 cut(s)	219, 278
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	416
NciI	CCSGG	1 cut(s)	198
NdeII	GATC	3 cut(s)	96, 273, 370
NlaIV	GGNNCC	1 cut(s)	372
NmuCI	GTSAC	1 cut(s)	19
PdmI	GAANNNNTTC	1 cut(s)	69
PfeI	GAWTC	2 cut(s)	65, 382
PfoI	TCCNGGA	2 cut(s)	196, 276
PkrI	GCNGC	3 cut(s)	7, 40, 224
Psp6I	CCWGG	2 cut(s)	217, 276
PspGI	CCWGG	2 cut(s)	217, 276
PspN4I	GGNNCC	1 cut(s)	372
PsuI	RGATCY	3 cut(s)	96, 273, 370
PvuII	CAGCTG	1 cut(s)	41
RsaI	GTAC	2 cut(s)	30, 495
RsaNI	GTAC	2 cut(s)	29, 494
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	3 cut(s)	6, 39, 223
Sau3AI	GATC	3 cut(s)	96, 273, 370
ScrFI	CCNGG	3 cut(s)	198, 219, 278
SduI	GDGCHC	1 cut(s)	412
SetI	ASST	4 cut(s)	13, 43, 189, 450
SfaNI	GCATC	3 cut(s)	115, 127, 480
SfcI	CTRYAG	1 cut(s)	42
Sse9I	AATT	7 cut(s)	24, 146, 201, 233, 302, 327, 454
SsiI	CCGC	1 cut(s)	223
StyD4I	CCNGG	3 cut(s)	196, 217, 276
TaaI	ACNGT	4 cut(s)	293, 400, 493, 498
TaiI	ACGT	1 cut(s)	13
TaqI	TCGA	3 cut(s)	63, 75, 464
TasI	AATT	7 cut(s)	24, 146, 201, 233, 302, 327, 454
TatI	WGTACW	1 cut(s)	493
TauI	GCSGC	1 cut(s)	225
TfiI	GAWTC	2 cut(s)	65, 382
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TscAI	CASTG	2 cut(s)	298, 496
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	2 cut(s)	5, 38
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	444
TspRI	CASTG	2 cut(s)	298, 496
XapI	RAATTY	2 cut(s)	201, 454
XmnI	GAANNNNTTC	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.