Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032164.1

Orthogroup ID

OG0004945

Physical Location & Seq

Genomic Coordinates Forward (+)

62 .. 1964

Gene Structure 1903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032164.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

atgttgcatctagtatctttagaatatttgggaccaaaggtgatactaaaacaactgaatggcagattgttacgctttgctgctggttctgctcttttctcaacattggaagatggaacggtagtgagaggtcttgcaggagttccaattgaaggacctgtcttaattgttggctatcataatttaatggggctagaactgtattctttagttgaagaatttttaagagaaaagaaaataatggttcgtggtttagcacatccagaactgttgttcgggaagagctcagctgatttggacgtgctcaaattatttggtgcattacctgttacggcaagaaatctatttaaagcgctgtcatcaaactcacatgttctcttgtatcctggtggtgcacgtgaagctctccattacaagggtgaagaatacaagttattctggcctgatcaacctgaatttgtcagaatggctgcacgttttggggccacaattgtaccatttgcagctgtaggagaagatgacttactcaaattggttcttgactacaatgacataaagaagatccctgtggtgggcgactatttcatcaatgctaataatgatgctataaaattgagggaggatacacctggagaagttgccaaccaagacctcttcttacccggaattctgcccaagttaccaggccgctattaccatttgtttgggaaaccgatagaaacaaaaggaagggaagagatcctgaaagacaaagacagtgcaaacaaattgtatttggagatacaatctgaaattgaacgaagtttagcatacttaaccaagaagcgagaggaggatccttacaggaatcttattgacagaacagtatatcggacactatattcccgtttagatgaaattccaacatttgagccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010287 GO:0016101 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0019432 GO:0033306 GO:0034308 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:1901576 GO:1901615 GO:1903173

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DAGAT Hydrolase_4

Protein Analysis

305

Amino Acids

34.44

Weight (kDa)

6.13

Isoelectric Point (pI)

36.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54570
fragaria_vesca	FvH4_6g03990 FvH4_6g04000
malus_domestica	MD04G1216900.v1.1 MD12G1233500.v1.1
prunus_persica	Prupe.6G336800_v2.0.a1 Prupe.6G336800_v2.0.a1 Prupe.6G336800_v2.0.a1 Prupe.6G336800_v2.0.a1
pyrus_communis	pycom04g19300 pycom12g21610
rosa_chinensis	RchiOBHm_Chr3g0452581
rosa_laevigata	RLG00000014771 RLG00000025582
rosa_multiflora	Rmu_co8485569.1_g000001 Rmu_sc0004414.1_g000004 Rmu_sc0028651.1_g000001 Rmu_sc0032164.1_g000001
rosa_roxburghii	Rroxscaffold_6G00429620 Rroxscaffold_7G00209280 Rroxscaffold_7G00209300
rosa_rugosa	Rorug02G0641400 Rorug02G0641500 Rorug02G0641500
rosa_samantha	Rh3AG044000 Rh3BG046100 Rh3CG044800 Rh3DG045100
rosa_wichuraiana	Rw3G003410 Rw6G007390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	688
AclWI	GGATC	4 cut(s)	556, 733, 830, 843
AcsI	RAATTY	4 cut(s)	218, 455, 666, 897
AcvI	CACGTG	1 cut(s)	398
AfaI	GTAC	1 cut(s)	495
AfeI	AGCGCT	1 cut(s)	354
AfiI	CCNNNNNNNGG	4 cut(s)	152, 415, 571, 572
AflIII	ACRYGT	1 cut(s)	370
AgsI	TTSAA	3 cut(s)	152, 215, 797
AjiI	CACGTC	1 cut(s)	301
AjnI	CCWGG	3 cut(s)	385, 628, 682
AluBI	AGCT	4 cut(s)	285, 290, 404, 506
AluI	AGCT	4 cut(s)	285, 290, 404, 506
Alw21I	GWGCWC	3 cut(s)	287, 306, 397
Alw44I	GTGCAC	1 cut(s)	393
AlwI	GGATC	4 cut(s)	556, 733, 830, 843
Aor51HI	AGCGCT	1 cut(s)	354
AoxI	GGCC	3 cut(s)	440, 483, 685
ApaLI	GTGCAC	1 cut(s)	393
ApeKI	GCWGC	3 cut(s)	80, 470, 503
ApoI	RAATTY	4 cut(s)	218, 455, 666, 897
AspLEI	GCGC	1 cut(s)	355
AspS9I	GGNCC	3 cut(s)	32, 155, 483
AsuC2I	CCSGG	1 cut(s)	663
AsuHPI	GGTGA	2 cut(s)	52, 431
AvaII	GGWCC	2 cut(s)	32, 155
BaeGI	GKGCMC	1 cut(s)	397
BaeI	ACNNNNGTAYC	2 cut(s)	477, 510
BamHI	GGATCC	1 cut(s)	835
BanII	GRGCYC	1 cut(s)	287
BarI	GAAGNNNNNNTAC	2 cut(s)	507, 539
BbrPI	CACGTG	1 cut(s)	398
Bbv12I	GWGCWC	3 cut(s)	287, 306, 397
BbvI	GCAGC	3 cut(s)	67, 457, 515
BccI	CCATC	1 cut(s)	107
BceAI	ACGGC	1 cut(s)	348
BciT130I	CCWGG	3 cut(s)	387, 630, 684
BciVI	GTATCC	2 cut(s)	393, 616
BclI	TGATCA	1 cut(s)	445
BcnI	CCSGG	1 cut(s)	663
BfaI	CTAG	2 cut(s)	11, 194
BfmI	CTRYAG	1 cut(s)	507
BfoI	RGCGCY	1 cut(s)	356
BfuI	GTATCC	2 cut(s)	393, 616
BisI	GCNGC	4 cut(s)	81, 471, 504, 688
BlpI	GCTNAGC	1 cut(s)	286
BlsI	GCNGC	4 cut(s)	82, 472, 505, 689
Bme1390I	CCNGG	4 cut(s)	387, 630, 663, 684
Bme18I	GGWCC	2 cut(s)	32, 155
BmgBI	CACGTC	1 cut(s)	301
BmgT120I	GGNCC	3 cut(s)	32, 155, 483
BmiI	GGNNCC	3 cut(s)	33, 484, 837
BmrFI	CCNGG	4 cut(s)	387, 630, 663, 684
BmsI	GCATC	2 cut(s)	16, 592
BpmI	CTGGAG	1 cut(s)	651
Bpu1102I	GCTNAGC	1 cut(s)	286
BpuMI	CCSGG	1 cut(s)	663
BsaAI	YACGTR	1 cut(s)	398
Bsc4I	CCNNNNNNNGG	4 cut(s)	152, 415, 571, 572
BseBI	CCWGG	3 cut(s)	387, 630, 684
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	4 cut(s)	152, 415, 571, 572
BseMII	CTCAG	1 cut(s)	300
BseRI	GAGGAG	1 cut(s)	845
BseSI	GKGCMC	1 cut(s)	397
BseXI	GCAGC	3 cut(s)	67, 457, 515
BsgI	GTGCAG	1 cut(s)	456
BshFI	GGCC	3 cut(s)	442, 485, 687
BsiHKAI	GWGCWC	3 cut(s)	287, 306, 397
BsiSI	CCGG	1 cut(s)	663
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	4 cut(s)	152, 415, 571, 572
BsmFI	GGGAC	1 cut(s)	45
BsnI	GGCC	3 cut(s)	442, 485, 687
Bsp1286I	GDGCHC	3 cut(s)	287, 306, 397
Bsp143I	GATC	4 cut(s)	445, 561, 738, 835
Bsp1720I	GCTNAGC	1 cut(s)	286
BspACI	CCGC	1 cut(s)	688
BspANI	GGCC	3 cut(s)	442, 485, 687
BspCNI	CTCAG	1 cut(s)	299
BspLI	GGNNCC	3 cut(s)	33, 484, 837
BspPI	GGATC	4 cut(s)	556, 733, 830, 843
BspQI	GCTCTTC	1 cut(s)	275
BssMI	GATC	4 cut(s)	445, 561, 738, 835
Bst2UI	CCWGG	3 cut(s)	387, 630, 684
Bst4CI	ACNGT	5 cut(s)	121, 201, 270, 758, 865
Bst6I	CTCTTC	3 cut(s)	275, 659, 729
BstBAI	YACGTR	1 cut(s)	398
BstDEI	CTNAG	1 cut(s)	286
BstF5I	GGATG	1 cut(s)	259
BstH2I	RGCGCY	1 cut(s)	356
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	4 cut(s)	448, 564, 741, 838
BstMBI	GATC	4 cut(s)	445, 561, 738, 835
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 401
BstNI	CCWGG	3 cut(s)	387, 630, 684
BstNSI	RCATGY	1 cut(s)	374
BstSCI	CCNGG	4 cut(s)	385, 628, 661, 682
BstSFI	CTRYAG	1 cut(s)	507
BstSLI	GKGCMC	1 cut(s)	397
BstV1I	GCAGC	3 cut(s)	67, 457, 515
BstX2I	RGATCY	3 cut(s)	561, 738, 835
BstXI	CCANNNNNNTGG	1 cut(s)	704
BstYI	RGATCY	3 cut(s)	561, 738, 835
BsuI	GTATCC	2 cut(s)	393, 616
BsuRI	GGCC	3 cut(s)	442, 485, 687
BtrI	CACGTC	1 cut(s)	301
BtsCI	GGATG	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	763
CfoI	GCGC	1 cut(s)	355
Cfr13I	GGNCC	3 cut(s)	32, 155, 483
Csp6I	GTAC	1 cut(s)	494
CviAII	CATG	2 cut(s)	371, 915
CviQI	GTAC	1 cut(s)	494
DdeI	CTNAG	1 cut(s)	286
DpnI	GATC	4 cut(s)	447, 563, 740, 837
DpnII	GATC	4 cut(s)	445, 561, 738, 835
DraI	TTTAAA	1 cut(s)	349
Eam1104I	CTCTTC	3 cut(s)	275, 659, 729
EarI	CTCTTC	3 cut(s)	275, 659, 729
Ecl136II	GAGCTC	1 cut(s)	285
Eco24I	GRGCYC	1 cut(s)	287
Eco47I	GGWCC	2 cut(s)	32, 155
Eco47III	AGCGCT	1 cut(s)	354
Eco53kI	GAGCTC	1 cut(s)	285
Eco72I	CACGTG	1 cut(s)	398
EcoICRI	GAGCTC	1 cut(s)	285
EcoO109I	RGGNCCY	1 cut(s)	155
EcoRI	GAATTC	1 cut(s)	666
EcoRII	CCWGG	3 cut(s)	385, 628, 682
EcoT38I	GRGCYC	1 cut(s)	287
FaeI	CATG	2 cut(s)	374, 918
FaiI	YATR	8 cut(s)	180, 372, 554, 608, 811, 868, 880, 916
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	2 cut(s)	370, 914
FbaI	TGATCA	1 cut(s)	445
Fnu4HI	GCNGC	4 cut(s)	81, 471, 504, 688
FokI	GGATG	1 cut(s)	246
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	4 cut(s)	81, 471, 504, 688
FspBI	CTAG	2 cut(s)	11, 194
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	4 cut(s)	81, 471, 504, 688
GsuI	CTGGAG	1 cut(s)	651
HaeII	RGCGCY	1 cut(s)	356
HaeIII	GGCC	3 cut(s)	442, 485, 687
HapII	CCGG	1 cut(s)	663
HhaI	GCGC	1 cut(s)	355
Hin1II	CATG	2 cut(s)	374, 918
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HinfI	GANTC	1 cut(s)	847
HpaII	CCGG	1 cut(s)	663
HphI	GGTGA	2 cut(s)	52, 431
Hpy166II	GTNNAC	1 cut(s)	395
Hpy188I	TCNGA	3 cut(s)	464, 790, 873
Hpy188III	TCNNGA	4 cut(s)	263, 277, 539, 742
Hpy8I	GTNNAC	1 cut(s)	395
HpyAV	CCTTC	2 cut(s)	146, 723
HpyCH4III	ACNGT	5 cut(s)	121, 201, 270, 758, 865
HpyCH4IV	ACGT	3 cut(s)	300, 397, 475
HpyCH4V	TGCA	7 cut(s)	7, 137, 320, 395, 473, 503, 761
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 401
HpyF3I	CTNAG	1 cut(s)	286
HpySE526I	ACGT	3 cut(s)	300, 397, 475
Hsp92II	CATG	2 cut(s)	374, 918
HspAI	GCGC	1 cut(s)	353
Ksp22I	TGATCA	1 cut(s)	445
Kzo9I	GATC	4 cut(s)	445, 561, 738, 835
LguI	GCTCTTC	1 cut(s)	275
Lsp1109I	GCAGC	3 cut(s)	67, 457, 515
LweI	GCATC	2 cut(s)	16, 592
MaeI	CTAG	2 cut(s)	11, 194
MaeII	ACGT	3 cut(s)	300, 397, 475
MaeIII	GTNAC	3 cut(s)	69, 328, 678
MalI	GATC	4 cut(s)	447, 563, 740, 837
MboI	GATC	4 cut(s)	445, 561, 738, 835
MboII	GAAGA	8 cut(s)	122, 227, 292, 434, 527, 571, 646, 746
MfeI	CAATTG	2 cut(s)	147, 489
MflI	RGATCY	3 cut(s)	561, 738, 835
MhlI	GDGCHC	3 cut(s)	287, 306, 397
MnlI	CCTC	6 cut(s)	122, 609, 613, 662, 823, 826
MseI	TTAA	5 cut(s)	164, 185, 224, 348, 815
MspA1I	CMGCKG	2 cut(s)	290, 506
MspI	CCGG	1 cut(s)	663
MspR9I	CCNGG	4 cut(s)	387, 630, 663, 684
MunI	CAATTG	2 cut(s)	147, 489
MvaI	CCWGG	3 cut(s)	387, 630, 684
MwoI	GCNNNNNNNGC	2 cut(s)	89, 401
NciI	CCSGG	1 cut(s)	663
NdeII	GATC	4 cut(s)	445, 561, 738, 835
NlaIII	CATG	2 cut(s)	374, 918
NlaIV	GGNNCC	3 cut(s)	33, 484, 837
NspI	RCATGY	1 cut(s)	374
PciI	ACATGT	1 cut(s)	370
PciSI	GCTCTTC	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	847
PkrI	GCNGC	4 cut(s)	82, 472, 505, 689
PmaCI	CACGTG	1 cut(s)	398
PmlI	CACGTG	1 cut(s)	398
Ppu21I	YACGTR	1 cut(s)	398
PpuMI	RGGWCCY	1 cut(s)	155
PscI	ACATGT	1 cut(s)	370
Psp124BI	GAGCTC	1 cut(s)	287
Psp5II	RGGWCCY	1 cut(s)	155
Psp6I	CCWGG	3 cut(s)	385, 628, 682
PspCI	CACGTG	1 cut(s)	398
PspGI	CCWGG	3 cut(s)	385, 628, 682
PspN4I	GGNNCC	3 cut(s)	33, 484, 837
PspPI	GGNCC	3 cut(s)	32, 155, 483
PspPPI	RGGWCCY	1 cut(s)	155
PsuI	RGATCY	3 cut(s)	561, 738, 835
PvuII	CAGCTG	2 cut(s)	290, 506
RsaI	GTAC	1 cut(s)	495
RsaNI	GTAC	1 cut(s)	494
SacI	GAGCTC	1 cut(s)	287
SapI	GCTCTTC	1 cut(s)	275
SaqAI	TTAA	5 cut(s)	164, 185, 224, 348, 815
SatI	GCNGC	4 cut(s)	81, 471, 504, 688
Sau3AI	GATC	4 cut(s)	445, 561, 738, 835
Sau96I	GGNCC	3 cut(s)	32, 155, 483
ScrFI	CCNGG	4 cut(s)	387, 630, 663, 684
SduI	GDGCHC	3 cut(s)	287, 306, 397
SfaNI	GCATC	2 cut(s)	16, 592
SfcI	CTRYAG	1 cut(s)	507
SinI	GGWCC	2 cut(s)	32, 155
SsiI	CCGC	1 cut(s)	688
SspI	AATATT	1 cut(s)	26
SspMI	CTAG	2 cut(s)	11, 194
SstI	GAGCTC	1 cut(s)	287
StyD4I	CCNGG	4 cut(s)	385, 628, 661, 682
TaaI	ACNGT	5 cut(s)	121, 201, 270, 758, 865
TaiI	ACGT	3 cut(s)	303, 400, 478
TauI	GCSGC	1 cut(s)	690
TfiI	GAWTC	1 cut(s)	847
Tru1I	TTAA	5 cut(s)	164, 185, 224, 348, 815
Tru9I	TTAA	5 cut(s)	164, 185, 224, 348, 815
TscAI	CASTG	1 cut(s)	763
TseI	GCWGC	3 cut(s)	80, 470, 503
TspDTI	ATGAA	2 cut(s)	574, 909
TspRI	CASTG	1 cut(s)	763
VneI	GTGCAC	1 cut(s)	393
VpaK11BI	GGWCC	2 cut(s)	32, 155
XapI	RAATTY	4 cut(s)	218, 455, 666, 897
XceI	RCATGY	1 cut(s)	374
XspI	CTAG	2 cut(s)	11, 194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.