RLG00000018061

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0006389
Physical Location & Seq
Forward (+)
24983274 .. 24984195
922 bp
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UTR
Exon/CDS
Intron
RLM00000018061

Sequence Viewer

Length: 456 bp
ATGTCCCAAATTGAGATTGGAGAGGGCAACAAAGGGATCCTCGCTGCTGGAATGAATTTCATTAAATTCGTGGGTTTTATGACTTTATTTCAAAGATTGTCGAGTGACTACAGTCTAATGGAAGCTAGTGGTGGTATGCAAGAAAGTGCTAGAGGTTGGGCAAAAGGGTGTCATGGCCAGAATCAGGTTTCTTGTCCTTCATTAGCAGGGCGTAATCCCTCCATTTTCAAGGTTAGCCAGTGCTGGCATGTATCTAGGAACGGAAGTGAATGTAATGATAAGCAGGTCAATCGTCTCCTGATACTGAAATCATTGAAGTTTGCTCAGTATCACAGCAGAAGCCCTCTTATATGTGAAGATTTAAAGATGGTTTTAGGTGAGGACAAGAGGAGAACGGTTCAAATGCCAAGCTTTTGGAAGCAAAAGCGCCCTCTTTTTAAACAGAGATTTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.08

Weight (kDa)

9.82

Isoelectric Point (pI)

61.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 274
AclWI GGATC 2 cut(s) 31, 44
AcoI YGGCCR 1 cut(s) 175
AcsI RAATTY 2 cut(s) 55, 65
AfiI CCNNNNNNNGG 1 cut(s) 184
AgsI TTSAA 4 cut(s) 92, 229, 316, 401
AluBI AGCT 2 cut(s) 125, 411
AluI AGCT 2 cut(s) 125, 411
Alw26I GTCTC 1 cut(s) 299
AlwI GGATC 2 cut(s) 31, 44
AoxI GGCC 1 cut(s) 175
ApeKI GCWGC 1 cut(s) 44
ApoI RAATTY 2 cut(s) 55, 65
AspLEI GCGC 1 cut(s) 429
AsuHPI GGTGA 1 cut(s) 389
BalI TGGCCA 1 cut(s) 177
BamHI GGATCC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 31
BccI CCATC 1 cut(s) 361
BcgI CGANNNNNNTGC 2 cut(s) 272, 306
BcoDI GTCTC 1 cut(s) 299
BfaI CTAG 3 cut(s) 126, 150, 255
BfmI CTRYAG 1 cut(s) 109
BfoI RGCGCY 1 cut(s) 430
BfuAI ACCTGC 1 cut(s) 274
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 38
BoxI GACNNNNGTC 1 cut(s) 111
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse1I ACTGG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 184
BseMII CTCAG 1 cut(s) 338
BseNI ACTGG 1 cut(s) 238
BseRI GAGGAG 1 cut(s) 403
BseXI GCAGC 1 cut(s) 31
BshFI GGCC 1 cut(s) 177
BslI CCNNNNNNNGG 1 cut(s) 184
BsmAI GTCTC 1 cut(s) 299
BsmBI CGTCTC 1 cut(s) 299
BsnI GGCC 1 cut(s) 177
Bsp143I GATC 1 cut(s) 36
BspANI GGCC 1 cut(s) 177
BspCNI CTCAG 1 cut(s) 337
BspLI GGNNCC 1 cut(s) 38
BspMI ACCTGC 1 cut(s) 274
BspPI GGATC 2 cut(s) 31, 44
BsrI ACTGG 1 cut(s) 238
BssMI GATC 1 cut(s) 36
Bst4CI ACNGT 2 cut(s) 113, 397
BstC8I GCNNGC 1 cut(s) 245
BstDEI CTNAG 1 cut(s) 324
BstH2I RGCGCY 1 cut(s) 430
BstHHI GCGC 1 cut(s) 429
BstKTI GATC 1 cut(s) 39
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 1 cut(s) 36
BstNSI RCATGY 1 cut(s) 251
BstPAI GACNNNNGTC 1 cut(s) 111
BstSFI CTRYAG 1 cut(s) 109
BstV1I GCAGC 1 cut(s) 31
BstX2I RGATCY 1 cut(s) 36
BstXI CCANNNNNNTGG 1 cut(s) 414
BstYI RGATCY 1 cut(s) 36
BsuRI GGCC 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 245
BveI ACCTGC 1 cut(s) 274
Cac8I GCNNGC 1 cut(s) 245
CfoI GCGC 1 cut(s) 429
CviAII CATG 2 cut(s) 173, 248
CviJI RGCY 5 cut(s) 125, 177, 237, 342, 411
CviKI_1 RGCY 5 cut(s) 125, 177, 237, 342, 411
DdeI CTNAG 1 cut(s) 324
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
DraI TTTAAA 2 cut(s) 363, 439
EaeI YGGCCR 1 cut(s) 175
Esp3I CGTCTC 1 cut(s) 299
FaeI CATG 2 cut(s) 176, 251
FaiI YATR 6 cut(s) 80, 137, 174, 249, 350, 352
FatI CATG 2 cut(s) 172, 247
Fnu4HI GCNGC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 45
FspBI CTAG 3 cut(s) 126, 150, 255
GlaI GCGC 1 cut(s) 428
GluI GCNGC 1 cut(s) 45
HaeII RGCGCY 1 cut(s) 430
HaeIII GGCC 1 cut(s) 177
HhaI GCGC 1 cut(s) 429
Hin1II CATG 2 cut(s) 176, 251
Hin6I GCGC 1 cut(s) 427
HinP1I GCGC 1 cut(s) 427
HindIII AAGCTT 1 cut(s) 409
HinfI GANTC 1 cut(s) 181
HphI GGTGA 1 cut(s) 389
Hpy188III TCNNGA 1 cut(s) 298
HpyAV CCTTC 1 cut(s) 207
HpyCH4III ACNGT 2 cut(s) 113, 397
HpyCH4V TGCA 1 cut(s) 139
HpyF3I CTNAG 1 cut(s) 324
Hsp92II CATG 2 cut(s) 176, 251
HspAI GCGC 1 cut(s) 427
Kzo9I GATC 1 cut(s) 36
LpnPI CCDG 8 cut(s) 33, 170, 191, 192, 229, 251, 269, 311
Lsp1109I GCAGC 1 cut(s) 31
MaeI CTAG 3 cut(s) 126, 150, 255
MaeIII GTNAC 1 cut(s) 104
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 1 cut(s) 368
MflI RGATCY 1 cut(s) 36
MlsI TGGCCA 1 cut(s) 177
MluCI AATT 3 cut(s) 9, 55, 65
MluNI TGGCCA 1 cut(s) 177
MnlI CCTC 8 cut(s) 16, 50, 146, 229, 354, 373, 381, 441
Mox20I TGGCCA 1 cut(s) 177
MscI TGGCCA 1 cut(s) 177
MseI TTAA 3 cut(s) 63, 362, 438
Msp20I TGGCCA 1 cut(s) 177
NdeII GATC 1 cut(s) 36
NlaIII CATG 2 cut(s) 176, 251
NlaIV GGNNCC 1 cut(s) 38
NmuCI GTSAC 1 cut(s) 104
NspI RCATGY 1 cut(s) 251
PfeI GAWTC 1 cut(s) 181
PkrI GCNGC 1 cut(s) 46
PshAI GACNNNNGTC 1 cut(s) 111
PspN4I GGNNCC 1 cut(s) 38
PsuI RGATCY 1 cut(s) 36
SaqAI TTAA 3 cut(s) 63, 362, 438
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 1 cut(s) 36
SetI ASST 7 cut(s) 127, 157, 189, 234, 288, 379, 413
SfcI CTRYAG 1 cut(s) 109
Sse9I AATT 3 cut(s) 9, 55, 65
SspMI CTAG 3 cut(s) 126, 150, 255
TaaI ACNGT 2 cut(s) 113, 397
TaqI TCGA 1 cut(s) 101
TasI AATT 3 cut(s) 9, 55, 65
TfiI GAWTC 1 cut(s) 181
Tru1I TTAA 3 cut(s) 63, 362, 438
Tru9I TTAA 3 cut(s) 63, 362, 438
TscAI CASTG 1 cut(s) 245
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 1 cut(s) 44
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 3 cut(s) 49, 68, 189
TspGWI ACGGA 1 cut(s) 276
TspRI CASTG 1 cut(s) 245
XapI RAATTY 2 cut(s) 55, 65
XceI RCATGY 1 cut(s) 251
XcmI CCANNNNNNNNNTGG 1 cut(s) 14
XspI CTAG 3 cut(s) 126, 150, 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.