Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0006389

Physical Location & Seq

Genomic Coordinates Reverse (-)

1984957 .. 1985615

Gene Structure 659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG030800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGATTCGAAATTCCATCCGTAGTGGTGTGCAAGAAAGTGCTAGAGGTTGGGCAAATGGGAGTCATGGTGAGGATCAGGGTTCTTGTCATTCATTGGGAGGGCATAGTTCCTCCATTCTCAGGGTTGGCCGATGCCGACATGTGTCTAGGAGCGGAAGTGCATGTAATGATAATGCAGGTCAATCGTCTCCAGATACTGAAATCATTGAAGTTTGCCCAGTATCGGAGCAGCAATCAGAGCAGAAGCTGTCTTCTATGTCCAAGCTTTGGAGATCATGCCCAACTAATGGTGAAGTTTTTAAGATAATTTTGGATGAAGACAAGAGCAGGCTCTCAAATGGGGTTACATCATGTTTGCAAAGAAATGCTGATAGTAGACTGACTGAACATGAGACCAGACACCGGGATTCAAATGAACATTTGTTCCCACCGGACATAGCGAATCCACACATCTCTCGAGGGATGAAAGGACGCATTGAATGGCCCCGAGCCATCCAAAAGAAAGGTTCAAATGCCAAGCTTTTGCAAGCAAAAATAGAAAGCCAGAGATCTCAACTGCGCCATGTTTTTAAACAGAGGTTTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

195

Amino Acids

21.81

Weight (kDa)

9.64

Isoelectric Point (pI)

75.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006389)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02210
malus_domestica	MD05G1345300.v1.1
prunus_persica	Prupe.4G021500_v2.0.a1
pyrus_communis	pycom05g31420
rosa_chinensis	RchiOBHm_Chr5g0003281
rosa_laevigata	RLG00000018061 RLG00000031103 RLG00000031104 RLG00000031121
rosa_multiflora	Rmu_co8274905.1_g000001 Rmu_sc0002494.1_g000002 Rmu_sc0002494.1_g000004 Rmu_sc0010917.1_g000009 Rmu_sc0010917.1_g000010
rosa_roxburghii	Rroxscaffold_1G00072680
rosa_rugosa	Rorug04G0401900 Rorug04G0402400
rosa_samantha	Rh5AG028400 Rh5AG028500 Rh5BG028600 Rh5CG030800 Rh5CG030900 Rh5DG027600 Rh5DG029000 Rh5DG029100
rosa_wichuraiana	Rw5G002650 Rw5G002700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	167
AccB7I	CCANNNNNTGG	2 cut(s)	267, 287
AccBSI	CCGCTC	1 cut(s)	153
AccI	GTMKAC	1 cut(s)	376
AciI	CCGC	1 cut(s)	153
AclWI	GGATC	1 cut(s)	81
AcoI	YGGCCR	1 cut(s)	127
AcsI	RAATTY	1 cut(s)	10
AfiI	CCNNNNNNNGG	5 cut(s)	120, 223, 267, 287, 402
AflIII	ACRYGT	1 cut(s)	139
AgsI	TTSAA	4 cut(s)	209, 411, 479, 510
AloI	GAACNNNNNNTCC	2 cut(s)	408, 440
AluBI	AGCT	3 cut(s)	247, 265, 520
AluI	AGCT	3 cut(s)	247, 265, 520
Alw26I	GTCTC	2 cut(s)	192, 386
AlwI	GGATC	1 cut(s)	81
AlwNI	CAGNNNCTG	2 cut(s)	197, 247
Ama87I	CYCGRG	2 cut(s)	456, 486
AoxI	GGCC	2 cut(s)	127, 482
ApeKI	GCWGC	1 cut(s)	229
ApoI	RAATTY	1 cut(s)	10
AspLEI	GCGC	1 cut(s)	561
AspS9I	GGNCC	1 cut(s)	483
AsuC2I	CCSGG	1 cut(s)	404
AsuHPI	GGTGA	2 cut(s)	80, 302
AsuII	TTCGAA	1 cut(s)	7
AvaI	CYCGRG	2 cut(s)	456, 486
BbsI	GAAGAC	2 cut(s)	243, 324
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	2 cut(s)	23, 500
BcgI	CGANNNNNNTGC	2 cut(s)	165, 199
BcnI	CCSGG	1 cut(s)	404
BcoDI	GTCTC	2 cut(s)	192, 386
BfaI	CTAG	2 cut(s)	42, 147
BfuAI	ACCTGC	1 cut(s)	167
BglII	AGATCT	1 cut(s)	548
BisI	GCNGC	1 cut(s)	230
BlsI	GCNGC	1 cut(s)	231
Bme1390I	CCNGG	1 cut(s)	404
BmeT110I	CYCGRG	2 cut(s)	456, 486
BmgT120I	GGNCC	1 cut(s)	483
BmiI	GGNNCC	1 cut(s)	485
BmrFI	CCNGG	1 cut(s)	404
BmrI	ACTGGG	1 cut(s)	212
BmsI	GCATC	1 cut(s)	122
BmuI	ACTGGG	1 cut(s)	212
BoxI	GACNNNNGTC	1 cut(s)	142
BpiI	GAAGAC	2 cut(s)	243, 324
BpmI	CTGGAG	1 cut(s)	174
Bpu14I	TTCGAA	1 cut(s)	7
BpuMI	CCSGG	1 cut(s)	404
BsaI	GGTCTC	1 cut(s)	386
BsaWI	WCCGGW	1 cut(s)	430
BsaXI	ACNNNNNCTCC	4 cut(s)	52, 82, 142, 172
Bsc4I	CCNNNNNNNGG	5 cut(s)	120, 223, 267, 287, 402
Bse1I	ACTGG	1 cut(s)	218
BseGI	GGATG	4 cut(s)	15, 319, 468, 492
BseLI	CCNNNNNNNGG	5 cut(s)	120, 223, 267, 287, 402
BseMII	CTCAG	1 cut(s)	133
BseNI	ACTGG	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	241
BshFI	GGCC	2 cut(s)	129, 484
BsiHKCI	CYCGRG	2 cut(s)	456, 486
BsiSI	CCGG	2 cut(s)	403, 431
BslI	CCNNNNNNNGG	5 cut(s)	120, 223, 267, 287, 402
BsmAI	GTCTC	2 cut(s)	192, 386
BsmBI	CGTCTC	1 cut(s)	192
BsnI	GGCC	2 cut(s)	129, 484
Bso31I	GGTCTC	1 cut(s)	386
BsoBI	CYCGRG	2 cut(s)	456, 486
Bsp119I	TTCGAA	1 cut(s)	7
Bsp143I	GATC	3 cut(s)	73, 272, 548
BspACI	CCGC	1 cut(s)	153
BspANI	GGCC	2 cut(s)	129, 484
BspCNI	CTCAG	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	485
BspMI	ACCTGC	1 cut(s)	167
BspPI	GGATC	1 cut(s)	81
BspT104I	TTCGAA	1 cut(s)	7
BspTNI	GGTCTC	1 cut(s)	386
BsrBI	CCGCTC	1 cut(s)	153
BsrI	ACTGG	1 cut(s)	218
BssMI	GATC	3 cut(s)	73, 272, 548
BstBI	TTCGAA	1 cut(s)	7
BstC8I	GCNNGC	2 cut(s)	329, 528
BstDEI	CTNAG	1 cut(s)	119
BstF5I	GGATG	4 cut(s)	15, 319, 468, 492
BstHHI	GCGC	1 cut(s)	561
BstKTI	GATC	3 cut(s)	76, 275, 551
BstMAI	GTCTC	2 cut(s)	192, 386
BstMBI	GATC	3 cut(s)	73, 272, 548
BstMWI	GCNNNNNNNGC	1 cut(s)	238
BstNSI	RCATGY	2 cut(s)	143, 165
BstPAI	GACNNNNGTC	1 cut(s)	142
BstSCI	CCNGG	1 cut(s)	402
BstV1I	GCAGC	1 cut(s)	241
BstV2I	GAAGAC	2 cut(s)	243, 324
BstX2I	RGATCY	1 cut(s)	548
BstYI	RGATCY	1 cut(s)	548
BsuRI	GGCC	2 cut(s)	129, 484
BtsCI	GGATG	4 cut(s)	15, 319, 468, 492
BveI	ACCTGC	1 cut(s)	167
Cac8I	GCNNGC	2 cut(s)	329, 528
CaiI	CAGNNNCTG	2 cut(s)	197, 247
CfoI	GCGC	1 cut(s)	561
Cfr13I	GGNCC	1 cut(s)	483
CseI	GACGC	1 cut(s)	480
CviAII	CATG	7 cut(s)	65, 140, 162, 276, 351, 389, 563
CviJI	RGCY	8 cut(s)	129, 247, 265, 331, 484, 491, 520, 543
CviKI_1	RGCY	8 cut(s)	129, 247, 265, 331, 484, 491, 520, 543
DdeI	CTNAG	1 cut(s)	119
DpnI	GATC	3 cut(s)	75, 274, 550
DpnII	GATC	3 cut(s)	73, 272, 548
DraI	TTTAAA	1 cut(s)	571
EaeI	YGGCCR	1 cut(s)	127
Eco31I	GGTCTC	1 cut(s)	386
Eco88I	CYCGRG	2 cut(s)	456, 486
Esp3I	CGTCTC	1 cut(s)	192
FaeI	CATG	7 cut(s)	68, 143, 165, 279, 354, 392, 566
FatI	CATG	7 cut(s)	64, 139, 161, 275, 350, 388, 562
FblI	GTMKAC	1 cut(s)	376
Fnu4HI	GCNGC	1 cut(s)	230
FokI	GGATG	4 cut(s)	2, 326, 475, 479
Fsp4HI	GCNGC	1 cut(s)	230
FspBI	CTAG	2 cut(s)	42, 147
GlaI	GCGC	1 cut(s)	560
GluI	GCNGC	1 cut(s)	230
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	2 cut(s)	129, 484
HapII	CCGG	2 cut(s)	403, 431
HgaI	GACGC	1 cut(s)	480
HhaI	GCGC	1 cut(s)	561
Hin1II	CATG	7 cut(s)	68, 143, 165, 279, 354, 392, 566
Hin6I	GCGC	1 cut(s)	559
HinP1I	GCGC	1 cut(s)	559
HindIII	AAGCTT	2 cut(s)	263, 518
HinfI	GANTC	4 cut(s)	4, 61, 407, 442
HpaII	CCGG	2 cut(s)	403, 431
HphI	GGTGA	2 cut(s)	80, 302
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188I	TCNGA	2 cut(s)	226, 238
Hpy188III	TCNNGA	2 cut(s)	191, 456
Hpy8I	GTNNAC	1 cut(s)	377
HpyCH4V	TGCA	5 cut(s)	31, 161, 176, 358, 526
HpyF10VI	GCNNNNNNNGC	1 cut(s)	238
HpyF3I	CTNAG	1 cut(s)	119
Hsp92II	CATG	7 cut(s)	68, 143, 165, 279, 354, 392, 566
HspAI	GCGC	1 cut(s)	559
Kzo9I	GATC	3 cut(s)	73, 272, 548
LmnI	GCTCC	2 cut(s)	150, 226
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	1 cut(s)	122
MaeI	CTAG	2 cut(s)	42, 147
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	3 cut(s)	75, 274, 550
MbiI	CCGCTC	1 cut(s)	153
MboI	GATC	3 cut(s)	73, 272, 548
MboII	GAAGA	2 cut(s)	243, 329
MflI	RGATCY	1 cut(s)	548
MluCI	AATT	2 cut(s)	10, 306
MlyI	GAGTC	1 cut(s)	70
MnlI	CCTC	6 cut(s)	38, 64, 92, 121, 452, 570
MseI	TTAA	2 cut(s)	300, 570
MspI	CCGG	2 cut(s)	403, 431
MspR9I	CCNGG	1 cut(s)	404
MwoI	GCNNNNNNNGC	1 cut(s)	238
NciI	CCSGG	1 cut(s)	404
NdeII	GATC	3 cut(s)	73, 272, 548
NlaIII	CATG	7 cut(s)	68, 143, 165, 279, 354, 392, 566
NlaIV	GGNNCC	1 cut(s)	485
NspI	RCATGY	2 cut(s)	143, 165
NspV	TTCGAA	1 cut(s)	7
PaeR7I	CTCGAG	1 cut(s)	456
PciI	ACATGT	1 cut(s)	139
PfeI	GAWTC	3 cut(s)	4, 407, 442
PflMI	CCANNNNNTGG	2 cut(s)	267, 287
PkrI	GCNGC	1 cut(s)	231
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
PscI	ACATGT	1 cut(s)	139
PshAI	GACNNNNGTC	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	485
PspPI	GGNCC	1 cut(s)	483
PstNI	CAGNNNCTG	2 cut(s)	197, 247
PsuI	RGATCY	1 cut(s)	548
SaqAI	TTAA	2 cut(s)	300, 570
SatI	GCNGC	1 cut(s)	230
Sau3AI	GATC	3 cut(s)	73, 272, 548
Sau96I	GGNCC	1 cut(s)	483
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	1 cut(s)	404
SetI	ASST	8 cut(s)	49, 181, 249, 267, 508, 522, 581, 587
SfaNI	GCATC	1 cut(s)	122
Sfr274I	CTCGAG	1 cut(s)	456
SfuI	TTCGAA	1 cut(s)	7
SlaI	CTCGAG	1 cut(s)	456
SmlI	CTYRAG	1 cut(s)	456
SmoI	CTYRAG	1 cut(s)	456
Sse9I	AATT	2 cut(s)	10, 306
SsiI	CCGC	1 cut(s)	153
SspMI	CTAG	2 cut(s)	42, 147
StyD4I	CCNGG	1 cut(s)	402
TaqI	TCGA	2 cut(s)	7, 457
TasI	AATT	2 cut(s)	10, 306
TfiI	GAWTC	3 cut(s)	4, 407, 442
Tru1I	TTAA	2 cut(s)	300, 570
Tru9I	TTAA	2 cut(s)	300, 570
TseI	GCWGC	1 cut(s)	229
TspDTI	ATGAA	4 cut(s)	81, 330, 429, 479
TspGWI	ACGGA	1 cut(s)	8
Van91I	CCANNNNNTGG	2 cut(s)	267, 287
XapI	RAATTY	1 cut(s)	10
XceI	RCATGY	2 cut(s)	143, 165
XhoI	CTCGAG	1 cut(s)	456
XmiI	GTMKAC	1 cut(s)	376
XspI	CTAG	2 cut(s)	42, 147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.