Rmu_sc0002494.1_g000002

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002494.1
OG0006389
Physical Location & Seq
Forward (+)
2867 .. 3510
644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002494.1_g000002.1.cds

Sequence Viewer

Length: 426 bp
atgaacccctcaaacggtgccgattctcgtcgccggaaaacgacgtcgtaccggcgccacactcaccggcctccgtccagtccacttcagcactggaagctccacgacgacaaatccaccggcgcctccgtggcctctgctcggaagctcgccgccgggctctggcagctgcgcttcagcgaagtttcatggggtgcagagctcaactctggttctgatgatcatcttcgagctcaccttgaggttgttacaaatagcaagaacatggatgttcagtggtcatgtttgaactctgatgttgtttttatttttgttttatttagcttgaatcgtctttggggtgttccaaattgggattggagagggcaacaaagtgggatgcttactgctggaatgaatcggctgaaatttgtggggtttatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

16.02

Weight (kDa)

10.34

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 47
AccB1I GGYRCC 3 cut(s) 17, 54, 122
AciI CCGC 1 cut(s) 153
AcsI RAATTY 1 cut(s) 407
AcuI CTGAAG 2 cut(s) 71, 160
AcyI GRCGYC 3 cut(s) 44, 55, 123
AfaI GTAC 1 cut(s) 50
AfiI CCNNNNNNNGG 3 cut(s) 14, 141, 162
AgsI TTSAA 2 cut(s) 289, 328
AluBI AGCT 6 cut(s) 100, 148, 169, 202, 233, 324
AluI AGCT 6 cut(s) 100, 148, 169, 202, 233, 324
Alw21I GWGCWC 2 cut(s) 204, 235
AoxI GGCC 2 cut(s) 68, 132
ApeKI GCWGC 2 cut(s) 166, 169
ApoI RAATTY 1 cut(s) 407
AspLEI GCGC 3 cut(s) 57, 125, 174
AsuC2I CCSGG 1 cut(s) 157
AsuHPI GGTGA 2 cut(s) 56, 227
BanI GGYRCC 3 cut(s) 17, 54, 122
BanII GRGCYC 3 cut(s) 162, 204, 235
Bbv12I GWGCWC 2 cut(s) 204, 235
BbvI GCAGC 2 cut(s) 156, 178
BclI TGATCA 1 cut(s) 220
BcnI CCSGG 1 cut(s) 157
BfoI RGCGCY 2 cut(s) 58, 126
BglI GCCNNNNNGGC 1 cut(s) 131
BisI GCNGC 3 cut(s) 153, 167, 170
BlsI GCNGC 3 cut(s) 154, 168, 171
Bme1390I CCNGG 1 cut(s) 157
BmiI GGNNCC 3 cut(s) 19, 56, 124
BmrFI CCNGG 1 cut(s) 157
BmsI GCATC 1 cut(s) 369
BplI GAGNNNNNCTC 2 cut(s) 191, 223
BpuEI CTTGAG 1 cut(s) 260
BpuMI CCSGG 1 cut(s) 157
BsaBI GATNNNNATC 1 cut(s) 222
BsaHI GRCGYC 3 cut(s) 44, 55, 123
BsaJI CCNNGG 1 cut(s) 129
Bsc4I CCNNNNNNNGG 3 cut(s) 14, 141, 162
Bse118I RCCGGY 3 cut(s) 51, 66, 119
Bse1I ACTGG 2 cut(s) 78, 98
Bse8I GATNNNNATC 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 2 cut(s) 274, 384
BseJI GATNNNNATC 1 cut(s) 222
BseLI CCNNNNNNNGG 3 cut(s) 14, 141, 162
BseNI ACTGG 2 cut(s) 78, 98
BseXI GCAGC 2 cut(s) 156, 178
BsgI GTGCAG 1 cut(s) 216
BshFI GGCC 2 cut(s) 70, 134
BshNI GGYRCC 3 cut(s) 17, 54, 122
BsiHKAI GWGCWC 2 cut(s) 204, 235
BsiSI CCGG 5 cut(s) 34, 52, 67, 120, 156
BslI CCNNNNNNNGG 3 cut(s) 14, 141, 162
BsnI GGCC 2 cut(s) 70, 134
Bsp1286I GDGCHC 3 cut(s) 162, 204, 235
Bsp143I GATC 1 cut(s) 220
BspACI CCGC 1 cut(s) 153
BspANI GGCC 2 cut(s) 70, 134
BspLI GGNNCC 3 cut(s) 19, 56, 124
BspT107I GGYRCC 3 cut(s) 17, 54, 122
BsrFI RCCGGY 3 cut(s) 51, 66, 119
BsrI ACTGG 2 cut(s) 78, 98
BssAI RCCGGY 3 cut(s) 51, 66, 119
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 1 cut(s) 220
BssNI GRCGYC 3 cut(s) 44, 55, 123
Bst4CI ACNGT 1 cut(s) 17
BstACI GRCGYC 3 cut(s) 44, 55, 123
BstC8I GCNNGC 1 cut(s) 150
BstDSI CCRYGG 1 cut(s) 129
BstF5I GGATG 2 cut(s) 274, 384
BstH2I RGCGCY 2 cut(s) 58, 126
BstHHI GCGC 3 cut(s) 57, 125, 174
BstKTI GATC 1 cut(s) 223
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 3 cut(s) 97, 131, 166
BstSCI CCNGG 1 cut(s) 155
BstV1I GCAGC 2 cut(s) 156, 178
BsuRI GGCC 2 cut(s) 70, 134
BtgI CCRYGG 1 cut(s) 129
BtsCI GGATG 2 cut(s) 274, 384
BtsIMutI CAGTG 2 cut(s) 91, 281
Cac8I GCNNGC 1 cut(s) 150
CfoI GCGC 3 cut(s) 57, 125, 174
Cfr10I RCCGGY 3 cut(s) 51, 66, 119
Csp6I GTAC 1 cut(s) 49
CviAII CATG 3 cut(s) 189, 265, 282
CviQI GTAC 1 cut(s) 49
DinI GGCGCC 2 cut(s) 56, 124
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
Ecl136II GAGCTC 2 cut(s) 202, 233
Eco24I GRGCYC 3 cut(s) 162, 204, 235
Eco53kI GAGCTC 2 cut(s) 202, 233
Eco57I CTGAAG 2 cut(s) 71, 160
EcoICRI GAGCTC 2 cut(s) 202, 233
EcoT38I GRGCYC 3 cut(s) 162, 204, 235
EgeI GGCGCC 2 cut(s) 56, 124
EheI GGCGCC 2 cut(s) 56, 124
FaeI CATG 3 cut(s) 192, 268, 285
FaiI YATR 5 cut(s) 190, 266, 283, 422, 424
FatI CATG 3 cut(s) 188, 264, 281
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 3 cut(s) 153, 167, 170
FokI GGATG 2 cut(s) 281, 391
FriOI GRGCYC 3 cut(s) 162, 204, 235
Fsp4HI GCNGC 3 cut(s) 153, 167, 170
GlaI GCGC 3 cut(s) 56, 124, 173
GluI GCNGC 3 cut(s) 153, 167, 170
HaeII RGCGCY 2 cut(s) 58, 126
HaeIII GGCC 2 cut(s) 70, 134
HapII CCGG 5 cut(s) 34, 52, 67, 120, 156
HhaI GCGC 3 cut(s) 57, 125, 174
Hin1I GRCGYC 3 cut(s) 44, 55, 123
Hin1II CATG 3 cut(s) 192, 268, 285
Hin6I GCGC 3 cut(s) 55, 123, 172
HinP1I GCGC 3 cut(s) 55, 123, 172
HinfI GANTC 3 cut(s) 23, 328, 397
HpaII CCGG 5 cut(s) 34, 52, 67, 120, 156
HphI GGTGA 2 cut(s) 56, 227
Hpy166II GTNNAC 1 cut(s) 83
Hpy188I TCNGA 3 cut(s) 144, 217, 295
Hpy8I GTNNAC 1 cut(s) 83
Hpy99I CGWCG 4 cut(s) 33, 46, 49, 110
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4IV ACGT 1 cut(s) 44
HpyCH4V TGCA 1 cut(s) 197
HpyF10VI GCNNNNNNNGC 3 cut(s) 97, 131, 166
HpySE526I ACGT 1 cut(s) 44
Hsp92I GRCGYC 3 cut(s) 44, 55, 123
Hsp92II CATG 3 cut(s) 192, 268, 285
HspAI GCGC 3 cut(s) 55, 123, 172
KasI GGCGCC 2 cut(s) 54, 122
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 1 cut(s) 220
LmnI GCTCC 1 cut(s) 105
Lsp1109I GCAGC 2 cut(s) 156, 178
LweI GCATC 1 cut(s) 369
MaeII ACGT 1 cut(s) 44
MaeIII GTNAC 1 cut(s) 247
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 1 cut(s) 218
MhlI GDGCHC 3 cut(s) 162, 204, 235
MluCI AATT 2 cut(s) 349, 407
Mly113I GGCGCC 2 cut(s) 55, 123
MnlI CCTC 6 cut(s) 19, 81, 136, 145, 235, 356
MspA1I CMGCKG 1 cut(s) 169
MspI CCGG 5 cut(s) 34, 52, 67, 120, 156
MspR9I CCNGG 1 cut(s) 157
MwoI GCNNNNNNNGC 3 cut(s) 97, 131, 166
NarI GGCGCC 2 cut(s) 55, 123
NciI CCSGG 1 cut(s) 157
NdeII GATC 1 cut(s) 220
NlaIII CATG 3 cut(s) 192, 268, 285
NlaIV GGNNCC 3 cut(s) 19, 56, 124
PfeI GAWTC 3 cut(s) 23, 328, 397
PkrI GCNGC 3 cut(s) 154, 168, 171
PluTI GGCGCC 2 cut(s) 58, 126
Psp124BI GAGCTC 2 cut(s) 204, 235
PspN4I GGNNCC 3 cut(s) 19, 56, 124
PvuII CAGCTG 1 cut(s) 169
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
SacI GAGCTC 2 cut(s) 204, 235
SatI GCNGC 3 cut(s) 153, 167, 170
Sau3AI GATC 1 cut(s) 220
ScrFI CCNGG 1 cut(s) 157
SduI GDGCHC 3 cut(s) 162, 204, 235
SetI ASST 9 cut(s) 47, 102, 150, 171, 204, 235, 240, 246, 326
SfaNI GCATC 1 cut(s) 369
SfoI GGCGCC 2 cut(s) 56, 124
SgrAI CRCCGGYG 1 cut(s) 119
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 2 cut(s) 349, 407
SsiI CCGC 1 cut(s) 153
SspDI GGCGCC 2 cut(s) 54, 122
SstI GAGCTC 2 cut(s) 204, 235
StyD4I CCNGG 1 cut(s) 155
TaaI ACNGT 1 cut(s) 17
TaiI ACGT 1 cut(s) 47
TaqI TCGA 1 cut(s) 229
TasI AATT 2 cut(s) 349, 407
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 3 cut(s) 23, 328, 397
TscAI CASTG 2 cut(s) 98, 281
TseI GCWGC 2 cut(s) 166, 169
TspDTI ATGAA 3 cut(s) 17, 177, 410
TspGWI ACGGA 2 cut(s) 63, 118
TspRI CASTG 2 cut(s) 98, 281
XapI RAATTY 1 cut(s) 407
XcmI CCANNNNNNNNNTGG 2 cut(s) 90, 354
ZraI GACGTC 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.